Wall clock time and date at job start Tue Mar 31 2020 08:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47047 * 2 1 4 4 C 1.53000 * 109.47109 * 120.00316 * 2 1 3 5 5 C 1.50700 * 109.47244 * 183.71746 * 4 2 1 6 6 H 1.08000 * 119.99648 * 5.07134 * 5 4 2 7 7 C 1.37869 * 119.99975 * 185.07564 * 5 4 2 8 8 N 1.31515 * 120.00112 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00037 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47084 * 59.99351 * 9 7 5 11 11 H 1.48498 * 109.47262 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46890 * 299.99708 * 9 7 5 13 13 N 1.46895 * 109.47182 * 239.99976 * 2 1 3 14 14 C 1.46964 * 110.99900 * 72.32866 * 13 2 1 15 15 C 1.53053 * 109.36386 * 176.81142 * 14 13 2 16 16 N 1.46954 * 109.36611 * 58.40191 * 15 14 13 17 17 C 1.39933 * 111.00180 * 176.80824 * 16 15 14 18 18 C 1.38863 * 120.01960 * 123.52609 * 17 16 15 19 19 C 1.38105 * 119.98208 * 179.72618 * 18 17 16 20 20 C 1.38703 * 120.02018 * 0.56948 * 19 18 17 21 21 O 1.35999 * 119.98160 * 179.70227 * 20 19 18 22 22 C 1.38701 * 120.03227 * 359.68551 * 20 19 18 23 23 C 1.38102 * 120.02145 * 0.03822 * 22 20 19 24 24 C 1.46959 * 110.88148 * 300.68186 * 16 15 14 25 25 C 1.46954 * 111.00205 * 308.52976 * 13 2 1 26 26 H 1.08998 * 109.46903 * 300.00141 * 1 2 3 27 27 H 1.08998 * 109.46826 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47000 * 59.99777 * 1 2 3 29 29 H 1.09003 * 109.46932 * 303.71621 * 4 2 1 30 30 H 1.09000 * 109.47085 * 63.71198 * 4 2 1 31 31 H 0.96998 * 119.99894 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.48663 * 296.77712 * 14 13 2 33 33 H 1.09000 * 109.48739 * 56.84322 * 14 13 2 34 34 H 1.08997 * 109.48796 * 298.43277 * 15 14 13 35 35 H 1.08996 * 109.48548 * 178.36941 * 15 14 13 36 36 H 1.08012 * 120.00655 * 359.97319 * 18 17 16 37 37 H 1.08005 * 119.99017 * 180.27876 * 19 18 17 38 38 H 0.96690 * 114.00174 * 269.97958 * 21 20 19 39 39 H 1.08005 * 119.98321 * 180.02562 * 22 20 19 40 40 H 1.08009 * 120.00962 * 180.02562 * 23 22 20 41 41 H 1.09006 * 109.48417 * 299.35397 * 24 16 15 42 42 H 1.09001 * 109.50913 * 179.30156 * 24 16 15 43 43 H 1.08996 * 109.49008 * 303.15286 * 25 13 2 44 44 H 1.09006 * 109.49042 * 63.20085 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5442 -0.6421 1.2962 6 1 4.0775 -0.0599 0.5592 7 6 4.2395 -1.3128 2.2798 8 7 3.5900 -2.0213 3.1774 9 14 6.1041 -1.2151 2.3376 10 1 6.5206 0.2003 2.5053 11 1 6.6066 -2.0175 3.4817 12 1 6.6672 -1.7502 1.0719 13 7 2.0197 -0.6925 -1.1994 14 6 1.8026 0.1220 -2.4033 15 6 2.3963 -0.5976 -3.6166 16 7 1.7661 -1.9177 -3.7568 17 6 2.2325 -2.5773 -4.8994 18 6 2.8134 -3.8337 -4.7878 19 6 3.2683 -4.4864 -5.9166 20 6 3.1559 -3.8824 -7.1602 21 8 3.6096 -4.5233 -8.2705 22 6 2.5806 -2.6253 -7.2718 23 6 2.1200 -1.9736 -6.1447 24 6 1.9832 -2.7322 -2.5529 25 6 1.3895 -2.0126 -1.3395 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 1.6233 -0.2474 2.1380 30 1 1.7320 -1.7664 1.2165 31 1 4.0792 -2.4929 3.8697 32 1 0.7332 0.2689 -2.5549 33 1 2.2891 1.0896 -2.2803 34 1 3.4703 -0.7202 -3.4771 35 1 2.2109 -0.0089 -4.5151 36 1 2.9057 -4.3020 -3.8189 37 1 3.7160 -5.4656 -5.8305 38 1 4.5342 -4.3359 -8.4826 39 1 2.4931 -2.1559 -8.2406 40 1 1.6718 -0.9948 -6.2319 41 1 3.0526 -2.8791 -2.4012 42 1 1.4970 -3.7000 -2.6757 43 1 1.5749 -2.6013 -0.4411 44 1 0.3154 -1.8900 -1.4788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351613776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:34 Heat of formation + Delta-G solvation = -20.576628 kcal Electronic energy + Delta-G solvation = -23464.046281 eV Core-core repulsion = 20187.716713 eV Total energy + Delta-G solvation = -3276.329568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47478 -40.03086 -38.37609 -36.36514 -34.77711 -32.73351 -32.46515 -31.41444 -29.56750 -29.00074 -26.55840 -25.38266 -24.99546 -22.97134 -22.79703 -21.51738 -20.08104 -19.32727 -18.34544 -18.24256 -16.94408 -16.67257 -16.46410 -16.31129 -15.83215 -15.58823 -15.34218 -15.22955 -14.91789 -14.57190 -14.40573 -13.92874 -13.76850 -13.52363 -13.19019 -13.13538 -12.92262 -12.83957 -12.75608 -12.57375 -12.43408 -12.25379 -11.98193 -11.91702 -11.56243 -11.31526 -11.10397 -10.95992 -10.52106 -10.46200 -9.96659 -8.92734 -8.71739 -8.08802 -6.13130 0.29069 0.38370 1.41697 1.43636 1.51110 2.47526 2.51551 2.87885 3.08177 3.28064 3.39162 3.80120 3.89974 4.01875 4.05888 4.19217 4.29001 4.35336 4.37931 4.39059 4.45151 4.57369 4.58752 4.60119 4.71317 4.80076 4.88740 4.95000 5.02505 5.04603 5.07264 5.19482 5.21666 5.30298 5.30965 5.49379 5.50304 5.68057 5.72384 5.90337 5.97415 6.22830 6.33053 6.42049 6.52767 6.91364 7.00113 7.52304 9.03035 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.003992 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.307233 B = 7012.973143 C = 7949.376680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 H 0.067 0.933 4 C 0.037 3.963 5 C -0.497 4.497 6 H 0.056 0.944 7 C -0.003 4.003 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.532 5.532 14 C 0.054 3.946 15 C 0.068 3.932 16 N -0.489 5.489 17 C 0.093 3.907 18 C -0.166 4.166 19 C -0.126 4.126 20 C 0.068 3.932 21 O -0.509 6.509 22 C -0.121 4.121 23 C -0.126 4.126 24 C 0.063 3.937 25 C 0.064 3.936 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.065 0.935 29 H -0.010 1.010 30 H -0.002 1.002 31 H 0.258 0.742 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.406 0.594 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.040 0.960 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 0.185 -21.084 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 H 0.085 0.915 4 C 0.000 4.000 5 C -0.535 4.535 6 H 0.074 0.926 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.256 5.256 14 C -0.074 4.074 15 C -0.058 4.058 16 N -0.205 5.205 17 C -0.004 4.004 18 C -0.187 4.187 19 C -0.145 4.145 20 C 0.023 3.977 21 O -0.322 6.322 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.064 4.064 25 C -0.064 4.064 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.008 0.992 30 H 0.016 0.984 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.264 0.736 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.058 0.942 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.930 -0.076 -20.885 21.090 hybrid contribution 1.273 -0.190 0.811 1.521 sum -1.657 -0.266 -20.075 20.145 Atomic orbital electron populations 1.22369 0.97210 1.01592 1.01934 1.21597 0.92018 0.97175 0.90393 0.91452 1.19035 0.95126 0.94469 0.91415 1.21421 0.93072 1.28309 1.10701 0.92578 1.25796 1.02614 0.95681 0.95777 1.70081 1.37005 1.33917 1.17217 0.85685 0.80954 0.78196 0.77238 1.19494 1.21405 1.19939 1.62181 1.58310 1.02933 1.02188 1.22234 0.99470 0.96708 0.88944 1.22310 0.96332 0.88083 0.99032 1.59432 1.54657 1.04635 1.01726 1.19232 0.95241 0.94348 0.91621 1.21381 1.01152 0.96608 0.99539 1.21440 1.00678 1.00823 0.91550 1.18488 1.01252 0.91989 0.86007 1.84811 1.34049 1.70452 1.42888 1.21481 0.99162 0.93815 0.99523 1.20851 1.02267 1.01487 0.90026 1.22247 0.99578 0.96531 0.88050 1.22034 0.96380 0.91121 0.96903 0.92406 0.93139 0.91649 0.99209 0.98360 0.93326 0.93646 0.89651 0.94471 0.87479 0.85304 0.84501 0.73601 0.83308 0.83841 0.94179 0.89055 0.92063 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.65 8.39 71.98 0.60 -5.04 16 2 C 0.10 3.80 2.26 44.92 0.10 3.90 16 3 H 0.07 2.66 7.98 -2.39 -0.02 2.64 16 4 C 0.04 1.88 4.40 29.85 0.13 2.01 16 5 C -0.50 -27.81 8.80 25.60 0.23 -27.59 16 6 H 0.06 3.10 7.75 -2.91 -0.02 3.08 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 8 N -0.94 -57.36 13.29 21.44 0.28 -57.07 16 9 Si 0.95 45.18 29.54 68.60 2.03 47.20 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.53 -19.34 4.32 -870.47 -3.76 -23.11 16 14 C 0.05 1.54 5.36 86.31 0.46 2.00 16 15 C 0.07 1.72 5.38 86.31 0.46 2.18 16 16 N -0.49 -13.03 4.76 -694.61 -3.31 -16.33 16 17 C 0.09 2.30 5.64 38.15 0.22 2.51 16 18 C -0.17 -4.05 8.82 22.39 0.20 -3.85 16 19 C -0.13 -2.73 9.98 22.35 0.22 -2.51 16 20 C 0.07 1.37 6.70 22.49 0.15 1.52 16 21 O -0.51 -8.75 13.50 -93.54 -1.26 -10.01 16 22 C -0.12 -2.26 9.98 22.35 0.22 -2.03 16 23 C -0.13 -2.58 9.19 22.39 0.21 -2.38 16 24 C 0.06 1.90 4.30 86.31 0.37 2.27 16 25 C 0.06 2.22 4.70 86.31 0.41 2.63 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.69 6.38 -2.39 -0.02 1.67 16 28 H 0.06 1.82 6.85 -2.38 -0.02 1.81 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.00 -0.11 6.42 -2.39 -0.02 -0.12 16 31 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.05 1.21 6.85 -2.39 -0.02 1.19 16 33 H 0.09 2.28 8.05 -2.39 -0.02 2.26 16 34 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 2.09 6.82 -2.39 -0.02 2.07 16 36 H 0.13 3.16 5.81 -2.90 -0.02 3.14 16 37 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.41 3.03 9.06 -74.06 -0.67 2.36 16 39 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.14 2.42 7.19 -2.91 -0.02 2.40 16 41 H 0.04 1.34 7.57 -2.38 -0.02 1.32 16 42 H 0.09 2.48 7.18 -2.39 -0.02 2.47 16 43 H 0.06 2.52 6.37 -2.39 -0.02 2.50 16 44 H 0.04 1.45 6.40 -2.38 -0.02 1.43 16 Total: -1.00 -67.14 341.63 -1.25 -68.39 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.33 Total: 14.99 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 4.44 Total: -24.07 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -6.78 Total: -96.52 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.26 Total: -10.01 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -67.14 -1.25 -68.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351613776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.816 kcal (2) G-P(sol) polarization free energy of solvation -67.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds