Wall clock time and date at job start Tue Mar 31 2020 07:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 C 1.52998 * 109.47047 * 120.00343 * 2 1 3 5 5 H 1.08998 * 109.46819 * 304.47942 * 4 2 1 6 6 C 1.53002 * 109.46949 * 184.48314 * 4 2 1 7 7 N 1.46497 * 109.47528 * 64.48096 * 4 2 1 8 8 C 1.46506 * 119.99671 * 64.20851 * 7 4 2 9 9 C 1.34778 * 120.00391 * 244.48800 * 7 4 2 10 10 O 1.21582 * 119.99670 * 359.72283 * 9 7 4 11 11 N 1.34775 * 120.00322 * 179.72275 * 9 7 4 12 12 C 1.39238 * 120.00094 * 183.92640 * 11 9 7 13 13 C 1.39485 * 119.83112 * 324.35698 * 12 11 9 14 14 C 1.36372 * 120.16701 * 179.76165 * 13 12 11 15 15 C 1.40872 * 119.82866 * 0.51360 * 14 13 12 16 16 C 1.41156 * 120.16378 * 179.72278 * 15 14 13 17 17 H 1.08003 * 119.99808 * 213.96032 * 16 15 14 18 18 C 1.39898 * 120.00217 * 33.95834 * 16 15 14 19 19 N 1.30879 * 119.99932 * 5.77652 * 18 16 15 20 20 Si 1.86797 * 119.99688 * 185.77506 * 18 16 15 21 21 H 1.48500 * 109.47003 * 90.00257 * 20 18 16 22 22 H 1.48505 * 109.46979 * 209.99483 * 20 18 16 23 23 H 1.48494 * 109.47737 * 329.99976 * 20 18 16 24 24 C 1.40865 * 119.67089 * 359.73563 * 15 14 13 25 25 C 1.36371 * 119.83091 * 0.02562 * 24 15 14 26 26 H 1.09003 * 109.47069 * 300.00002 * 1 2 3 27 27 H 1.08997 * 109.47388 * 59.99836 * 1 2 3 28 28 H 1.09000 * 109.47302 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47069 * 239.99998 * 2 1 3 30 30 H 1.08994 * 109.47066 * 305.25643 * 3 2 1 31 31 H 1.09004 * 109.47016 * 65.25724 * 3 2 1 32 32 H 1.09006 * 109.46783 * 185.25771 * 3 2 1 33 33 H 1.08997 * 109.47086 * 59.99522 * 6 4 2 34 34 H 1.09004 * 109.46894 * 179.97438 * 6 4 2 35 35 H 1.08998 * 109.47056 * 299.99483 * 6 4 2 36 36 H 1.09003 * 109.46788 * 264.85222 * 8 7 4 37 37 H 1.08998 * 109.47149 * 24.85180 * 8 7 4 38 38 H 1.09002 * 109.46829 * 144.85324 * 8 7 4 39 39 H 0.97000 * 120.00000 * 3.92147 * 11 9 7 40 40 H 1.07996 * 119.91395 * 0.02562 * 13 12 11 41 41 H 1.08000 * 120.08860 * 180.25521 * 14 13 12 42 42 H 0.96996 * 120.00053 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.08441 * 179.97438 * 24 15 14 44 44 H 1.08006 * 119.91941 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6126 -0.2559 2.1373 6 6 3.5658 -0.6244 1.3068 7 7 1.6418 -2.1301 1.1965 8 6 2.1665 -3.0006 0.1413 9 6 0.7884 -2.6242 2.1153 10 8 0.3530 -1.9018 2.9909 11 7 0.4177 -3.9189 2.0634 12 6 -0.5261 -4.4094 2.9620 13 6 -0.5531 -3.9287 4.2711 14 6 -1.4776 -4.4008 5.1555 15 6 -2.3999 -5.3842 4.7470 16 6 -3.3561 -5.8821 5.6582 17 1 -3.6697 -6.9140 5.6017 18 6 -3.8974 -5.0388 6.6344 19 7 -3.6042 -3.7633 6.6331 20 14 -5.0388 -5.7335 7.9398 21 1 -4.2408 -6.1697 9.1138 22 1 -6.0055 -4.6873 8.3596 23 1 -5.7775 -6.8957 7.3840 24 6 -2.3629 -5.8684 3.4247 25 6 -1.4357 -5.3833 2.5502 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6018 1.9828 -0.8391 31 1 1.7555 1.9284 0.9334 32 1 3.1260 1.4439 -0.0942 33 1 3.8621 0.4238 1.3460 34 1 3.9291 -1.1379 2.1970 35 1 3.9932 -1.0898 0.4187 36 1 1.4552 -3.0406 -0.6838 37 1 3.1168 -2.6049 -0.2171 38 1 2.3177 -4.0039 0.5397 39 1 0.8084 -4.5090 1.4001 40 1 0.1572 -3.1778 4.5839 41 1 -1.5001 -4.0248 6.1677 42 1 -3.9793 -3.1787 7.3101 43 1 -3.0665 -6.6226 3.1045 44 1 -1.4058 -5.7538 1.5362 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357522890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:07 Heat of formation + Delta-G solvation = -11.392321 kcal Electronic energy + Delta-G solvation = -23351.930314 eV Core-core repulsion = 20075.999007 eV Total energy + Delta-G solvation = -3275.931307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.25900 -38.03765 -36.73362 -34.44655 -34.01790 -32.65856 -30.20365 -29.43062 -28.69965 -27.33956 -26.62499 -24.91083 -23.36292 -21.38549 -21.02428 -19.80757 -19.00022 -17.98644 -17.20293 -16.45110 -15.72935 -15.51649 -14.99278 -14.48829 -14.21432 -13.92353 -13.68869 -13.47949 -13.03470 -12.86516 -12.68849 -12.52557 -12.30069 -12.22002 -12.15986 -11.97555 -11.70265 -11.44143 -11.36977 -11.11276 -11.02899 -10.90901 -10.84346 -10.54756 -10.44043 -9.87780 -9.81652 -9.44436 -9.05858 -8.67192 -8.44695 -7.45511 -6.81559 -6.56796 -4.24339 2.73597 2.97310 3.11559 3.14421 3.16990 3.21837 3.76084 4.03612 4.37221 4.63912 4.78512 4.85405 4.94335 5.03352 5.22371 5.27378 5.38684 5.44101 5.54135 5.61425 5.69896 5.73056 5.79718 5.86247 5.92415 5.94671 6.15970 6.19304 6.23856 6.37916 6.45266 6.63195 6.88559 7.00224 7.11770 7.21079 7.35250 7.39995 7.70628 7.87453 8.06954 8.15164 8.35231 8.51375 8.72708 8.99200 9.00769 9.18833 10.38035 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.003428 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.187491 B = 8166.684374 C = 8580.913160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.146 4.146 4 C 0.157 3.843 5 H 0.103 0.897 6 C -0.163 4.163 7 N -0.631 5.631 8 C 0.079 3.921 9 C 0.697 3.303 10 O -0.572 6.572 11 N -0.668 5.668 12 C 0.024 3.976 13 C -0.092 4.092 14 C -0.141 4.141 15 C 0.104 3.896 16 C -0.467 4.467 17 H 0.075 0.925 18 C 0.071 3.929 19 N -0.806 5.806 20 Si 0.911 3.089 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.205 4.205 25 C -0.114 4.114 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.390 0.610 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.278 0.722 43 H 0.096 0.904 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.962 5.193 -12.557 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.203 4.203 4 C 0.052 3.948 5 H 0.121 0.879 6 C -0.221 4.221 7 N -0.370 5.370 8 C -0.065 4.065 9 C 0.399 3.601 10 O -0.449 6.449 11 N -0.316 5.316 12 C -0.069 4.069 13 C -0.112 4.112 14 C -0.161 4.161 15 C 0.101 3.899 16 C -0.498 4.498 17 H 0.093 0.907 18 C -0.144 4.144 19 N -0.433 5.433 20 Si 0.736 3.264 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.225 4.225 25 C -0.135 4.135 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.224 0.776 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.580 5.950 -11.786 17.562 hybrid contribution -0.411 -0.560 0.047 0.696 sum 11.170 5.390 -11.738 17.077 Atomic orbital electron populations 1.21749 0.94614 1.02140 1.01449 1.21467 0.96640 0.96115 0.98098 1.21869 1.00779 0.95609 1.02093 1.20963 0.94119 0.80256 0.99421 0.87926 1.22223 0.95535 1.02320 1.02050 1.47060 1.49261 1.10415 1.30248 1.21638 0.99466 0.94380 0.91033 1.15951 0.79581 0.82396 0.82126 1.90915 1.58702 1.58331 1.36919 1.42249 1.44152 1.08200 1.36950 1.17068 0.96343 1.03888 0.89598 1.20612 0.99808 0.99266 0.91509 1.21039 0.94870 1.00800 0.99406 1.17673 0.90582 0.90752 0.90844 1.19461 1.20633 0.97740 1.11987 0.90669 1.25863 0.96627 0.94487 0.97465 1.69817 1.37998 1.04053 1.31389 0.86270 0.79900 0.79438 0.80753 1.19517 1.20410 1.18827 1.20641 1.01657 1.06164 0.94067 1.20045 0.96069 0.99690 0.97662 0.92358 0.93203 0.92681 0.91404 0.92657 0.92358 0.92448 0.91207 0.92262 0.92533 0.93078 0.90812 0.91888 0.77567 0.87446 0.86309 0.91091 0.88609 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.08 37.16 0.34 -1.44 16 2 C -0.10 -1.08 2.51 -90.62 -0.23 -1.30 16 3 C -0.15 -1.24 8.54 37.16 0.32 -0.93 16 4 C 0.16 1.92 2.22 -67.93 -0.15 1.77 16 5 H 0.10 1.57 6.91 -51.93 -0.36 1.21 16 6 C -0.16 -1.54 8.63 37.16 0.32 -1.22 16 7 N -0.63 -8.63 2.19 -179.67 -0.39 -9.02 16 8 C 0.08 0.75 9.20 59.85 0.55 1.30 16 9 C 0.70 13.08 8.06 -86.92 -0.70 12.38 16 10 O -0.57 -13.31 13.13 5.29 0.07 -13.24 16 11 N -0.67 -12.34 5.18 -14.10 -0.07 -12.41 16 12 C 0.02 0.54 6.30 -83.57 -0.53 0.02 16 13 C -0.09 -2.35 8.61 -39.79 -0.34 -2.69 16 14 C -0.14 -3.87 8.57 -39.26 -0.34 -4.21 16 15 C 0.10 2.85 5.51 -106.80 -0.59 2.26 16 16 C -0.47 -12.72 9.03 -37.85 -0.34 -13.06 16 17 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 18 C 0.07 1.86 5.31 -17.34 -0.09 1.77 16 19 N -0.81 -22.05 10.94 55.55 0.61 -21.45 16 20 Si 0.91 19.45 29.56 -169.99 -5.03 14.42 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.21 -5.07 9.74 -39.26 -0.38 -5.45 16 25 C -0.11 -2.56 9.90 -39.79 -0.39 -2.95 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.80 7.69 -51.93 -0.40 0.40 16 29 H 0.07 0.64 7.64 -51.93 -0.40 0.24 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.41 6.67 -51.93 -0.35 0.07 16 33 H 0.07 0.56 6.47 -51.93 -0.34 0.23 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.55 6.21 -51.93 -0.32 0.23 16 38 H 0.06 0.56 6.60 -51.93 -0.34 0.22 16 39 H 0.39 5.71 6.63 -40.82 -0.27 5.44 16 40 H 0.11 2.79 6.26 -52.49 -0.33 2.47 16 41 H 0.12 3.40 6.44 -52.49 -0.34 3.06 16 42 H 0.28 6.99 8.30 -40.82 -0.34 6.66 16 43 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 44 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -31.47 348.69 -8.82 -40.29 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.71 Total: 9.91 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.56 Total: -13.76 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.14 Total: -42.88 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.07 Total: -13.24 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.47 -8.82 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357522890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.901 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds