Wall clock time and date at job start Tue Mar 31 2020 08:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 N 1.46499 * 109.47064 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00172 * 179.97438 * 6 5 4 8 8 O 1.21595 * 119.99557 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00654 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00698 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47469 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47255 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99694 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00307 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99709 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00256 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47039 * 60.00192 * 16 14 12 18 18 H 1.48502 * 109.47105 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47401 * 300.00418 * 16 14 12 20 20 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 21 21 C 1.38237 * 119.99936 * 299.72798 * 20 2 1 22 22 C 1.38239 * 120.00019 * 179.79019 * 21 20 2 23 23 C 1.38233 * 119.99539 * 0.43796 * 22 21 20 24 24 C 1.38231 * 120.00493 * 359.81540 * 23 22 21 25 25 C 1.38236 * 119.99974 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 29 29 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 30 30 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 31 31 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 32 32 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 33 33 H 0.97005 * 120.00389 * 359.97438 * 6 5 4 34 34 H 0.97005 * 119.99907 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47059 * 300.00632 * 10 9 7 36 36 H 1.08998 * 109.47046 * 59.99632 * 10 9 7 37 37 H 1.08997 * 109.47268 * 300.00484 * 11 10 9 38 38 H 1.08998 * 109.47170 * 59.99852 * 11 10 9 39 39 H 0.97001 * 120.00058 * 180.02562 * 15 14 12 40 40 H 1.07998 * 120.00490 * 359.97438 * 21 20 2 41 41 H 1.08000 * 120.00241 * 180.27418 * 22 21 20 42 42 H 1.08006 * 119.99896 * 179.83904 * 23 22 21 43 43 H 1.08002 * 120.00573 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.00273 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 7 2.1242 -0.6213 3.6914 7 6 1.8843 -0.1048 4.9129 8 8 1.2625 0.9345 5.0221 9 7 2.3335 -0.7400 6.0134 10 6 2.0733 -0.1782 7.3411 11 6 2.6853 -1.0875 8.4086 12 6 2.4181 -0.5093 9.7743 13 1 1.8665 0.4142 9.8713 14 6 2.8769 -1.1596 10.9002 15 7 3.5482 -2.2844 10.7822 16 14 2.5463 -0.4425 12.5931 17 1 1.0808 -0.3406 12.8099 18 1 3.1403 -1.3251 13.6291 19 1 3.1555 0.9085 12.6859 20 6 2.0323 -0.7105 -1.2304 21 6 1.7030 -2.0356 -1.4463 22 6 2.1601 -2.6860 -2.5772 23 6 2.9541 -2.0140 -3.4876 24 6 3.2878 -0.6905 -3.2691 25 6 2.8270 -0.0387 -2.1405 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1264 -0.7995 1.2056 31 1 2.0700 1.0675 2.4493 32 1 0.5490 0.1472 2.5389 33 1 2.6205 -1.4502 3.6043 34 1 2.8292 -1.5692 5.9264 35 1 2.5190 0.8142 7.4095 36 1 0.9975 -0.1050 7.5001 37 1 2.2393 -2.0796 8.3400 38 1 3.7612 -1.1612 8.2497 39 1 3.8706 -2.7422 11.5742 40 1 1.0861 -2.5618 -0.7330 41 1 1.8991 -3.7200 -2.7481 42 1 3.3134 -2.5229 -4.3698 43 1 3.9077 -0.1652 -3.9806 44 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343693372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:35 Heat of formation + Delta-G solvation = -55.683256 kcal Electronic energy + Delta-G solvation = -21524.120743 eV Core-core repulsion = 18246.268837 eV Total energy + Delta-G solvation = -3277.851906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.01650 -40.35509 -37.54816 -36.50467 -35.13814 -34.74077 -31.82903 -31.72014 -30.72459 -29.04956 -26.72151 -25.31477 -23.68947 -23.09983 -22.67247 -21.99936 -20.80732 -19.27014 -18.40734 -17.85979 -17.14516 -16.91396 -16.49143 -16.27266 -16.01476 -15.56756 -15.31935 -15.18146 -14.83635 -14.42529 -14.38450 -14.22043 -14.10721 -13.79206 -13.21034 -13.14151 -12.93268 -12.73876 -12.61474 -12.52391 -12.21841 -12.13116 -11.96461 -11.67565 -11.53689 -11.51103 -11.43769 -11.18075 -10.59166 -10.31594 -9.76548 -9.68491 -9.55518 -8.22915 -6.33164 0.49967 0.55492 1.42644 1.45213 1.52996 1.80206 2.18343 2.42423 2.93183 3.11719 3.40529 3.65011 3.84966 4.13848 4.19011 4.23540 4.24012 4.36049 4.47023 4.49576 4.53471 4.55485 4.65754 4.71236 4.75197 4.87605 4.96797 5.03166 5.07847 5.20067 5.22410 5.29273 5.33337 5.39003 5.52187 5.55718 5.60646 5.64844 5.68801 5.79731 5.80163 6.07499 6.18057 6.18505 6.79743 7.15451 7.35945 7.61905 8.88751 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039556 B = 0.001996 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.692451 B =14025.253510 C =14385.423239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 H 0.083 0.917 4 C -0.109 4.109 5 C 0.138 3.862 6 N -0.734 5.734 7 C 0.696 3.304 8 O -0.642 6.642 9 N -0.734 5.734 10 C 0.160 3.840 11 C 0.024 3.976 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.006 3.994 15 N -0.926 5.926 16 Si 0.966 3.034 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.269 1.269 20 C -0.082 4.082 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.129 4.129 25 C -0.131 4.131 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.411 0.589 34 H 0.407 0.593 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 -1.028 -30.189 30.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 H 0.101 0.899 4 C -0.147 4.147 5 C 0.014 3.986 6 N -0.390 5.390 7 C 0.395 3.605 8 O -0.524 6.524 9 N -0.389 5.389 10 C 0.036 3.964 11 C -0.014 4.014 12 C -0.586 4.586 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.194 1.194 20 C -0.082 4.082 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.147 4.147 25 C -0.149 4.149 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.247 0.753 34 H 0.242 0.758 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.887 -0.217 -29.993 30.053 hybrid contribution 0.407 -0.486 0.950 1.142 sum -1.481 -0.703 -29.043 29.089 Atomic orbital electron populations 1.21917 0.93870 1.02557 1.02063 1.20024 0.96300 0.99224 0.90775 0.89863 1.21751 1.02056 0.99552 0.91330 1.21304 0.99076 0.95701 0.82503 1.44994 1.61292 1.29134 1.03626 1.16207 0.79688 0.83137 0.81446 1.90857 1.48385 1.26414 1.86773 1.45222 1.60171 1.28455 1.05042 1.21067 0.98910 0.96637 0.79823 1.19124 0.95437 0.94484 0.92308 1.21444 1.35985 1.09016 0.92137 0.92284 1.25879 0.94595 0.95220 1.03549 1.70052 1.37902 1.17635 1.30974 0.85489 0.78793 0.78402 0.78304 1.19346 1.20567 1.19379 1.19920 0.97640 0.94472 0.96127 1.21213 1.00464 0.94430 0.98118 1.21433 0.97967 1.00770 0.94521 1.21444 0.98702 0.95089 1.00116 1.21418 1.00142 0.95305 0.97797 1.21330 0.98186 1.00599 0.94781 0.91943 0.92239 0.92320 0.89969 0.90586 0.92835 0.92164 0.75311 0.75763 0.93912 0.93877 0.97258 0.97298 0.92549 0.85268 0.84701 0.84642 0.84671 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.76 71.98 0.63 -1.34 16 2 C -0.04 -0.59 2.56 -11.54 -0.03 -0.62 16 3 H 0.08 1.11 7.88 -2.39 -0.02 1.09 16 4 C -0.11 -1.53 4.53 30.59 0.14 -1.39 16 5 C 0.14 2.88 5.43 86.38 0.47 3.35 16 6 N -0.73 -17.87 5.56 -478.53 -2.66 -20.54 16 7 C 0.70 24.60 8.57 179.06 1.53 26.14 16 8 O -0.64 -28.44 16.34 -4.01 -0.07 -28.50 16 9 N -0.73 -26.31 5.56 -478.55 -2.66 -28.97 16 10 C 0.16 7.10 5.61 86.38 0.48 7.58 16 11 C 0.02 1.22 5.09 29.85 0.15 1.38 16 12 C -0.55 -30.88 9.11 25.60 0.23 -30.64 16 13 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 14 C 0.01 0.36 5.46 84.66 0.46 0.82 16 15 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 16 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 C -0.08 -1.16 4.78 -19.87 -0.09 -1.26 16 21 C -0.12 -1.70 8.76 22.27 0.20 -1.51 16 22 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 23 C -0.14 -1.68 10.05 22.27 0.22 -1.46 16 24 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 25 C -0.13 -1.83 9.67 22.27 0.22 -1.62 16 26 H 0.06 0.78 7.41 -2.39 -0.02 0.76 16 27 H 0.06 0.88 6.56 -2.39 -0.02 0.87 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 1.02 7.56 -2.38 -0.02 1.00 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.37 6.56 -2.39 -0.02 1.36 16 33 H 0.41 7.36 8.49 -92.70 -0.79 6.57 16 34 H 0.41 12.25 8.49 -92.70 -0.79 11.46 16 35 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 40 H 0.13 1.48 7.16 -2.91 -0.02 1.45 16 41 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 44 H 0.13 1.49 7.95 -2.91 -0.02 1.47 16 Total: -1.00 -70.50 365.36 1.40 -69.10 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -0.58 Total: 20.65 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 5.06 Total: -3.44 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -5.04 Total: -103.69 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.07 Total: -28.50 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -70.50 1.40 -69.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343693372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.414 kcal (2) G-P(sol) polarization free energy of solvation -70.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds