Wall clock time and date at job start Tue Mar 31 2020 08:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 N 1.46900 * 109.47165 * 180.02562 * 16 14 12 18 18 C 1.46902 * 110.99903 * 66.05132 * 17 16 14 19 19 C 1.46896 * 110.99604 * 190.00280 * 17 16 14 20 20 C 1.50706 * 109.46613 * 169.99958 * 19 17 16 21 21 C 1.38234 * 120.00191 * 269.72611 * 20 19 17 22 22 C 1.38241 * 119.99860 * 179.76782 * 21 20 19 23 23 C 1.38236 * 119.99742 * 0.50846 * 22 21 20 24 24 C 1.38233 * 120.00122 * 359.74528 * 23 22 21 25 25 C 1.38236 * 119.99548 * 90.00239 * 20 19 17 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 31 31 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 32 32 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 33 33 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 34 34 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 35 35 H 1.09002 * 109.47258 * 59.99695 * 18 17 16 36 36 H 1.08996 * 109.47304 * 180.02562 * 18 17 16 37 37 H 1.09005 * 109.46756 * 300.00053 * 18 17 16 38 38 H 1.09001 * 109.47417 * 289.99843 * 19 17 16 39 39 H 1.08995 * 109.47432 * 50.00386 * 19 17 16 40 40 H 1.08002 * 119.99854 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.99816 * 180.22881 * 22 21 20 42 42 H 1.08002 * 119.99606 * 179.72586 * 23 22 21 43 43 H 1.08004 * 119.99603 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.00598 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 7 4.1124 0.1774 -4.1130 18 6 5.3405 0.5485 -3.3974 19 6 4.4230 -0.3985 -5.4281 20 6 5.0436 0.6583 -6.3053 21 6 4.2418 1.4510 -7.1051 22 6 4.8107 2.4236 -7.9060 23 6 6.1822 2.5963 -7.9150 24 6 6.9844 1.8001 -7.1191 25 6 6.4151 0.8310 -6.3142 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7089 1.1611 3.4845 30 1 0.7376 -2.1442 -1.9996 31 1 2.4629 -2.5817 -1.9866 32 1 1.5295 -2.5968 -0.4711 33 1 3.9016 -1.6021 -3.0168 34 1 2.4483 -1.0887 -3.9070 35 1 5.9261 -0.3475 -3.1918 36 1 5.9260 1.2328 -4.0113 37 1 5.0802 1.0360 -2.4578 38 1 5.1219 -1.2261 -5.3066 39 1 3.5059 -0.7624 -5.8913 40 1 3.1707 1.3127 -7.1017 41 1 4.1840 3.0454 -8.5281 42 1 6.6270 3.3532 -8.5440 43 1 8.0560 1.9348 -7.1265 44 1 7.0418 0.2090 -5.6925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349433881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:21 Heat of formation + Delta-G solvation = -15.165620 kcal Electronic energy + Delta-G solvation = -23052.630160 eV Core-core repulsion = 19776.535231 eV Total energy + Delta-G solvation = -3276.094929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95061 -40.13734 -37.87603 -36.80285 -34.79029 -32.71711 -31.77393 -31.50649 -28.84225 -27.92568 -27.45588 -27.27897 -24.33916 -23.35603 -22.57356 -21.66692 -19.85278 -18.51991 -18.01103 -17.54974 -17.08701 -16.87486 -16.45354 -16.18927 -15.81913 -15.80496 -15.23395 -14.91075 -14.45641 -14.23262 -13.97736 -13.89407 -13.64860 -13.52515 -13.36067 -13.05958 -12.98679 -12.82571 -12.69476 -12.63406 -12.55485 -12.48206 -12.16897 -12.09887 -11.86071 -11.78514 -11.17015 -10.60442 -10.41338 -9.74973 -9.68181 -9.27180 -9.18786 -8.13845 -6.30657 0.45910 0.56178 1.40784 1.42566 1.52314 1.88702 2.27031 2.45929 2.85415 3.13831 3.27689 3.78369 3.85515 3.99802 4.20954 4.23497 4.29733 4.33021 4.40627 4.49186 4.53511 4.60112 4.67059 4.75582 4.77491 4.80216 4.83611 4.91563 5.06366 5.09343 5.14214 5.16560 5.21402 5.48772 5.59329 5.61940 5.66924 5.69836 5.74190 5.93347 6.08598 6.10781 6.18353 6.19083 6.78396 6.91302 7.35389 7.57328 8.90433 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030014 B = 0.003101 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.686267 B = 9026.962491 C = 9184.880616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.264 3.736 3 H 0.005 0.995 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.270 1.270 11 H -0.287 1.287 12 N -0.605 5.605 13 C 0.080 3.920 14 C 0.492 3.508 15 O -0.588 6.588 16 C 0.052 3.948 17 N -0.539 5.539 18 C 0.026 3.974 19 C 0.096 3.904 20 C -0.090 4.090 21 C -0.114 4.114 22 C -0.132 4.132 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.124 4.124 26 H 0.065 0.935 27 H 0.018 0.982 28 H 0.047 0.953 29 H 0.264 0.736 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.993 -6.003 -20.319 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.023 0.977 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.192 1.192 10 H -0.195 1.195 11 H -0.213 1.213 12 N -0.336 5.336 13 C -0.063 4.063 14 C 0.281 3.719 15 O -0.468 6.468 16 C -0.078 4.078 17 N -0.263 5.263 18 C -0.122 4.122 19 C -0.030 4.030 20 C -0.090 4.090 21 C -0.133 4.133 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.149 4.149 25 C -0.142 4.142 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.143 0.857 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.765 -4.895 -20.141 22.134 hybrid contribution 0.501 -0.565 1.422 1.610 sum 8.266 -5.460 -18.720 21.179 Atomic orbital electron populations 1.21860 0.97323 1.00034 0.99747 1.18459 0.91469 0.92111 0.81830 0.97691 1.21595 1.31799 1.13009 0.91171 0.92029 1.25762 0.95127 0.95632 1.02097 1.70038 1.37451 1.23934 1.24368 0.85449 0.78872 0.78231 0.78413 1.19194 1.19474 1.21283 1.48254 1.49523 1.13426 1.22428 1.21851 1.01296 0.80523 1.02602 1.21264 0.78550 0.86968 0.85117 1.90600 1.59173 1.19474 1.77603 1.21995 0.99731 0.93631 0.92463 1.61542 1.19346 1.42211 1.03211 1.22436 0.90647 1.00004 0.99125 1.21139 1.00936 0.93663 0.87279 1.19864 0.93847 0.98173 0.97142 1.21245 1.00163 0.95629 0.96234 1.21440 0.95765 0.98268 0.99537 1.21465 0.93907 0.99795 0.99550 1.21415 1.00909 0.95893 0.96676 1.21271 0.94453 0.99173 0.99318 0.91601 0.96327 0.93414 0.92698 0.91550 0.89164 0.91445 0.89969 0.85470 0.94789 0.90832 0.93152 0.92428 0.88338 0.85663 0.84526 0.84192 0.84325 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.97 71.98 0.65 -5.80 16 2 C 0.26 13.95 2.64 44.24 0.12 14.07 16 3 H 0.01 0.33 6.90 -2.39 -0.02 0.31 16 4 C -0.54 -29.43 7.99 25.60 0.20 -29.23 16 5 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -53.82 11.32 21.45 0.24 -53.57 16 8 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 12 N -0.60 -25.56 2.75 -826.80 -2.28 -27.83 16 13 C 0.08 2.41 9.24 127.77 1.18 3.59 16 14 C 0.49 20.46 7.40 87.66 0.65 21.11 16 15 O -0.59 -30.60 13.64 -3.03 -0.04 -30.64 16 16 C 0.05 1.46 4.00 85.56 0.34 1.80 16 17 N -0.54 -15.49 4.49 -931.65 -4.18 -19.67 16 18 C 0.03 0.79 8.86 127.69 1.13 1.92 16 19 C 0.10 1.99 5.12 85.56 0.44 2.43 16 20 C -0.09 -1.97 4.89 -19.86 -0.10 -2.07 16 21 C -0.11 -2.46 9.70 22.27 0.22 -2.25 16 22 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 23 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 24 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 25 C -0.12 -2.49 7.91 22.27 0.18 -2.31 16 26 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 27 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.05 2.11 7.67 -2.39 -0.02 2.09 16 29 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.09 2.01 6.44 -2.38 -0.02 2.00 16 32 H 0.07 2.23 7.02 -2.39 -0.02 2.22 16 33 H 0.08 1.92 7.38 -2.39 -0.02 1.90 16 34 H 0.13 2.77 7.90 -2.39 -0.02 2.75 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 2.10 5.89 -2.39 -0.01 2.09 16 37 H 0.05 2.00 5.88 -2.38 -0.01 1.98 16 38 H 0.06 1.01 8.06 -2.39 -0.02 0.99 16 39 H 0.10 1.70 7.87 -2.39 -0.02 1.68 16 40 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 43 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.13 2.23 7.98 -2.91 -0.02 2.21 16 Total: -1.00 -72.88 352.57 2.86 -70.02 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.97 Total: 18.44 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 6.12 Total: -2.05 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -6.22 Total: -101.08 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.04 Total: -30.64 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -72.88 2.86 -70.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349433881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.850 kcal (2) G-P(sol) polarization free energy of solvation -72.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds