Wall clock time and date at job start Tue Mar 31 2020 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00196 * 2 1 4 4 O 1.42893 * 109.47096 * 135.00045 * 3 2 1 5 5 C 1.42903 * 113.99986 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47328 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47179 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47266 * 179.27887 * 7 6 5 9 9 C 1.46906 * 110.99857 * 287.83819 * 8 7 6 10 10 C 1.50703 * 109.47090 * 298.73234 * 9 8 7 11 11 H 1.08006 * 119.99557 * 4.70358 * 10 9 8 12 12 C 1.37873 * 119.99861 * 184.69591 * 10 9 8 13 13 N 1.31517 * 119.99721 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00114 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47088 * 89.99885 * 14 12 10 16 16 H 1.48504 * 109.46883 * 209.99632 * 14 12 10 17 17 H 1.48496 * 109.46934 * 329.99601 * 14 12 10 18 18 C 1.46897 * 111.00084 * 163.88133 * 8 7 6 19 19 C 1.50704 * 109.47057 * 189.99911 * 18 8 7 20 20 C 1.38229 * 119.61555 * 95.02693 * 19 18 8 21 21 C 1.38621 * 119.15988 * 179.97438 * 20 19 18 22 22 C 1.38668 * 118.42245 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.16504 * 0.02562 * 22 21 20 24 24 N 1.31852 * 119.62106 * 275.00140 * 19 18 8 25 25 H 1.08004 * 120.00200 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00251 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99948 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46962 * 15.00106 * 3 2 1 29 29 H 1.08991 * 109.47161 * 255.00424 * 3 2 1 30 30 H 1.08999 * 109.47417 * 59.99640 * 5 4 3 31 31 H 1.09009 * 109.47076 * 299.99870 * 5 4 3 32 32 H 1.09007 * 109.47200 * 59.99728 * 6 5 4 33 33 H 1.08997 * 109.47049 * 299.99619 * 6 5 4 34 34 H 1.09003 * 109.46530 * 59.28101 * 7 6 5 35 35 H 1.08998 * 109.47325 * 299.28092 * 7 6 5 36 36 H 1.08994 * 109.46962 * 58.73663 * 9 8 7 37 37 H 1.08998 * 109.46584 * 178.73744 * 9 8 7 38 38 H 0.96997 * 119.99711 * 180.02562 * 13 12 10 39 39 H 1.08997 * 109.47087 * 70.00418 * 18 8 7 40 40 H 1.08996 * 109.47314 * 310.00064 * 18 8 7 41 41 H 1.08006 * 120.41764 * 359.94728 * 20 19 18 42 42 H 1.08001 * 120.79188 * 180.02562 * 21 20 19 43 43 H 1.08001 * 120.42156 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.61994 * 180.27031 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9078 2.4353 1.0328 6 6 5.0107 2.2540 2.0776 7 6 5.8473 3.5322 2.1630 8 7 6.8956 3.3644 3.1783 9 6 6.3251 3.3833 4.5320 10 6 5.6585 4.7123 4.7777 11 1 5.5919 5.4385 3.9809 12 6 5.1336 5.0012 6.0194 13 7 4.5514 6.1608 6.2337 14 14 5.2494 3.7454 7.3975 15 1 6.5087 3.9569 8.1554 16 1 4.0893 3.9045 8.3109 17 1 5.2420 2.3766 6.8217 18 6 7.9387 4.3883 3.0323 19 6 9.1078 4.0444 3.9188 20 6 10.1800 3.3465 3.3954 21 6 11.2507 3.0356 4.2192 22 6 11.2030 3.4405 5.5446 23 6 10.0974 4.1351 5.9971 24 7 9.0964 4.4131 5.1847 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3855 2.1161 0.2660 29 1 2.4755 1.4868 -0.9926 30 1 3.2679 3.2695 1.3204 31 1 4.3581 2.6408 0.0616 32 1 5.6506 1.4199 1.7895 33 1 4.5608 2.0483 3.0488 34 1 5.2053 4.3689 2.4384 35 1 6.3075 3.7306 1.1950 36 1 5.5896 2.5847 4.6274 37 1 7.1198 3.2347 5.2631 38 1 4.1825 6.3641 7.1074 39 1 7.5373 5.3597 3.3209 40 1 8.2686 4.4255 1.9941 41 1 10.1834 3.0468 2.3577 42 1 12.1021 2.4916 3.8377 43 1 12.0192 3.2152 6.2150 44 1 10.0545 4.4579 7.0269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348029687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:38 Heat of formation + Delta-G solvation = 18.035928 kcal Electronic energy + Delta-G solvation = -22725.974322 eV Core-core repulsion = 19451.319120 eV Total energy + Delta-G solvation = -3274.655202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.80495 -38.13189 -36.93791 -34.12524 -32.42679 -32.35664 -31.87737 -30.53266 -27.71182 -26.56410 -25.30358 -23.61387 -23.04500 -22.31550 -21.00352 -19.98179 -19.37102 -16.99056 -16.52404 -16.36415 -16.10625 -15.79884 -15.46145 -15.10495 -14.65454 -14.49955 -14.16640 -13.73305 -13.32507 -13.09554 -12.81907 -12.70611 -12.51830 -12.29327 -11.93731 -11.72249 -11.23672 -11.19682 -11.06861 -10.87557 -10.80772 -10.52497 -10.35864 -10.21870 -9.82619 -9.70286 -9.50081 -9.38563 -9.30063 -8.79853 -8.62622 -8.42683 -7.20586 -5.97468 -3.93607 1.49655 1.68275 2.03809 3.39018 3.44386 3.49454 3.83711 4.20301 4.53536 4.75167 4.87269 5.02027 5.05233 5.15163 5.24563 5.27734 5.38083 5.39106 5.41131 5.43583 5.50714 5.59261 5.73793 5.75801 5.83409 5.91376 6.00781 6.08661 6.16884 6.34968 6.40234 6.41836 6.48906 6.53135 6.70769 6.72481 6.83282 7.02237 7.10028 7.27721 7.37734 7.66769 8.04691 8.09017 8.54526 8.58748 9.02206 9.67875 11.15992 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.004142 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.816941 B = 6757.743429 C = 8203.915932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.147 4.147 3 C 0.087 3.913 4 O -0.385 6.385 5 C 0.066 3.934 6 C -0.107 4.107 7 C 0.062 3.938 8 N -0.529 5.529 9 C 0.151 3.849 10 C -0.530 4.530 11 H 0.072 0.928 12 C 0.078 3.922 13 N -0.903 5.903 14 Si 0.875 3.125 15 H -0.275 1.275 16 H -0.291 1.291 17 H -0.268 1.268 18 C 0.102 3.898 19 C 0.156 3.844 20 C -0.164 4.164 21 C -0.085 4.085 22 C -0.189 4.189 23 C 0.096 3.904 24 N -0.449 5.449 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.025 0.975 37 H 0.036 0.964 38 H 0.260 0.740 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.753 -8.377 -10.586 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.165 4.165 3 C 0.010 3.990 4 O -0.305 6.305 5 C -0.011 4.011 6 C -0.145 4.145 7 C -0.067 4.067 8 N -0.253 5.253 9 C 0.024 3.976 10 C -0.569 4.569 11 H 0.090 0.910 12 C -0.123 4.123 13 N -0.542 5.542 14 Si 0.703 3.297 15 H -0.201 1.201 16 H -0.217 1.217 17 H -0.193 1.193 18 C -0.026 4.026 19 C 0.018 3.982 20 C -0.184 4.184 21 C -0.111 4.111 22 C -0.209 4.209 23 C -0.062 4.062 24 N -0.158 5.158 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.133 0.867 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.192 -8.425 -10.096 13.802 hybrid contribution 0.348 -0.055 0.641 0.732 sum 4.540 -8.480 -9.454 13.487 Atomic orbital electron populations 1.23819 0.95612 1.02154 1.00690 1.22790 0.95647 0.98378 0.99694 1.21499 0.89326 0.95602 0.92546 1.87906 1.44424 1.37889 1.60235 1.22522 0.93068 0.86736 0.98781 1.21391 0.95318 0.98815 0.98995 1.21827 0.93671 0.96884 0.94269 1.62446 1.11659 1.45313 1.05860 1.20278 0.94739 0.96819 0.85753 1.21447 1.36667 1.00664 0.98114 0.91012 1.24809 0.94476 0.94809 0.98249 1.69921 1.39177 1.22097 1.23055 0.86860 0.77529 0.82681 0.82657 1.20119 1.21739 1.19277 1.20871 0.89654 0.96731 0.95345 1.21271 0.94124 0.91984 0.90830 1.21935 0.94930 1.00385 1.01188 1.21449 0.98067 0.97794 0.93774 1.22046 1.00288 1.01888 0.96653 1.22825 0.89072 0.94691 0.99621 1.67777 1.25875 1.18204 1.03921 0.88427 0.87963 0.86692 0.92853 0.92633 0.93041 0.93763 0.91452 0.90594 0.92376 0.92787 0.95731 0.94570 0.92983 0.91098 0.91242 0.85259 0.85589 0.85610 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.74 14.31 29.02 0.42 -1.33 16 2 C -0.15 -1.61 9.89 -36.02 -0.36 -1.97 16 3 C 0.09 1.05 6.35 36.01 0.23 1.28 16 4 O -0.39 -5.98 10.33 -35.23 -0.36 -6.34 16 5 C 0.07 0.98 5.94 37.16 0.22 1.20 16 6 C -0.11 -1.85 5.65 -26.73 -0.15 -2.00 16 7 C 0.06 1.13 4.81 -3.82 -0.02 1.11 16 8 N -0.53 -10.83 4.66 -237.51 -1.11 -11.94 16 9 C 0.15 3.68 3.77 -4.97 -0.02 3.66 16 10 C -0.53 -14.71 7.89 -34.44 -0.27 -14.98 16 11 H 0.07 2.14 6.20 -52.48 -0.33 1.81 16 12 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 13 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 14 Si 0.87 22.52 27.38 -169.99 -4.65 17.87 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 17 H -0.27 -6.75 6.68 56.52 0.38 -6.37 16 18 C 0.10 1.96 5.09 -4.98 -0.03 1.93 16 19 C 0.16 2.92 5.70 -82.58 -0.47 2.45 16 20 C -0.16 -2.47 9.72 -39.44 -0.38 -2.85 16 21 C -0.08 -1.12 10.18 -39.28 -0.40 -1.52 16 22 C -0.19 -2.58 10.11 -39.44 -0.40 -2.98 16 23 C 0.10 1.62 11.18 -17.55 -0.20 1.42 16 24 N -0.45 -9.24 8.78 -9.47 -0.08 -9.33 16 25 H 0.10 0.85 7.90 -52.48 -0.41 0.43 16 26 H 0.10 0.80 8.06 -52.49 -0.42 0.37 16 27 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.05 0.62 7.86 -51.93 -0.41 0.21 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 33 H 0.08 1.51 6.72 -51.93 -0.35 1.16 16 34 H 0.06 1.22 6.17 -51.93 -0.32 0.90 16 35 H 0.05 0.84 7.81 -51.93 -0.41 0.43 16 36 H 0.02 0.63 6.04 -51.93 -0.31 0.31 16 37 H 0.04 0.93 5.36 -51.93 -0.28 0.65 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.07 1.57 6.57 -51.93 -0.34 1.23 16 40 H 0.07 1.09 7.76 -51.93 -0.40 0.69 16 41 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 42 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -32.59 359.65 -8.88 -41.47 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.95 Total: 2.33 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.92 Total: -12.38 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.42 Total: -48.37 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.36 Total: -6.34 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.65 Total: 17.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.59 -8.88 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348029687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.507 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds