Wall clock time and date at job start Tue Mar 31 2020 07:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47145 * 2 1 4 4 C 1.52996 * 109.46893 * 119.99922 * 2 1 3 5 5 H 1.09000 * 109.47651 * 299.99849 * 4 2 1 6 6 C 1.52999 * 109.47479 * 60.00191 * 4 2 1 7 7 N 1.46500 * 109.46778 * 180.02562 * 4 2 1 8 8 C 1.46499 * 120.00294 * 299.99969 * 7 4 2 9 9 C 1.34781 * 120.00364 * 120.00491 * 7 4 2 10 10 O 1.21580 * 119.99357 * 359.97438 * 9 7 4 11 11 N 1.34776 * 120.00250 * 180.02562 * 9 7 4 12 12 C 1.39243 * 119.99962 * 185.13225 * 11 9 7 13 13 C 1.39480 * 119.83335 * 214.20549 * 12 11 9 14 14 C 1.36380 * 120.16580 * 179.71293 * 13 12 11 15 15 C 1.40861 * 119.82590 * 0.58002 * 14 13 12 16 16 C 1.41160 * 120.15932 * 179.67415 * 15 14 13 17 17 H 1.07998 * 120.00123 * 205.36201 * 16 15 14 18 18 C 1.39895 * 120.00084 * 25.37025 * 16 15 14 19 19 N 1.30878 * 120.00224 * 16.81812 * 18 16 15 20 20 Si 1.86802 * 120.00146 * 196.81845 * 18 16 15 21 21 H 1.48504 * 109.47024 * 89.99438 * 20 18 16 22 22 H 1.48498 * 109.47102 * 209.99777 * 20 18 16 23 23 H 1.48501 * 109.46811 * 329.99718 * 20 18 16 24 24 C 1.40862 * 119.67855 * 359.69529 * 15 14 13 25 25 C 1.36373 * 119.82774 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.46849 * 299.99738 * 1 2 3 27 27 H 1.09000 * 109.46918 * 59.99758 * 1 2 3 28 28 H 1.08999 * 109.46823 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46849 * 240.00262 * 2 1 3 30 30 H 1.09000 * 109.47055 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46681 * 300.00083 * 3 2 1 32 32 H 1.08997 * 109.46839 * 59.99892 * 3 2 1 33 33 H 1.09010 * 109.46851 * 59.99392 * 6 4 2 34 34 H 1.08992 * 109.47376 * 179.97438 * 6 4 2 35 35 H 1.09001 * 109.47113 * 300.00093 * 6 4 2 36 36 H 1.09005 * 109.47205 * 270.00217 * 8 7 4 37 37 H 1.09005 * 109.46790 * 29.99613 * 8 7 4 38 38 H 1.08995 * 109.47991 * 150.00290 * 8 7 4 39 39 H 0.96993 * 120.00157 * 5.12798 * 11 9 7 40 40 H 1.07997 * 119.91595 * 359.97438 * 13 12 11 41 41 H 1.08003 * 120.08032 * 180.25392 * 14 13 12 42 42 H 0.96996 * 120.00297 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.08666 * 179.97438 * 24 15 14 44 44 H 1.08000 * 119.91577 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1637 1.2493 7 7 3.5050 -0.7207 1.2495 8 6 4.2380 -1.3546 0.1509 9 6 4.1785 -0.1370 2.2606 10 8 3.5702 0.3894 3.1722 11 7 5.5263 -0.1361 2.2606 12 6 6.2222 0.3710 3.3549 13 6 7.4352 1.0314 3.1604 14 6 8.1196 1.5358 4.2267 15 6 7.6043 1.3778 5.5282 16 6 8.3102 1.8911 6.6376 17 1 8.1737 1.4520 7.6148 18 6 9.1866 2.9688 6.4713 19 7 9.1168 3.7089 5.3942 20 14 10.4564 3.3516 7.7868 21 1 11.7093 2.6092 7.4964 22 1 10.7359 4.8101 7.7955 23 1 9.9334 2.9399 9.1143 24 6 6.3814 0.7047 5.7172 25 6 5.7051 0.2115 4.6405 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.8934 -2.6776 0.3592 34 1 1.8937 -2.6776 2.1390 35 1 0.4400 -2.1638 1.2492 36 1 4.4200 -2.4019 0.3921 37 1 3.6490 -1.2896 -0.7641 38 1 5.1902 -0.8442 0.0070 39 1 6.0115 -0.4887 1.4984 40 1 7.8315 1.1472 2.1624 41 1 9.0567 2.0505 4.0741 42 1 9.7247 4.4559 5.2787 43 1 5.9805 0.5794 6.7121 44 1 4.7672 -0.3044 4.7837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357522889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:01 Heat of formation + Delta-G solvation = -11.909301 kcal Electronic energy + Delta-G solvation = -23261.552037 eV Core-core repulsion = 19985.598312 eV Total energy + Delta-G solvation = -3275.953725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.26281 -38.03898 -36.75660 -34.44980 -34.02700 -32.70652 -30.25528 -29.48115 -28.69100 -27.29039 -26.65593 -24.93935 -23.42233 -21.55795 -20.83962 -19.87732 -19.00265 -17.97692 -17.25296 -16.48581 -15.60615 -15.55875 -15.11852 -14.53993 -14.14577 -13.95613 -13.75674 -13.34992 -13.04245 -12.82195 -12.77341 -12.59360 -12.36916 -12.21250 -12.17738 -12.00151 -11.78325 -11.47130 -11.23295 -11.11213 -11.03660 -10.98916 -10.85953 -10.68885 -10.56226 -9.96303 -9.52896 -9.42037 -9.13040 -8.86093 -8.45358 -7.48010 -6.89648 -6.67804 -4.23893 2.70749 2.96502 3.09749 3.13968 3.14374 3.20440 3.76012 3.97173 4.36155 4.62764 4.69001 4.80719 4.93796 5.03418 5.21109 5.32905 5.33840 5.44204 5.55993 5.57979 5.70919 5.74829 5.75402 5.82672 5.90578 5.92909 6.15026 6.19845 6.24621 6.32823 6.48567 6.63406 6.84923 6.96733 7.10100 7.17835 7.33184 7.40784 7.66954 7.92489 8.01815 8.10585 8.34425 8.52256 8.66064 8.94459 8.98074 9.18687 10.23886 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.035653 B = 0.003146 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.170070 B = 8898.738318 C = 8947.559510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.143 4.143 4 C 0.157 3.843 5 H 0.102 0.898 6 C -0.162 4.162 7 N -0.631 5.631 8 C 0.080 3.920 9 C 0.697 3.303 10 O -0.577 6.577 11 N -0.667 5.667 12 C 0.014 3.986 13 C -0.117 4.117 14 C -0.152 4.152 15 C 0.104 3.896 16 C -0.459 4.459 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.795 5.795 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.213 4.213 25 C -0.077 4.077 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.390 0.610 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.279 0.721 43 H 0.094 0.906 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 -8.247 -12.720 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.200 4.200 4 C 0.053 3.947 5 H 0.120 0.880 6 C -0.220 4.220 7 N -0.370 5.370 8 C -0.064 4.064 9 C 0.399 3.601 10 O -0.454 6.454 11 N -0.314 5.314 12 C -0.078 4.078 13 C -0.137 4.137 14 C -0.171 4.171 15 C 0.101 3.899 16 C -0.489 4.489 17 H 0.096 0.904 18 C -0.143 4.143 19 N -0.421 5.421 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.234 4.234 25 C -0.097 4.097 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.225 0.775 40 H 0.106 0.894 41 H 0.139 0.861 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.027 -7.656 -12.147 17.513 hybrid contribution 0.889 0.132 -0.037 0.900 sum -9.137 -7.524 -12.184 16.987 Atomic orbital electron populations 1.21866 0.94649 1.01824 1.02044 1.21468 0.95903 0.96928 0.98139 1.21753 1.01423 0.95337 1.01484 1.20941 0.78441 0.95923 0.99431 0.87953 1.22200 1.01284 0.96387 1.02125 1.47046 1.05977 1.60600 1.23337 1.21625 0.96756 0.97574 0.90413 1.15941 0.82183 0.79546 0.82400 1.90899 1.67480 1.50184 1.36788 1.42287 1.03894 1.64608 1.20607 1.16984 0.96252 1.09258 0.85345 1.20190 0.95757 1.00010 0.97751 1.20873 1.00931 1.03358 0.91984 1.17642 0.89808 0.89412 0.93053 1.19544 1.20537 1.12919 0.95922 0.90445 1.25906 0.96992 0.95000 0.96406 1.69850 1.32381 1.13219 1.26651 0.86309 0.80900 0.77891 0.81577 1.19347 1.20394 1.18654 1.20645 0.96957 1.09081 0.96673 1.20248 0.98498 0.99817 0.91149 0.92356 0.92636 0.92336 0.91295 0.92648 0.93140 0.92409 0.92654 0.92284 0.91361 0.92993 0.91101 0.91750 0.77529 0.89357 0.86129 0.90970 0.88786 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.84 37.16 0.33 -0.88 16 2 C -0.10 -1.04 2.35 -90.62 -0.21 -1.25 16 3 C -0.14 -1.67 9.04 37.16 0.34 -1.34 16 4 C 0.16 1.90 2.23 -67.93 -0.15 1.75 16 5 H 0.10 1.54 6.90 -51.93 -0.36 1.18 16 6 C -0.16 -1.57 8.84 37.16 0.33 -1.24 16 7 N -0.63 -8.60 2.00 -179.67 -0.36 -8.96 16 8 C 0.08 0.78 9.31 59.85 0.56 1.33 16 9 C 0.70 13.04 8.00 -86.91 -0.70 12.34 16 10 O -0.58 -13.26 13.39 5.29 0.07 -13.19 16 11 N -0.67 -12.44 5.19 -14.10 -0.07 -12.52 16 12 C 0.01 0.33 6.27 -83.57 -0.52 -0.19 16 13 C -0.12 -2.73 9.90 -39.79 -0.39 -3.13 16 14 C -0.15 -3.97 8.63 -39.26 -0.34 -4.30 16 15 C 0.10 2.83 5.57 -106.80 -0.59 2.24 16 16 C -0.46 -12.42 9.04 -37.85 -0.34 -12.76 16 17 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 18 C 0.07 1.89 5.15 -17.34 -0.09 1.80 16 19 N -0.80 -20.86 10.95 55.55 0.61 -20.25 16 20 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.21 -5.57 9.74 -39.26 -0.38 -5.95 16 25 C -0.08 -1.91 8.57 -39.79 -0.34 -2.26 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 29 H 0.07 0.61 6.66 -51.93 -0.35 0.26 16 30 H 0.05 0.74 7.60 -51.93 -0.39 0.35 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.46 7.67 -51.92 -0.40 0.06 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.55 6.43 -51.93 -0.33 0.21 16 38 H 0.06 0.59 6.29 -51.93 -0.33 0.27 16 39 H 0.39 5.85 6.51 -40.82 -0.27 5.58 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.12 3.22 6.18 -52.48 -0.32 2.90 16 42 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 43 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 44 H 0.10 2.50 6.47 -52.49 -0.34 2.16 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -31.01 348.62 -8.73 -39.74 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.69 Total: 9.90 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.52 Total: -13.85 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.18 Total: -41.73 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.07 Total: -13.19 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.01 -8.73 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357522889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.829 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds