Wall clock time and date at job start Tue Mar 31 2020 08:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47047 * 2 1 4 4 C 1.53000 * 109.47109 * 120.00316 * 2 1 3 5 5 C 1.50700 * 109.47244 * 183.71746 * 4 2 1 6 6 H 1.08000 * 119.99648 * 5.07134 * 5 4 2 7 7 C 1.37869 * 119.99975 * 185.07564 * 5 4 2 8 8 N 1.31515 * 120.00112 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00037 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47084 * 59.99351 * 9 7 5 11 11 H 1.48498 * 109.47262 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46890 * 299.99708 * 9 7 5 13 13 N 1.46895 * 109.47182 * 239.99976 * 2 1 3 14 14 C 1.46964 * 110.99900 * 72.32866 * 13 2 1 15 15 C 1.53053 * 109.36386 * 176.81142 * 14 13 2 16 16 N 1.46954 * 109.36611 * 58.40191 * 15 14 13 17 17 C 1.39933 * 111.00180 * 176.80824 * 16 15 14 18 18 C 1.38863 * 120.01960 * 123.52609 * 17 16 15 19 19 C 1.38105 * 119.98208 * 179.72618 * 18 17 16 20 20 C 1.38703 * 120.02018 * 0.56948 * 19 18 17 21 21 O 1.35999 * 119.98160 * 179.70227 * 20 19 18 22 22 C 1.38701 * 120.03227 * 359.68551 * 20 19 18 23 23 C 1.38102 * 120.02145 * 0.03822 * 22 20 19 24 24 C 1.46959 * 110.88148 * 300.68186 * 16 15 14 25 25 C 1.46954 * 111.00205 * 308.52976 * 13 2 1 26 26 H 1.08998 * 109.46903 * 300.00141 * 1 2 3 27 27 H 1.08998 * 109.46826 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47000 * 59.99777 * 1 2 3 29 29 H 1.09003 * 109.46932 * 303.71621 * 4 2 1 30 30 H 1.09000 * 109.47085 * 63.71198 * 4 2 1 31 31 H 0.96998 * 119.99894 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.48663 * 296.77712 * 14 13 2 33 33 H 1.09000 * 109.48739 * 56.84322 * 14 13 2 34 34 H 1.08997 * 109.48796 * 298.43277 * 15 14 13 35 35 H 1.08996 * 109.48548 * 178.36941 * 15 14 13 36 36 H 1.08012 * 120.00655 * 359.97319 * 18 17 16 37 37 H 1.08005 * 119.99017 * 180.27876 * 19 18 17 38 38 H 0.96690 * 114.00174 * 269.97958 * 21 20 19 39 39 H 1.08005 * 119.98321 * 180.02562 * 22 20 19 40 40 H 1.08009 * 120.00962 * 180.02562 * 23 22 20 41 41 H 1.09006 * 109.48417 * 299.35397 * 24 16 15 42 42 H 1.09001 * 109.50913 * 179.30156 * 24 16 15 43 43 H 1.08996 * 109.49008 * 303.15286 * 25 13 2 44 44 H 1.09006 * 109.49042 * 63.20085 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5442 -0.6421 1.2962 6 1 4.0775 -0.0599 0.5592 7 6 4.2395 -1.3128 2.2798 8 7 3.5900 -2.0213 3.1774 9 14 6.1041 -1.2151 2.3376 10 1 6.5206 0.2003 2.5053 11 1 6.6066 -2.0175 3.4817 12 1 6.6672 -1.7502 1.0719 13 7 2.0197 -0.6925 -1.1994 14 6 1.8026 0.1220 -2.4033 15 6 2.3963 -0.5976 -3.6166 16 7 1.7661 -1.9177 -3.7568 17 6 2.2325 -2.5773 -4.8994 18 6 2.8134 -3.8337 -4.7878 19 6 3.2683 -4.4864 -5.9166 20 6 3.1559 -3.8824 -7.1602 21 8 3.6096 -4.5233 -8.2705 22 6 2.5806 -2.6253 -7.2718 23 6 2.1200 -1.9736 -6.1447 24 6 1.9832 -2.7322 -2.5529 25 6 1.3895 -2.0126 -1.3395 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 1.6233 -0.2474 2.1380 30 1 1.7320 -1.7664 1.2165 31 1 4.0792 -2.4929 3.8697 32 1 0.7332 0.2689 -2.5549 33 1 2.2891 1.0896 -2.2803 34 1 3.4703 -0.7202 -3.4771 35 1 2.2109 -0.0089 -4.5151 36 1 2.9057 -4.3020 -3.8189 37 1 3.7160 -5.4656 -5.8305 38 1 4.5342 -4.3359 -8.4826 39 1 2.4931 -2.1559 -8.2406 40 1 1.6718 -0.9948 -6.2319 41 1 3.0526 -2.8791 -2.4012 42 1 1.4970 -3.7000 -2.6757 43 1 1.5749 -2.6013 -0.4411 44 1 0.3154 -1.8900 -1.4788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351613776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:38 Heat of formation + Delta-G solvation = 0.966075 kcal Electronic energy + Delta-G solvation = -23463.112119 eV Core-core repulsion = 20187.716713 eV Total energy + Delta-G solvation = -3275.395406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45221 -38.94910 -37.27573 -35.24076 -32.81965 -31.63162 -31.06480 -30.32663 -28.32183 -27.30681 -25.35693 -24.23198 -23.11263 -21.97804 -21.74294 -20.17319 -18.69534 -18.49208 -17.20903 -16.20891 -15.90451 -15.48032 -15.35444 -14.65414 -14.59429 -14.28359 -14.24233 -14.00137 -13.72509 -13.55219 -12.99410 -12.62218 -12.37633 -12.09752 -11.91524 -11.85920 -11.72263 -11.51482 -11.22818 -11.03387 -10.80911 -10.60885 -10.52716 -10.42561 -10.30951 -9.96392 -9.52468 -9.19018 -9.09769 -9.00891 -8.27795 -7.74403 -7.51494 -5.90703 -3.88509 1.17588 1.25457 3.38424 3.42632 3.42726 3.45779 3.88754 4.15188 4.45687 4.54565 4.73718 4.84663 5.02166 5.23063 5.27798 5.29227 5.46136 5.49398 5.52196 5.57635 5.67664 5.73792 5.75552 5.88348 5.90153 5.92737 6.00900 6.02718 6.12093 6.23603 6.30845 6.35500 6.38329 6.53314 6.56104 6.66272 6.96138 7.04580 7.21640 7.49507 7.55473 7.62756 7.85537 7.98053 8.09870 8.55425 9.16389 9.72968 11.21213 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.003992 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.307233 B = 7012.973143 C = 7949.376680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.031 3.969 5 C -0.489 4.489 6 H 0.058 0.942 7 C 0.052 3.948 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.510 5.510 14 C 0.052 3.948 15 C 0.064 3.936 16 N -0.490 5.490 17 C 0.115 3.885 18 C -0.155 4.155 19 C -0.116 4.116 20 C 0.065 3.935 21 O -0.501 6.501 22 C -0.120 4.120 23 C -0.129 4.129 24 C 0.053 3.947 25 C 0.057 3.943 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.040 0.960 29 H 0.015 0.985 30 H 0.022 0.978 31 H 0.258 0.742 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.384 0.616 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.705 -0.603 -18.418 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.006 4.006 5 C -0.528 4.528 6 H 0.076 0.924 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.234 5.234 14 C -0.077 4.077 15 C -0.062 4.062 16 N -0.205 5.205 17 C 0.017 3.983 18 C -0.176 4.176 19 C -0.135 4.135 20 C 0.020 3.980 21 O -0.311 6.311 22 C -0.139 4.139 23 C -0.149 4.149 24 C -0.074 4.074 25 C -0.071 4.071 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.238 0.762 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.262 -0.873 -18.186 18.497 hybrid contribution 1.348 0.096 0.073 1.353 sum -1.914 -0.777 -18.113 18.231 Atomic orbital electron populations 1.22513 0.99587 1.01455 1.00658 1.21905 0.90168 0.98194 0.91761 0.91325 1.19179 0.96295 0.95501 0.89649 1.21092 0.91585 1.28954 1.11161 0.92410 1.24980 0.97930 0.95855 0.95993 1.69947 1.35246 1.32839 1.16440 0.86714 0.86489 0.77845 0.77210 1.20515 1.21635 1.20469 1.62308 1.57557 1.02182 1.01374 1.22179 0.98650 0.96803 0.90062 1.22302 0.97487 0.87837 0.98549 1.59379 1.54331 1.04720 1.02083 1.19113 0.93825 0.93942 0.91468 1.21323 1.00641 0.96392 0.99241 1.21279 1.00504 1.00215 0.91516 1.18354 1.01804 0.91918 0.85894 1.84871 1.32126 1.70449 1.43607 1.21228 0.99929 0.94007 0.98747 1.20659 1.02788 1.00891 0.90576 1.22426 1.00858 0.96013 0.88084 1.22182 0.95853 0.91732 0.97355 0.92554 0.92712 0.94140 0.96658 0.95982 0.93252 0.94640 0.90385 0.92830 0.90405 0.84810 0.85565 0.76156 0.85552 0.85433 0.92348 0.90213 0.88695 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.39 37.16 0.31 -2.76 16 2 C 0.09 1.72 2.26 -67.71 -0.15 1.57 16 3 H 0.07 1.37 7.98 -51.93 -0.41 0.95 16 4 C 0.03 0.76 4.40 -27.88 -0.12 0.64 16 5 C -0.49 -13.41 8.80 -34.44 -0.30 -13.71 16 6 H 0.06 1.58 7.75 -52.49 -0.41 1.17 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.51 -9.31 4.32 -226.49 -0.98 -10.29 16 14 C 0.05 0.78 5.36 -3.76 -0.02 0.76 16 15 C 0.06 0.86 5.38 -3.77 -0.02 0.84 16 16 N -0.49 -6.86 4.76 -170.90 -0.81 -7.68 16 17 C 0.11 1.51 5.64 -83.70 -0.47 1.03 16 18 C -0.16 -1.95 8.82 -39.40 -0.35 -2.30 16 19 C -0.12 -1.34 9.98 -39.46 -0.39 -1.73 16 20 C 0.07 0.74 6.70 -39.24 -0.26 0.47 16 21 O -0.50 -4.98 13.50 -19.74 -0.27 -5.25 16 22 C -0.12 -1.30 9.98 -39.46 -0.39 -1.69 16 23 C -0.13 -1.49 9.19 -39.40 -0.36 -1.85 16 24 C 0.05 0.79 4.30 -3.76 -0.02 0.78 16 25 C 0.06 0.98 4.70 -3.77 -0.02 0.96 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.92 6.38 -51.93 -0.33 0.59 16 28 H 0.04 0.61 6.85 -51.93 -0.36 0.25 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.02 0.58 6.42 -51.93 -0.33 0.24 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.04 0.52 6.85 -51.93 -0.36 0.17 16 33 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.88 6.82 -51.93 -0.35 0.53 16 36 H 0.13 1.62 5.81 -52.48 -0.30 1.32 16 37 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.38 1.99 9.06 45.56 0.41 2.40 16 39 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 40 H 0.13 1.31 7.19 -52.48 -0.38 0.93 16 41 H 0.06 0.94 7.57 -51.93 -0.39 0.55 16 42 H 0.08 1.08 7.18 -51.93 -0.37 0.70 16 43 H 0.09 1.84 6.37 -51.93 -0.33 1.51 16 44 H 0.04 0.60 6.40 -51.93 -0.33 0.27 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -31.00 341.63 -9.78 -40.78 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.92 Total: 2.25 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.67 Total: -15.63 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -1.06 Total: -44.06 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.27 Total: -5.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.00 -9.78 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351613776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.751 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds