Wall clock time and date at job start Tue Mar 31 2020 08:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 N 1.46497 * 109.46795 * 179.97438 * 5 4 2 7 7 C 1.34778 * 119.99736 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99910 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99823 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99541 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46624 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46633 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00016 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99433 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00303 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47192 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46952 * 119.99845 * 16 14 12 19 19 H 1.48491 * 109.47250 * 239.99873 * 16 14 12 20 20 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 21 21 C 1.38237 * 119.99747 * 59.72563 * 20 2 1 22 22 C 1.38240 * 119.99788 * 179.81066 * 21 20 2 23 23 C 1.38236 * 119.99657 * 0.39831 * 22 21 20 24 24 C 1.38230 * 120.00403 * 359.85459 * 23 22 21 25 25 C 1.38232 * 120.00112 * 240.00114 * 20 2 1 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 32 32 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 33 33 H 0.96995 * 120.00714 * 0.02562 * 6 5 4 34 34 H 0.96989 * 120.00028 * 0.02562 * 9 7 6 35 35 H 1.08993 * 109.47143 * 300.00124 * 10 9 7 36 36 H 1.08998 * 109.46780 * 60.00233 * 10 9 7 37 37 H 1.08994 * 109.47097 * 300.00292 * 11 10 9 38 38 H 1.08998 * 109.46906 * 60.00249 * 11 10 9 39 39 H 0.97001 * 120.00595 * 179.97438 * 15 14 12 40 40 H 1.08003 * 120.00234 * 0.02562 * 21 20 2 41 41 H 1.07995 * 119.99993 * 180.23158 * 22 21 20 42 42 H 1.08005 * 119.99783 * 179.83592 * 23 22 21 43 43 H 1.08000 * 120.00473 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.99991 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 7 2.1242 -0.6214 -3.6914 7 6 1.8835 -0.1054 -4.9130 8 8 1.2610 0.9333 -5.0222 9 7 2.3329 -0.7408 -6.0134 10 6 2.0716 -0.1795 -7.3412 11 6 2.6851 -1.0881 -8.4086 12 6 2.4169 -0.5104 -9.7744 13 1 1.8647 0.4126 -9.8714 14 6 2.8767 -1.1604 -10.9001 15 7 3.5496 -2.2841 -10.7819 16 14 2.5437 -0.4448 -12.5932 17 1 1.7729 0.8169 -12.4545 18 1 3.8331 -0.1641 -13.2742 19 1 1.7611 -1.4178 -13.3967 20 6 2.0323 -0.7104 1.2305 21 6 1.6936 -2.0322 1.4521 22 6 2.1576 -2.6850 2.5788 23 6 2.9535 -2.0136 3.4881 24 6 3.2878 -0.6903 3.2691 25 6 2.8270 -0.0386 2.1405 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 0.5490 0.1471 -2.5390 32 1 2.0700 1.0675 -2.4494 33 1 2.6205 -1.4503 -3.6043 34 1 2.8291 -1.5696 -5.9262 35 1 0.9958 -0.1070 -7.4998 36 1 2.5167 0.8131 -7.4100 37 1 3.7609 -1.1602 -8.2497 38 1 2.2403 -2.0809 -8.3398 39 1 3.8727 -2.7416 -11.5739 40 1 1.0694 -2.5559 0.7432 41 1 1.8961 -3.7187 2.7501 42 1 3.3138 -2.5228 4.3697 43 1 3.9092 -0.1656 3.9797 44 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343693242.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:30 Heat of formation + Delta-G solvation = -55.800065 kcal Electronic energy + Delta-G solvation = -21523.833765 eV Core-core repulsion = 18245.976794 eV Total energy + Delta-G solvation = -3277.856971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01710 -40.35509 -37.54789 -36.50593 -35.13929 -34.74368 -31.82969 -31.72108 -30.72552 -29.04768 -26.72567 -25.31698 -23.68696 -23.10200 -22.67442 -21.99984 -20.80738 -19.27133 -18.41542 -17.86005 -17.14646 -16.91423 -16.48643 -16.27236 -16.01454 -15.56781 -15.32125 -15.18223 -14.83635 -14.43132 -14.38811 -14.22994 -14.10685 -13.78819 -13.19914 -13.14236 -12.96032 -12.74372 -12.61539 -12.50356 -12.23733 -12.13026 -11.96439 -11.67199 -11.53579 -11.50756 -11.42572 -11.17113 -10.60494 -10.31651 -9.76542 -9.68514 -9.55512 -8.23510 -6.33572 0.49978 0.55494 1.41768 1.42607 1.55880 1.80244 2.18357 2.42129 2.93189 3.11284 3.40547 3.65005 3.84998 4.13866 4.18955 4.23546 4.24100 4.36030 4.47033 4.49546 4.53461 4.55462 4.65817 4.71151 4.75188 4.87572 4.96841 5.03187 5.07872 5.20062 5.22418 5.29305 5.33369 5.39007 5.52310 5.55748 5.60521 5.64846 5.68802 5.79744 5.80135 6.07529 6.18029 6.18342 6.79852 7.15479 7.35736 7.61918 8.88598 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039566 B = 0.001996 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.506740 B =14027.604740 C =14387.055304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 H 0.083 0.917 4 C -0.109 4.109 5 C 0.138 3.862 6 N -0.734 5.734 7 C 0.696 3.304 8 O -0.642 6.642 9 N -0.734 5.734 10 C 0.160 3.840 11 C 0.023 3.977 12 C -0.545 4.545 13 H 0.059 0.941 14 C 0.006 3.994 15 N -0.926 5.926 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.276 1.276 20 C -0.082 4.082 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.129 4.129 25 C -0.131 4.131 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.411 0.589 34 H 0.407 0.593 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 -1.028 30.208 30.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 H 0.101 0.899 4 C -0.147 4.147 5 C 0.014 3.986 6 N -0.390 5.390 7 C 0.395 3.605 8 O -0.524 6.524 9 N -0.389 5.389 10 C 0.036 3.964 11 C -0.014 4.014 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.193 4.193 15 N -0.566 5.566 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.082 4.082 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.147 4.147 25 C -0.149 4.149 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.242 0.758 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.028 0.972 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.899 -0.210 30.015 30.075 hybrid contribution 0.418 -0.503 -0.957 1.159 sum -1.481 -0.713 29.058 29.104 Atomic orbital electron populations 1.21917 0.93871 1.02561 1.02065 1.20026 0.96295 0.99221 0.90781 0.89862 1.21750 1.02056 0.99547 0.91329 1.21306 0.99075 0.95701 0.82504 1.44992 1.61282 1.29148 1.03624 1.16208 0.79690 0.83132 0.81447 1.90855 1.48347 1.26447 1.86768 1.45224 1.60139 1.28496 1.05038 1.21069 0.98903 0.96643 0.79820 1.19135 0.95447 0.94500 0.92326 1.21502 1.35756 1.09006 0.92130 0.92301 1.25878 0.94611 0.95225 1.03558 1.70060 1.37960 1.17740 1.30848 0.85380 0.78122 0.78629 0.78813 1.18991 1.20231 1.20199 1.19920 0.97631 0.94508 0.96102 1.21214 1.00399 0.94466 0.98144 1.21433 0.97939 1.00743 0.94576 1.21444 0.98724 0.95090 1.00094 1.21418 1.00129 0.95309 0.97805 1.21329 0.98235 1.00579 0.94751 0.91935 0.92319 0.92240 0.90587 0.89976 0.92167 0.92830 0.75313 0.75763 0.93868 0.93923 0.97274 0.97234 0.92551 0.85268 0.84703 0.84643 0.84671 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.76 71.98 0.63 -1.34 16 2 C -0.04 -0.59 2.56 -11.54 -0.03 -0.62 16 3 H 0.08 1.11 7.88 -2.39 -0.02 1.09 16 4 C -0.11 -1.53 4.54 30.60 0.14 -1.39 16 5 C 0.14 2.88 5.43 86.38 0.47 3.35 16 6 N -0.73 -17.87 5.56 -478.52 -2.66 -20.53 16 7 C 0.70 24.60 8.57 179.05 1.53 26.13 16 8 O -0.64 -28.44 16.34 -3.99 -0.07 -28.50 16 9 N -0.73 -26.30 5.56 -478.51 -2.66 -28.96 16 10 C 0.16 7.10 5.61 86.38 0.48 7.58 16 11 C 0.02 1.20 5.09 29.85 0.15 1.35 16 12 C -0.55 -30.78 9.11 25.60 0.23 -30.55 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 14 C 0.01 0.33 5.46 84.66 0.46 0.80 16 15 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 16 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 C -0.08 -1.16 4.78 -19.87 -0.09 -1.26 16 21 C -0.12 -1.70 8.76 22.27 0.20 -1.51 16 22 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 23 C -0.14 -1.68 10.05 22.27 0.22 -1.46 16 24 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 25 C -0.13 -1.83 9.67 22.27 0.22 -1.62 16 26 H 0.06 0.78 7.38 -2.39 -0.02 0.76 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.88 6.57 -2.39 -0.02 0.87 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.02 7.58 -2.39 -0.02 1.00 16 31 H 0.06 1.37 6.57 -2.39 -0.02 1.36 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.41 7.36 8.49 -92.71 -0.79 6.57 16 34 H 0.41 12.25 8.49 -92.72 -0.79 11.46 16 35 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.13 1.48 7.16 -2.91 -0.02 1.45 16 41 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 44 H 0.13 1.49 7.95 -2.91 -0.02 1.46 16 Total: -1.00 -70.60 365.35 1.40 -69.19 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.58 Total: 20.45 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 5.06 Total: -3.39 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -5.04 Total: -103.67 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.07 Total: -28.50 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.60 1.40 -69.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343693242.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.394 kcal (2) G-P(sol) polarization free energy of solvation -70.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds