Wall clock time and date at job start Tue Mar 31 2020 06:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00196 * 2 1 4 4 O 1.42893 * 109.47096 * 135.00045 * 3 2 1 5 5 C 1.42903 * 113.99986 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47328 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47179 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47266 * 179.27887 * 7 6 5 9 9 C 1.46906 * 110.99857 * 287.83819 * 8 7 6 10 10 C 1.50703 * 109.47090 * 298.73234 * 9 8 7 11 11 H 1.08006 * 119.99557 * 4.70358 * 10 9 8 12 12 C 1.37873 * 119.99861 * 184.69591 * 10 9 8 13 13 N 1.31517 * 119.99721 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00114 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47088 * 89.99885 * 14 12 10 16 16 H 1.48504 * 109.46883 * 209.99632 * 14 12 10 17 17 H 1.48496 * 109.46934 * 329.99601 * 14 12 10 18 18 C 1.46897 * 111.00084 * 163.88133 * 8 7 6 19 19 C 1.50704 * 109.47057 * 189.99911 * 18 8 7 20 20 C 1.38229 * 119.61555 * 95.02693 * 19 18 8 21 21 C 1.38621 * 119.15988 * 179.97438 * 20 19 18 22 22 C 1.38668 * 118.42245 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.16504 * 0.02562 * 22 21 20 24 24 N 1.31852 * 119.62106 * 275.00140 * 19 18 8 25 25 H 1.08004 * 120.00200 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00251 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99948 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46962 * 15.00106 * 3 2 1 29 29 H 1.08991 * 109.47161 * 255.00424 * 3 2 1 30 30 H 1.08999 * 109.47417 * 59.99640 * 5 4 3 31 31 H 1.09009 * 109.47076 * 299.99870 * 5 4 3 32 32 H 1.09007 * 109.47200 * 59.99728 * 6 5 4 33 33 H 1.08997 * 109.47049 * 299.99619 * 6 5 4 34 34 H 1.09003 * 109.46530 * 59.28101 * 7 6 5 35 35 H 1.08998 * 109.47325 * 299.28092 * 7 6 5 36 36 H 1.08994 * 109.46962 * 58.73663 * 9 8 7 37 37 H 1.08998 * 109.46584 * 178.73744 * 9 8 7 38 38 H 0.96997 * 119.99711 * 180.02562 * 13 12 10 39 39 H 1.08997 * 109.47087 * 70.00418 * 18 8 7 40 40 H 1.08996 * 109.47314 * 310.00064 * 18 8 7 41 41 H 1.08006 * 120.41764 * 359.94728 * 20 19 18 42 42 H 1.08001 * 120.79188 * 180.02562 * 21 20 19 43 43 H 1.08001 * 120.42156 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.61994 * 180.27031 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9078 2.4353 1.0328 6 6 5.0107 2.2540 2.0776 7 6 5.8473 3.5322 2.1630 8 7 6.8956 3.3644 3.1783 9 6 6.3251 3.3833 4.5320 10 6 5.6585 4.7123 4.7777 11 1 5.5919 5.4385 3.9809 12 6 5.1336 5.0012 6.0194 13 7 4.5514 6.1608 6.2337 14 14 5.2494 3.7454 7.3975 15 1 6.5087 3.9569 8.1554 16 1 4.0893 3.9045 8.3109 17 1 5.2420 2.3766 6.8217 18 6 7.9387 4.3883 3.0323 19 6 9.1078 4.0444 3.9188 20 6 10.1800 3.3465 3.3954 21 6 11.2507 3.0356 4.2192 22 6 11.2030 3.4405 5.5446 23 6 10.0974 4.1351 5.9971 24 7 9.0964 4.4131 5.1847 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3855 2.1161 0.2660 29 1 2.4755 1.4868 -0.9926 30 1 3.2679 3.2695 1.3204 31 1 4.3581 2.6408 0.0616 32 1 5.6506 1.4199 1.7895 33 1 4.5608 2.0483 3.0488 34 1 5.2053 4.3689 2.4384 35 1 6.3075 3.7306 1.1950 36 1 5.5896 2.5847 4.6274 37 1 7.1198 3.2347 5.2631 38 1 4.1825 6.3641 7.1074 39 1 7.5373 5.3597 3.3209 40 1 8.2686 4.4255 1.9941 41 1 10.1834 3.0468 2.3577 42 1 12.1021 2.4916 3.8377 43 1 12.0192 3.2152 6.2150 44 1 10.0545 4.4579 7.0269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348029687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:37 Heat of formation + Delta-G solvation = -3.988343 kcal Electronic energy + Delta-G solvation = -22726.929366 eV Core-core repulsion = 19451.319120 eV Total energy + Delta-G solvation = -3275.610246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.06149 -39.32670 -38.45786 -35.09834 -34.52221 -33.62918 -33.09619 -31.96192 -29.61127 -27.71719 -26.52612 -25.30323 -24.23408 -23.78618 -22.28272 -21.22133 -20.74106 -19.04148 -17.71193 -17.52622 -17.25906 -17.08517 -16.77123 -16.48345 -16.09517 -15.99165 -15.80877 -15.05698 -14.56090 -14.47282 -14.36571 -13.96672 -13.88694 -13.60177 -13.37498 -13.08647 -12.94520 -12.84069 -12.42671 -12.33595 -12.17238 -12.05583 -11.97332 -11.80420 -11.64981 -11.48097 -10.79461 -10.72991 -10.62214 -10.23249 -10.06740 -9.84122 -8.97448 -8.25648 -6.23917 0.30427 0.55467 1.24157 1.30494 1.32103 1.41711 2.35910 2.69777 2.99407 3.12634 3.46452 3.70751 3.93515 4.02896 4.07944 4.12037 4.19408 4.30645 4.34004 4.38358 4.40333 4.45311 4.54172 4.59036 4.63585 4.72311 4.78979 4.88377 4.93370 4.98492 5.05589 5.12545 5.15538 5.27199 5.36250 5.36729 5.41618 5.59350 5.64677 5.73978 5.95174 6.09804 6.27661 6.35460 6.43136 6.76916 7.34819 7.40309 8.91105 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.004142 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.816941 B = 6757.743429 C = 8203.915932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.172 4.172 3 C 0.081 3.919 4 O -0.408 6.408 5 C 0.072 3.928 6 C -0.099 4.099 7 C 0.064 3.936 8 N -0.522 5.522 9 C 0.167 3.833 10 C -0.515 4.515 11 H 0.038 0.962 12 C 0.020 3.980 13 N -0.949 5.949 14 Si 0.933 3.067 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.259 1.259 18 C 0.106 3.894 19 C 0.121 3.879 20 C -0.157 4.157 21 C -0.077 4.077 22 C -0.172 4.172 23 C 0.067 3.933 24 N -0.508 5.508 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.023 0.977 35 H 0.091 0.909 36 H 0.015 0.985 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.026 0.974 40 H 0.107 0.893 41 H 0.157 0.843 42 H 0.171 0.829 43 H 0.164 0.836 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.733 -10.833 -11.929 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.190 4.190 3 C 0.005 3.995 4 O -0.328 6.328 5 C -0.005 4.005 6 C -0.137 4.137 7 C -0.064 4.064 8 N -0.245 5.245 9 C 0.039 3.961 10 C -0.554 4.554 11 H 0.057 0.943 12 C -0.177 4.177 13 N -0.590 5.590 14 Si 0.758 3.242 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.183 1.183 18 C -0.022 4.022 19 C -0.017 4.017 20 C -0.177 4.177 21 C -0.103 4.103 22 C -0.192 4.192 23 C -0.090 4.090 24 N -0.218 5.218 25 H 0.122 0.878 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.109 0.891 36 H 0.033 0.967 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.125 0.875 41 H 0.175 0.825 42 H 0.189 0.811 43 H 0.182 0.818 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.177 -10.894 -11.458 16.974 hybrid contribution -0.221 0.734 0.963 1.231 sum 5.956 -10.160 -10.495 15.775 Atomic orbital electron populations 1.24059 0.95168 1.03351 0.98276 1.22824 0.96262 0.97938 1.01939 1.21710 0.88700 0.96448 0.92636 1.87863 1.45428 1.37881 1.61620 1.22403 0.92396 0.86423 0.99280 1.21273 0.95928 0.98413 0.98079 1.21876 0.93073 0.96216 0.95215 1.62442 1.12071 1.45871 1.04149 1.19954 0.93804 0.94144 0.88206 1.21640 1.35456 1.01333 0.96937 0.94341 1.25592 0.94641 0.96586 1.00852 1.70053 1.41105 1.24162 1.23727 0.85928 0.77693 0.80692 0.79876 1.19613 1.21113 1.18321 1.20911 0.89626 0.93902 0.97786 1.21254 0.95282 0.94542 0.90587 1.22193 0.93995 0.98826 1.02733 1.21977 0.98501 0.96688 0.93115 1.22422 0.99656 0.99427 0.97663 1.23082 0.89962 0.96219 0.99733 1.67593 1.28389 1.20299 1.05471 0.87820 0.86170 0.86579 0.92747 0.90895 0.94080 0.90855 0.90375 0.94078 0.95850 0.89062 0.96728 0.95335 0.92979 0.95610 0.87487 0.82509 0.81118 0.81823 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 14.31 67.78 0.97 -1.95 16 2 C -0.17 -3.56 9.89 25.65 0.25 -3.31 16 3 C 0.08 1.87 6.35 71.24 0.45 2.33 16 4 O -0.41 -12.41 10.33 -148.98 -1.54 -13.95 16 5 C 0.07 2.10 5.94 71.98 0.43 2.53 16 6 C -0.10 -3.41 5.65 30.59 0.17 -3.23 16 7 C 0.06 2.36 4.81 86.30 0.41 2.78 16 8 N -0.52 -21.54 4.66 -905.36 -4.22 -25.75 16 9 C 0.17 8.37 3.77 85.56 0.32 8.69 16 10 C -0.51 -30.03 7.89 25.60 0.20 -29.83 16 11 H 0.04 2.46 6.20 -2.91 -0.02 2.44 16 12 C 0.02 1.24 5.47 84.65 0.46 1.71 16 13 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 14 Si 0.93 47.78 27.38 68.60 1.88 49.65 16 15 H -0.27 -13.56 7.11 99.48 0.71 -12.86 16 16 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 17 H -0.26 -12.76 6.68 99.48 0.66 -12.10 16 18 C 0.11 4.08 5.09 85.56 0.44 4.52 16 19 C 0.12 4.46 5.70 42.55 0.24 4.70 16 20 C -0.16 -4.26 9.72 22.36 0.22 -4.04 16 21 C -0.08 -1.69 10.18 22.46 0.23 -1.46 16 22 C -0.17 -4.13 10.11 22.36 0.23 -3.90 16 23 C 0.07 2.23 11.18 84.67 0.95 3.18 16 24 N -0.51 -21.24 8.78 -183.88 -1.61 -22.85 16 25 H 0.10 1.62 7.90 -2.91 -0.02 1.60 16 26 H 0.12 1.59 8.06 -2.91 -0.02 1.57 16 27 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.05 1.22 7.86 -2.38 -0.02 1.20 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.04 1.68 6.72 -2.39 -0.02 1.67 16 34 H 0.02 1.02 6.17 -2.39 -0.01 1.01 16 35 H 0.09 2.67 7.81 -2.39 -0.02 2.65 16 36 H 0.01 0.77 6.04 -2.39 -0.01 0.75 16 37 H 0.03 1.50 5.36 -2.39 -0.01 1.49 16 38 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 39 H 0.03 1.21 6.57 -2.39 -0.02 1.20 16 40 H 0.11 3.20 7.76 -2.39 -0.02 3.18 16 41 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 43 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 44 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -75.59 359.65 1.70 -73.89 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.92 Total: 17.21 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 5.98 Total: -17.30 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -5.53 Total: -109.51 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -1.54 Total: -13.95 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.88 Total: 49.65 kcal Total: -75.59 1.70 -73.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348029687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.904 kcal (2) G-P(sol) polarization free energy of solvation -75.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds