Wall clock time and date at job start Tue Mar 31 2020 07:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47145 * 2 1 4 4 C 1.52996 * 109.46893 * 119.99922 * 2 1 3 5 5 H 1.09000 * 109.47651 * 299.99849 * 4 2 1 6 6 C 1.52999 * 109.47479 * 60.00191 * 4 2 1 7 7 N 1.46500 * 109.46778 * 180.02562 * 4 2 1 8 8 C 1.46499 * 120.00294 * 299.99969 * 7 4 2 9 9 C 1.34781 * 120.00364 * 120.00491 * 7 4 2 10 10 O 1.21580 * 119.99357 * 359.97438 * 9 7 4 11 11 N 1.34776 * 120.00250 * 180.02562 * 9 7 4 12 12 C 1.39243 * 119.99962 * 185.13225 * 11 9 7 13 13 C 1.39480 * 119.83335 * 214.20549 * 12 11 9 14 14 C 1.36380 * 120.16580 * 179.71293 * 13 12 11 15 15 C 1.40861 * 119.82590 * 0.58002 * 14 13 12 16 16 C 1.41160 * 120.15932 * 179.67415 * 15 14 13 17 17 H 1.07998 * 120.00123 * 205.36201 * 16 15 14 18 18 C 1.39895 * 120.00084 * 25.37025 * 16 15 14 19 19 N 1.30878 * 120.00224 * 16.81812 * 18 16 15 20 20 Si 1.86802 * 120.00146 * 196.81845 * 18 16 15 21 21 H 1.48504 * 109.47024 * 89.99438 * 20 18 16 22 22 H 1.48498 * 109.47102 * 209.99777 * 20 18 16 23 23 H 1.48501 * 109.46811 * 329.99718 * 20 18 16 24 24 C 1.40862 * 119.67855 * 359.69529 * 15 14 13 25 25 C 1.36373 * 119.82774 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.46849 * 299.99738 * 1 2 3 27 27 H 1.09000 * 109.46918 * 59.99758 * 1 2 3 28 28 H 1.08999 * 109.46823 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46849 * 240.00262 * 2 1 3 30 30 H 1.09000 * 109.47055 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46681 * 300.00083 * 3 2 1 32 32 H 1.08997 * 109.46839 * 59.99892 * 3 2 1 33 33 H 1.09010 * 109.46851 * 59.99392 * 6 4 2 34 34 H 1.08992 * 109.47376 * 179.97438 * 6 4 2 35 35 H 1.09001 * 109.47113 * 300.00093 * 6 4 2 36 36 H 1.09005 * 109.47205 * 270.00217 * 8 7 4 37 37 H 1.09005 * 109.46790 * 29.99613 * 8 7 4 38 38 H 1.08995 * 109.47991 * 150.00290 * 8 7 4 39 39 H 0.96993 * 120.00157 * 5.12798 * 11 9 7 40 40 H 1.07997 * 119.91595 * 359.97438 * 13 12 11 41 41 H 1.08003 * 120.08032 * 180.25392 * 14 13 12 42 42 H 0.96996 * 120.00297 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.08666 * 179.97438 * 24 15 14 44 44 H 1.08000 * 119.91577 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1637 1.2493 7 7 3.5050 -0.7207 1.2495 8 6 4.2380 -1.3546 0.1509 9 6 4.1785 -0.1370 2.2606 10 8 3.5702 0.3894 3.1722 11 7 5.5263 -0.1361 2.2606 12 6 6.2222 0.3710 3.3549 13 6 7.4352 1.0314 3.1604 14 6 8.1196 1.5358 4.2267 15 6 7.6043 1.3778 5.5282 16 6 8.3102 1.8911 6.6376 17 1 8.1737 1.4520 7.6148 18 6 9.1866 2.9688 6.4713 19 7 9.1168 3.7089 5.3942 20 14 10.4564 3.3516 7.7868 21 1 11.7093 2.6092 7.4964 22 1 10.7359 4.8101 7.7955 23 1 9.9334 2.9399 9.1143 24 6 6.3814 0.7047 5.7172 25 6 5.7051 0.2115 4.6405 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.8934 -2.6776 0.3592 34 1 1.8937 -2.6776 2.1390 35 1 0.4400 -2.1638 1.2492 36 1 4.4200 -2.4019 0.3921 37 1 3.6490 -1.2896 -0.7641 38 1 5.1902 -0.8442 0.0070 39 1 6.0115 -0.4887 1.4984 40 1 7.8315 1.1472 2.1624 41 1 9.0567 2.0505 4.0741 42 1 9.7247 4.4559 5.2787 43 1 5.9805 0.5794 6.7121 44 1 4.7672 -0.3044 4.7837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357522889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:51 Heat of formation + Delta-G solvation = -28.629007 kcal Electronic energy + Delta-G solvation = -23262.277058 eV Core-core repulsion = 19985.598312 eV Total energy + Delta-G solvation = -3276.678745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 7.96 seconds Orbital eigenvalues (eV) -41.66571 -39.60530 -38.20435 -36.17201 -35.35072 -34.32794 -31.52510 -31.22998 -30.43504 -28.11571 -27.67790 -26.67063 -24.56269 -23.30643 -22.61437 -21.27091 -20.12569 -19.43263 -19.16654 -17.98755 -17.10794 -16.82332 -16.74477 -15.75787 -15.45126 -15.35176 -15.19000 -14.59777 -14.53278 -14.26579 -13.98915 -13.77699 -13.72371 -13.49572 -13.31317 -13.12929 -13.02705 -12.87868 -12.83579 -12.76063 -12.45770 -12.29612 -11.92144 -11.77708 -11.69708 -11.43542 -11.43079 -11.18097 -10.96465 -10.67982 -9.60405 -9.46017 -8.79931 -8.57551 -6.25835 0.86139 1.14412 1.39716 1.49078 1.53341 1.73466 2.20987 2.23866 2.77062 3.10055 3.71465 3.74655 3.97672 4.10097 4.24053 4.37417 4.42136 4.49580 4.50408 4.56512 4.67554 4.77116 4.82570 4.90295 4.92762 4.94822 5.02293 5.05699 5.12464 5.15538 5.16744 5.27080 5.30095 5.43407 5.44736 5.46713 5.62329 5.69621 5.84814 6.05030 6.11988 6.18533 6.38847 6.66515 6.94303 7.01340 7.06732 7.67960 8.35323 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.035653 B = 0.003146 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.170070 B = 8898.738318 C = 8947.559510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.141 4.141 4 C 0.150 3.850 5 H 0.063 0.937 6 C -0.153 4.153 7 N -0.620 5.620 8 C 0.070 3.930 9 C 0.692 3.308 10 O -0.627 6.627 11 N -0.660 5.660 12 C 0.029 3.971 13 C -0.114 4.114 14 C -0.168 4.168 15 C 0.074 3.926 16 C -0.497 4.497 17 H 0.073 0.927 18 C 0.034 3.966 19 N -0.826 5.826 20 Si 0.986 3.014 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.231 4.231 25 C -0.088 4.088 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.410 0.590 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.289 0.711 43 H 0.092 0.908 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 -9.321 -15.239 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.199 4.199 4 C 0.046 3.954 5 H 0.081 0.919 6 C -0.211 4.211 7 N -0.356 5.356 8 C -0.072 4.072 9 C 0.394 3.606 10 O -0.508 6.508 11 N -0.309 5.309 12 C -0.065 4.065 13 C -0.135 4.135 14 C -0.188 4.188 15 C 0.071 3.929 16 C -0.527 4.527 17 H 0.092 0.908 18 C -0.180 4.180 19 N -0.452 5.452 20 Si 0.806 3.194 21 H -0.183 1.183 22 H -0.193 1.193 23 H -0.185 1.185 24 C -0.252 4.252 25 C -0.108 4.108 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.249 0.751 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.130 -8.778 -14.748 19.930 hybrid contribution 0.770 0.417 0.604 1.064 sum -9.360 -8.361 -14.145 18.910 Atomic orbital electron populations 1.21859 0.93148 1.03035 1.02082 1.21440 0.97059 0.95350 0.97659 1.21747 1.00146 0.96887 1.01108 1.21120 0.77438 0.97669 0.99128 0.91867 1.22141 1.02399 0.94206 1.02385 1.47105 1.06713 1.59071 1.22746 1.21973 0.97181 0.98115 0.89934 1.16170 0.81965 0.79527 0.82958 1.90870 1.68386 1.52383 1.39177 1.42074 1.04128 1.64600 1.20126 1.17023 0.95963 1.07505 0.86001 1.20439 0.95508 0.98847 0.98659 1.20892 1.01133 1.04325 0.92441 1.17957 0.90474 0.90399 0.94059 1.19770 1.22614 1.14421 0.95853 0.90839 1.26763 0.98321 0.94056 0.98888 1.69889 1.33210 1.13698 1.28425 0.85157 0.77898 0.78105 0.78227 1.18306 1.19254 1.18530 1.20763 0.97238 1.09963 0.97198 1.20323 0.98328 1.00212 0.91974 0.93766 0.91225 0.90539 0.88693 0.94499 0.91122 0.95169 0.90212 0.94106 0.89542 0.91332 0.88151 0.91107 0.75107 0.85969 0.87036 0.90064 0.88934 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.84 71.98 0.64 -1.36 16 2 C -0.10 -1.66 2.35 -10.79 -0.03 -1.69 16 3 C -0.14 -3.18 9.04 71.98 0.65 -2.53 16 4 C 0.15 3.45 2.23 44.99 0.10 3.55 16 5 H 0.06 1.98 6.90 -2.39 -0.02 1.96 16 6 C -0.15 -2.58 8.84 71.98 0.64 -1.94 16 7 N -0.62 -15.96 2.00 -840.62 -1.68 -17.63 16 8 C 0.07 1.10 9.31 127.77 1.19 2.29 16 9 C 0.69 25.82 8.00 179.05 1.43 27.25 16 10 O -0.63 -29.92 13.39 -3.97 -0.05 -29.97 16 11 N -0.66 -24.04 5.19 -316.78 -1.64 -25.68 16 12 C 0.03 1.35 6.27 38.57 0.24 1.60 16 13 C -0.11 -5.33 9.90 22.14 0.22 -5.11 16 14 C -0.17 -8.99 8.63 22.48 0.19 -8.80 16 15 C 0.07 4.19 5.57 -21.28 -0.12 4.08 16 16 C -0.50 -27.89 9.04 23.39 0.21 -27.68 16 17 H 0.07 4.01 7.90 -2.91 -0.02 3.98 16 18 C 0.03 1.77 5.15 85.24 0.44 2.21 16 19 N -0.83 -44.03 10.95 21.82 0.24 -43.80 16 20 Si 0.99 39.02 29.59 68.60 2.03 41.05 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 22 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 C -0.23 -12.67 9.74 22.48 0.22 -12.45 16 25 C -0.09 -4.53 8.57 22.14 0.19 -4.34 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.81 6.43 -2.39 -0.02 0.79 16 29 H 0.09 1.21 6.66 -2.39 -0.02 1.20 16 30 H 0.04 0.94 7.60 -2.39 -0.02 0.93 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.97 7.67 -2.38 -0.02 0.95 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 1.15 6.43 -2.39 -0.02 1.14 16 36 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 37 H 0.10 1.04 6.43 -2.38 -0.02 1.03 16 38 H 0.07 1.05 6.29 -2.39 -0.02 1.04 16 39 H 0.41 11.39 6.51 -92.71 -0.60 10.78 16 40 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 41 H 0.11 6.11 6.18 -2.91 -0.02 6.09 16 42 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 43 H 0.09 4.90 8.06 -2.91 -0.02 4.87 16 44 H 0.10 5.01 6.47 -2.91 -0.02 4.99 16 Total: -1.00 -71.52 348.62 5.51 -66.01 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: 0.40 Total: 34.94 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 6.22 Total: -24.93 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -3.08 Total: -87.11 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.05 Total: -29.97 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -71.52 5.51 -66.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357522889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.386 kcal (2) G-P(sol) polarization free energy of solvation -71.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.96 seconds