Wall clock time and date at job start Tue Mar 31 2020 08:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 N 1.46900 * 109.47165 * 180.02562 * 16 14 12 18 18 C 1.46902 * 110.99903 * 66.05132 * 17 16 14 19 19 C 1.46896 * 110.99604 * 190.00280 * 17 16 14 20 20 C 1.50706 * 109.46613 * 169.99958 * 19 17 16 21 21 C 1.38234 * 120.00191 * 269.72611 * 20 19 17 22 22 C 1.38241 * 119.99860 * 179.76782 * 21 20 19 23 23 C 1.38236 * 119.99742 * 0.50846 * 22 21 20 24 24 C 1.38233 * 120.00122 * 359.74528 * 23 22 21 25 25 C 1.38236 * 119.99548 * 90.00239 * 20 19 17 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 31 31 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 32 32 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 33 33 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 34 34 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 35 35 H 1.09002 * 109.47258 * 59.99695 * 18 17 16 36 36 H 1.08996 * 109.47304 * 180.02562 * 18 17 16 37 37 H 1.09005 * 109.46756 * 300.00053 * 18 17 16 38 38 H 1.09001 * 109.47417 * 289.99843 * 19 17 16 39 39 H 1.08995 * 109.47432 * 50.00386 * 19 17 16 40 40 H 1.08002 * 119.99854 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.99816 * 180.22881 * 22 21 20 42 42 H 1.08002 * 119.99606 * 179.72586 * 23 22 21 43 43 H 1.08004 * 119.99603 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.00598 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 7 4.1124 0.1774 -4.1130 18 6 5.3405 0.5485 -3.3974 19 6 4.4230 -0.3985 -5.4281 20 6 5.0436 0.6583 -6.3053 21 6 4.2418 1.4510 -7.1051 22 6 4.8107 2.4236 -7.9060 23 6 6.1822 2.5963 -7.9150 24 6 6.9844 1.8001 -7.1191 25 6 6.4151 0.8310 -6.3142 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7089 1.1611 3.4845 30 1 0.7376 -2.1442 -1.9996 31 1 2.4629 -2.5817 -1.9866 32 1 1.5295 -2.5968 -0.4711 33 1 3.9016 -1.6021 -3.0168 34 1 2.4483 -1.0887 -3.9070 35 1 5.9261 -0.3475 -3.1918 36 1 5.9260 1.2328 -4.0113 37 1 5.0802 1.0360 -2.4578 38 1 5.1219 -1.2261 -5.3066 39 1 3.5059 -0.7624 -5.8913 40 1 3.1707 1.3127 -7.1017 41 1 4.1840 3.0454 -8.5281 42 1 6.6270 3.3532 -8.5440 43 1 8.0560 1.9348 -7.1265 44 1 7.0418 0.2090 -5.6925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349433881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:22 Heat of formation + Delta-G solvation = 4.476588 kcal Electronic energy + Delta-G solvation = -23051.778410 eV Core-core repulsion = 19776.535231 eV Total energy + Delta-G solvation = -3275.243179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.70825 -38.99706 -36.63893 -35.10287 -32.86210 -31.75798 -30.99555 -29.71855 -27.52503 -26.93602 -25.98847 -25.19591 -23.15480 -22.56175 -21.08791 -20.57282 -18.23899 -16.94076 -16.57726 -16.27933 -15.72659 -15.58439 -15.19654 -15.05454 -14.59381 -14.26019 -14.02100 -13.55639 -13.46597 -12.80003 -12.79266 -12.51029 -12.47914 -12.33779 -11.89949 -11.64774 -11.55585 -11.40626 -11.32367 -11.06046 -11.01060 -10.98623 -10.79182 -10.65054 -10.21779 -10.15897 -9.16219 -8.98308 -8.87388 -8.86266 -8.42201 -8.08654 -7.53144 -6.06173 -4.14254 1.25171 1.33979 3.26103 3.33242 3.35490 3.45684 3.54004 3.92038 4.34568 4.44199 4.68836 4.76332 4.91871 5.01916 5.12977 5.22423 5.25378 5.34986 5.41039 5.48015 5.50299 5.57022 5.73637 5.78699 5.80462 5.91706 5.97280 6.04882 6.35847 6.36982 6.42595 6.42930 6.55894 6.77672 6.86163 6.91499 7.03357 7.11224 7.16554 7.48479 7.57899 7.73961 8.05017 8.22427 8.57958 8.85755 9.14195 9.52398 10.99049 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030014 B = 0.003101 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.686267 B = 9026.962491 C = 9184.880616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.596 5.596 13 C 0.084 3.916 14 C 0.505 3.495 15 O -0.534 6.534 16 C 0.038 3.962 17 N -0.517 5.517 18 C 0.016 3.984 19 C 0.091 3.909 20 C -0.072 4.072 21 C -0.097 4.097 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.113 4.113 26 H 0.092 0.908 27 H 0.011 0.989 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.017 0.983 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 -3.755 -18.809 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.211 1.211 12 N -0.329 5.329 13 C -0.060 4.060 14 C 0.291 3.709 15 O -0.412 6.412 16 C -0.093 4.093 17 N -0.241 5.241 18 C -0.131 4.131 19 C -0.036 4.036 20 C -0.072 4.072 21 C -0.115 4.115 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.131 4.131 26 H 0.111 0.889 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.035 0.965 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.003 -2.599 -18.597 20.042 hybrid contribution 0.715 -1.335 1.027 1.830 sum 7.718 -3.934 -17.570 19.590 Atomic orbital electron populations 1.22078 0.98276 0.99304 1.00769 1.18901 0.90809 0.94523 0.79851 0.91922 1.21325 1.31799 1.12962 0.90373 0.92339 1.24897 0.94986 0.94967 0.98942 1.69885 1.36372 1.22540 1.23722 0.86506 0.79150 0.79305 0.82482 1.20635 1.19977 1.21099 1.48240 1.49464 1.11533 1.23616 1.21586 0.98637 0.83483 1.02320 1.20177 0.79573 0.87297 0.83880 1.90618 1.57514 1.16812 1.76219 1.22068 0.98377 0.94039 0.94847 1.61640 1.19437 1.41031 1.01961 1.22645 0.90056 0.99470 1.00960 1.21095 0.99673 0.93419 0.89409 1.19726 0.93327 0.97569 0.96607 1.21047 0.99813 0.95032 0.95641 1.21148 0.95066 0.98311 0.99509 1.21124 0.93973 0.99536 0.99566 1.21092 0.99688 0.96287 0.97083 1.21069 0.94488 0.98669 0.98918 0.88918 0.97010 0.95249 0.92693 0.93917 0.93091 0.90127 0.92480 0.88600 0.96489 0.91413 0.88751 0.94082 0.89954 0.85925 0.86180 0.86373 0.86286 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.67 2.64 -69.09 -0.18 6.48 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.22 7.99 -34.44 -0.28 -14.49 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.25 11.32 55.43 0.63 -24.62 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.60 -12.70 2.75 -175.26 -0.48 -13.19 16 13 C 0.08 1.38 9.24 59.85 0.55 1.94 16 14 C 0.50 10.49 7.40 -10.99 -0.08 10.41 16 15 O -0.53 -13.28 13.64 5.56 0.08 -13.20 16 16 C 0.04 0.57 4.00 -4.98 -0.02 0.55 16 17 N -0.52 -7.83 4.49 -245.82 -1.10 -8.93 16 18 C 0.02 0.25 8.86 60.07 0.53 0.79 16 19 C 0.09 1.06 5.12 -4.98 -0.03 1.04 16 20 C -0.07 -0.84 4.89 -104.62 -0.51 -1.36 16 21 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 22 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 23 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.11 -1.23 7.91 -39.58 -0.31 -1.54 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.67 6.44 -51.92 -0.33 0.34 16 32 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 33 H 0.06 0.78 7.38 -51.93 -0.38 0.40 16 34 H 0.10 1.24 7.90 -51.93 -0.41 0.83 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.98 5.89 -51.93 -0.31 0.67 16 37 H 0.09 1.80 5.88 -51.93 -0.31 1.50 16 38 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 39 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 40 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.12 1.15 7.98 -52.49 -0.42 0.73 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -31.78 352.57 -9.15 -40.93 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.90 Total: 1.74 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.66 Total: -4.07 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.96 Total: -46.74 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.78 -9.15 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349433881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.411 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds