Wall clock time and date at job start Tue Mar 31 2020 08:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 C 1.34779 * 119.99763 * 239.99831 * 12 2 1 15 15 O 1.21282 * 120.00170 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00024 * 179.97438 * 14 12 2 17 17 N 1.46893 * 109.47110 * 180.02562 * 16 14 12 18 18 C 1.46901 * 111.00218 * 66.04858 * 17 16 14 19 19 C 1.46899 * 111.00198 * 190.00377 * 17 16 14 20 20 C 1.50701 * 109.47591 * 169.99885 * 19 17 16 21 21 C 1.38227 * 119.99796 * 269.72737 * 20 19 17 22 22 C 1.38237 * 119.99871 * 179.76363 * 21 20 19 23 23 C 1.38240 * 120.00137 * 0.50706 * 22 21 20 24 24 C 1.38238 * 119.99659 * 359.74472 * 23 22 21 25 25 C 1.38233 * 119.99872 * 89.99585 * 20 19 17 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 31 31 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 32 32 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 33 33 H 1.09004 * 109.47134 * 299.99971 * 16 14 12 34 34 H 1.09001 * 109.46597 * 60.00090 * 16 14 12 35 35 H 1.08995 * 109.47112 * 60.00024 * 18 17 16 36 36 H 1.08997 * 109.47326 * 180.02562 * 18 17 16 37 37 H 1.09005 * 109.46946 * 299.99442 * 18 17 16 38 38 H 1.09003 * 109.46929 * 289.99954 * 19 17 16 39 39 H 1.08998 * 109.47304 * 49.99660 * 19 17 16 40 40 H 1.08001 * 120.00181 * 359.97438 * 21 20 19 41 41 H 1.08000 * 120.00243 * 180.22871 * 22 21 20 42 42 H 1.07992 * 120.00580 * 179.72613 * 23 22 21 43 43 H 1.07998 * 120.00098 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00331 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2953 -0.7459 3.3140 17 7 4.1109 0.1775 4.1138 18 6 3.2923 1.2723 4.6516 19 6 4.8098 -0.5356 5.1913 20 6 5.8173 0.3842 5.8316 21 6 7.1112 0.4359 5.3480 22 6 8.0340 1.2833 5.9323 23 6 7.6658 2.0712 7.0068 24 6 6.3731 2.0156 7.4936 25 6 5.4489 1.1721 6.9060 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7093 1.1618 -3.4844 30 1 2.4157 -2.7377 0.9716 31 1 1.6239 -2.2853 2.5002 32 1 0.6905 -2.3003 0.9847 33 1 2.4472 -1.0881 3.9073 34 1 3.9006 -1.6025 3.0176 35 1 2.5069 0.8610 5.2856 36 1 3.9210 1.9413 5.2392 37 1 2.8418 1.8272 3.8287 38 1 4.0874 -0.8608 5.9400 39 1 5.3221 -1.4050 4.7791 40 1 7.4002 -0.1832 4.5116 41 1 9.0440 1.3264 5.5521 42 1 8.3878 2.7299 7.4660 43 1 6.0855 2.6309 8.3333 44 1 4.4392 1.1282 7.2869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349433880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:18 Heat of formation + Delta-G solvation = 5.455947 kcal Electronic energy + Delta-G solvation = -23051.136520 eV Core-core repulsion = 19775.935809 eV Total energy + Delta-G solvation = -3275.200711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.71004 -38.99947 -36.64707 -35.10988 -32.85610 -31.75709 -30.99069 -29.72416 -27.52783 -26.94209 -26.03499 -25.17889 -23.16247 -22.55913 -21.08232 -20.56667 -18.23999 -16.94121 -16.56076 -16.32324 -15.71692 -15.56933 -15.13642 -15.02778 -14.69683 -14.27484 -13.99948 -13.56127 -13.46718 -12.83458 -12.70603 -12.64328 -12.48782 -12.37180 -11.89821 -11.64381 -11.54835 -11.46393 -11.24955 -11.04890 -11.02698 -10.99259 -10.77848 -10.63372 -10.21338 -10.14450 -9.13693 -8.97915 -8.88210 -8.86361 -8.41317 -8.09062 -7.52765 -6.04928 -4.12540 1.25525 1.34500 3.27423 3.35047 3.37666 3.45399 3.54627 3.92410 4.34052 4.45312 4.69152 4.76331 4.92269 5.02159 5.12522 5.22274 5.26771 5.32649 5.41125 5.48010 5.50457 5.57914 5.71141 5.75884 5.78487 5.92137 5.97751 6.07603 6.30004 6.35692 6.38760 6.43414 6.56448 6.76793 6.82756 6.91763 7.02225 7.09894 7.15432 7.48702 7.56946 7.74725 8.04933 8.22927 8.58014 8.87712 9.14146 9.54196 11.00416 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.003194 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.813195 B = 8765.186162 C = 9105.741705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.596 5.596 13 C 0.087 3.913 14 C 0.505 3.495 15 O -0.534 6.534 16 C 0.038 3.962 17 N -0.517 5.517 18 C 0.017 3.983 19 C 0.092 3.908 20 C -0.072 4.072 21 C -0.096 4.096 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.113 4.113 26 H 0.010 0.990 27 H 0.093 0.907 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.016 0.984 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.233 -3.775 18.877 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.329 5.329 13 C -0.057 4.057 14 C 0.291 3.709 15 O -0.411 6.411 16 C -0.093 4.093 17 N -0.240 5.240 18 C -0.131 4.131 19 C -0.036 4.036 20 C -0.073 4.073 21 C -0.115 4.115 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.142 4.142 25 C -0.132 4.132 26 H 0.029 0.971 27 H 0.112 0.888 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.034 0.966 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.627 -2.846 18.289 20.019 hybrid contribution -0.343 -0.943 -0.397 1.080 sum 7.284 -3.789 17.892 19.686 Atomic orbital electron populations 1.22096 0.98363 0.99280 1.00789 1.18913 0.90702 0.94549 0.79978 0.91895 1.21368 1.31596 1.12907 0.90318 0.92269 1.24898 0.94992 0.94993 0.98977 1.69888 1.36555 1.22655 1.23598 0.86445 0.78574 0.79597 0.82799 1.19826 1.20995 1.20911 1.48240 1.49241 1.11620 1.23790 1.21543 1.01662 0.83445 0.99068 1.20174 0.79153 0.87334 0.84271 1.90619 1.57343 1.16892 1.76294 1.22070 0.96882 0.95752 0.94584 1.61613 1.30146 1.10668 1.21622 1.22637 0.95462 0.94471 1.00510 1.21095 0.94881 0.95092 0.92496 1.19721 0.94485 0.97717 0.95331 1.21059 0.92831 0.98690 0.98896 1.21156 0.99605 0.96735 0.96515 1.21125 0.96409 0.99472 0.97185 1.21087 0.93695 0.99194 1.00210 1.21058 0.99246 0.96550 0.96321 0.97064 0.88824 0.95159 0.92782 0.93310 0.93228 0.90888 0.92616 0.88469 0.96581 0.91378 0.88879 0.94109 0.89903 0.85875 0.86159 0.86372 0.86301 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.95 37.16 0.33 -3.19 16 2 C 0.26 6.65 2.64 -69.08 -0.18 6.47 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.27 8.37 -34.44 -0.29 -14.56 16 5 H 0.06 1.60 7.65 -52.48 -0.40 1.19 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.36 11.32 55.43 0.63 -24.73 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.60 -12.70 2.75 -175.26 -0.48 -13.19 16 13 C 0.09 1.43 9.48 59.85 0.57 2.00 16 14 C 0.50 10.48 7.40 -10.98 -0.08 10.39 16 15 O -0.53 -13.27 13.64 5.56 0.08 -13.19 16 16 C 0.04 0.58 4.00 -4.98 -0.02 0.56 16 17 N -0.52 -7.81 4.49 -245.83 -1.10 -8.92 16 18 C 0.02 0.25 8.86 60.07 0.53 0.79 16 19 C 0.09 1.07 5.12 -4.98 -0.03 1.05 16 20 C -0.07 -0.85 4.89 -104.63 -0.51 -1.36 16 21 C -0.10 -1.12 9.70 -39.59 -0.38 -1.50 16 22 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 25 C -0.11 -1.22 7.90 -39.58 -0.31 -1.53 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 28 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16 32 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 33 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 34 H 0.10 1.31 7.90 -51.93 -0.41 0.90 16 35 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.96 5.89 -51.93 -0.31 0.65 16 37 H 0.09 1.71 5.88 -51.93 -0.31 1.40 16 38 H 0.04 0.42 8.07 -51.93 -0.42 0.00 16 39 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.12 7.98 -52.49 -0.42 0.70 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -32.03 351.90 -9.10 -41.13 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.83 Total: 1.54 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.66 Total: -4.14 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.96 Total: -46.84 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.03 -9.10 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349433880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.585 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds