Wall clock time and date at job start Tue Mar 31 2020 08:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 C 1.34779 * 119.99763 * 239.99831 * 12 2 1 15 15 O 1.21282 * 120.00170 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00024 * 179.97438 * 14 12 2 17 17 N 1.46893 * 109.47110 * 180.02562 * 16 14 12 18 18 C 1.46901 * 111.00218 * 66.04858 * 17 16 14 19 19 C 1.46899 * 111.00198 * 190.00377 * 17 16 14 20 20 C 1.50701 * 109.47591 * 169.99885 * 19 17 16 21 21 C 1.38227 * 119.99796 * 269.72737 * 20 19 17 22 22 C 1.38237 * 119.99871 * 179.76363 * 21 20 19 23 23 C 1.38240 * 120.00137 * 0.50706 * 22 21 20 24 24 C 1.38238 * 119.99659 * 359.74472 * 23 22 21 25 25 C 1.38233 * 119.99872 * 89.99585 * 20 19 17 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 31 31 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 32 32 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 33 33 H 1.09004 * 109.47134 * 299.99971 * 16 14 12 34 34 H 1.09001 * 109.46597 * 60.00090 * 16 14 12 35 35 H 1.08995 * 109.47112 * 60.00024 * 18 17 16 36 36 H 1.08997 * 109.47326 * 180.02562 * 18 17 16 37 37 H 1.09005 * 109.46946 * 299.99442 * 18 17 16 38 38 H 1.09003 * 109.46929 * 289.99954 * 19 17 16 39 39 H 1.08998 * 109.47304 * 49.99660 * 19 17 16 40 40 H 1.08001 * 120.00181 * 359.97438 * 21 20 19 41 41 H 1.08000 * 120.00243 * 180.22871 * 22 21 20 42 42 H 1.07992 * 120.00580 * 179.72613 * 23 22 21 43 43 H 1.07998 * 120.00098 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00331 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2953 -0.7459 3.3140 17 7 4.1109 0.1775 4.1138 18 6 3.2923 1.2723 4.6516 19 6 4.8098 -0.5356 5.1913 20 6 5.8173 0.3842 5.8316 21 6 7.1112 0.4359 5.3480 22 6 8.0340 1.2833 5.9323 23 6 7.6658 2.0712 7.0068 24 6 6.3731 2.0156 7.4936 25 6 5.4489 1.1721 6.9060 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7093 1.1618 -3.4844 30 1 2.4157 -2.7377 0.9716 31 1 1.6239 -2.2853 2.5002 32 1 0.6905 -2.3003 0.9847 33 1 2.4472 -1.0881 3.9073 34 1 3.9006 -1.6025 3.0176 35 1 2.5069 0.8610 5.2856 36 1 3.9210 1.9413 5.2392 37 1 2.8418 1.8272 3.8287 38 1 4.0874 -0.8608 5.9400 39 1 5.3221 -1.4050 4.7791 40 1 7.4002 -0.1832 4.5116 41 1 9.0440 1.3264 5.5521 42 1 8.3878 2.7299 7.4660 43 1 6.0855 2.6309 8.3333 44 1 4.4392 1.1282 7.2869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349433880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:15 Heat of formation + Delta-G solvation = -14.419102 kcal Electronic energy + Delta-G solvation = -23051.998367 eV Core-core repulsion = 19775.935809 eV Total energy + Delta-G solvation = -3276.062558 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95325 -40.13952 -37.87787 -36.80663 -34.79233 -32.71816 -31.77562 -31.50840 -28.82454 -27.92458 -27.52580 -27.24257 -24.34113 -23.35782 -22.55678 -21.66526 -19.85451 -18.52087 -18.02136 -17.55517 -17.08283 -16.84476 -16.44192 -16.18420 -15.87340 -15.81492 -15.22426 -14.90349 -14.49009 -14.22791 -14.06779 -13.91849 -13.63868 -13.46199 -13.36916 -13.08649 -12.94019 -12.83410 -12.71933 -12.68515 -12.54050 -12.38820 -12.14790 -12.09730 -11.86620 -11.78672 -11.14795 -10.61420 -10.41737 -9.75151 -9.68093 -9.28178 -9.16311 -8.13740 -6.30248 0.45774 0.55954 1.40457 1.42427 1.53648 1.88326 2.27764 2.45905 2.85242 3.14042 3.27967 3.77688 3.85650 3.99644 4.20729 4.22583 4.30030 4.33553 4.41169 4.49663 4.52353 4.59686 4.66969 4.72477 4.76178 4.82428 4.83465 4.89112 5.05469 5.08998 5.14713 5.16547 5.21216 5.47751 5.59456 5.63411 5.66733 5.70697 5.74443 5.94949 6.08121 6.11687 6.18327 6.19188 6.78863 6.91240 7.35880 7.57267 8.90623 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.003194 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.813195 B = 8765.186162 C = 9105.741705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.005 0.995 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.264 1.264 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.605 5.605 13 C 0.083 3.917 14 C 0.493 3.507 15 O -0.587 6.587 16 C 0.053 3.947 17 N -0.542 5.542 18 C 0.026 3.974 19 C 0.097 3.903 20 C -0.090 4.090 21 C -0.116 4.116 22 C -0.133 4.133 23 C -0.129 4.129 24 C -0.130 4.130 25 C -0.122 4.122 26 H 0.019 0.981 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.264 0.736 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.791 -5.901 20.510 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.161 3.839 3 H 0.023 0.977 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.188 1.188 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.336 5.336 13 C -0.059 4.059 14 C 0.281 3.719 15 O -0.468 6.468 16 C -0.078 4.078 17 N -0.266 5.266 18 C -0.122 4.122 19 C -0.030 4.030 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.140 4.140 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.140 0.860 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.184 -5.020 19.955 22.144 hybrid contribution -0.471 -0.215 -0.846 0.992 sum 7.712 -5.234 19.109 21.261 Atomic orbital electron populations 1.21872 0.97244 1.00107 0.99830 1.18472 0.91495 0.92102 0.81871 0.97655 1.21631 1.31651 1.12940 0.91228 0.92171 1.25755 0.95138 0.95668 1.02090 1.70034 1.37527 1.23973 1.24295 0.85406 0.78216 0.78492 0.78888 1.18823 1.19941 1.21257 1.48253 1.49368 1.13480 1.22548 1.21812 1.01512 0.80412 1.02211 1.21268 0.78152 0.86957 0.85509 1.90600 1.59076 1.19489 1.77660 1.21984 0.98340 0.95326 0.92116 1.61507 1.30462 1.11309 1.23350 1.22446 0.96017 0.94628 0.99113 1.21128 0.94927 0.95011 0.91907 1.19864 0.94635 0.98507 0.96016 1.21238 0.93406 0.99441 0.99357 1.21432 1.00279 0.96606 0.96788 1.21465 0.97003 0.99377 0.96867 1.21426 0.93651 0.99062 1.00676 1.21275 1.00059 0.96504 0.96210 0.96194 0.91561 0.93249 0.92715 0.92626 0.88647 0.91255 0.89433 0.86043 0.94444 0.90921 0.93018 0.92154 0.88689 0.85951 0.84677 0.84185 0.84180 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.95 71.98 0.64 -5.79 16 2 C 0.26 13.91 2.64 44.25 0.12 14.02 16 3 H 0.01 0.35 6.90 -2.39 -0.02 0.33 16 4 C -0.54 -29.60 8.37 25.60 0.21 -29.39 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -53.91 11.32 21.45 0.24 -53.66 16 8 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 12 N -0.60 -25.56 2.75 -826.79 -2.28 -27.84 16 13 C 0.08 2.51 9.48 127.77 1.21 3.72 16 14 C 0.49 20.44 7.40 87.66 0.65 21.09 16 15 O -0.59 -30.54 13.64 -3.04 -0.04 -30.59 16 16 C 0.05 1.47 4.00 85.56 0.34 1.81 16 17 N -0.54 -15.55 4.49 -931.66 -4.18 -19.73 16 18 C 0.03 0.76 8.86 127.69 1.13 1.89 16 19 C 0.10 2.01 5.12 85.56 0.44 2.45 16 20 C -0.09 -1.98 4.89 -19.87 -0.10 -2.08 16 21 C -0.12 -2.59 9.70 22.27 0.22 -2.37 16 22 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 23 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 24 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 25 C -0.12 -2.41 7.90 22.27 0.18 -2.24 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 28 H 0.05 2.16 6.66 -2.39 -0.02 2.14 16 29 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 2.01 6.44 -2.39 -0.02 1.99 16 32 H 0.07 2.15 6.43 -2.39 -0.02 2.14 16 33 H 0.09 1.91 7.38 -2.39 -0.02 1.89 16 34 H 0.12 2.82 7.90 -2.39 -0.02 2.80 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 2.01 5.89 -2.39 -0.01 1.99 16 37 H 0.05 1.96 5.88 -2.38 -0.01 1.95 16 38 H 0.06 1.03 8.07 -2.39 -0.02 1.01 16 39 H 0.09 1.72 7.87 -2.39 -0.02 1.70 16 40 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 42 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 44 H 0.13 2.16 7.98 -2.91 -0.02 2.14 16 Total: -1.00 -73.29 351.90 2.90 -70.39 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.97 Total: 18.05 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 6.16 Total: -2.29 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -6.22 Total: -101.24 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.04 Total: -30.59 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -73.29 2.90 -70.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349433880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.971 kcal (2) G-P(sol) polarization free energy of solvation -73.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds