Wall clock time and date at job start Tue Mar 31 2020 08:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47324 * 2 1 4 4 C 1.53006 * 109.47074 * 119.99732 * 2 1 3 5 5 C 1.50695 * 109.47308 * 185.00261 * 4 2 1 6 6 O 1.21285 * 119.99904 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00116 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00107 * 180.02562 * 7 5 4 9 9 C 1.46500 * 119.99692 * 359.97438 * 7 5 4 10 10 N 1.46900 * 109.47592 * 239.99450 * 2 1 3 11 11 C 1.46909 * 110.99458 * 85.00297 * 10 2 1 12 12 C 1.50694 * 109.46791 * 180.02562 * 11 10 2 13 13 C 1.38643 * 119.75070 * 269.72397 * 12 11 10 14 14 C 1.37616 * 120.24675 * 179.72183 * 13 12 11 15 15 C 1.40709 * 119.74690 * 0.57272 * 14 13 12 16 16 C 1.41402 * 120.24502 * 179.68283 * 15 14 13 17 17 H 1.07998 * 119.99707 * 24.40538 * 16 15 14 18 18 C 1.39944 * 120.00026 * 204.41099 * 16 15 14 19 19 N 1.30821 * 119.99947 * 17.85336 * 18 16 15 20 20 Si 1.86801 * 119.99893 * 197.85208 * 18 16 15 21 21 H 1.48498 * 109.47267 * 60.00397 * 20 18 16 22 22 H 1.48502 * 109.46921 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47017 * 300.00066 * 20 18 16 24 24 C 1.40711 * 119.51343 * 359.70352 * 15 14 13 25 25 C 1.37616 * 119.74417 * 0.02562 * 24 15 14 26 26 H 1.08999 * 109.47324 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47690 * 300.00147 * 1 2 3 28 28 H 1.08999 * 109.46683 * 60.00261 * 1 2 3 29 29 H 1.09007 * 109.46797 * 305.00193 * 4 2 1 30 30 H 1.08995 * 109.46758 * 65.00205 * 4 2 1 31 31 H 1.08995 * 109.47172 * 89.99800 * 8 7 5 32 32 H 1.08997 * 109.47094 * 209.99739 * 8 7 5 33 33 H 1.09001 * 109.46763 * 329.99575 * 8 7 5 34 34 H 1.08998 * 109.47426 * 0.02562 * 9 7 5 35 35 H 1.08999 * 109.46878 * 120.00135 * 9 7 5 36 36 H 1.08993 * 109.47201 * 240.00259 * 9 7 5 37 37 H 1.00891 * 110.99997 * 321.05232 * 10 2 1 38 38 H 1.09001 * 109.46992 * 299.99925 * 11 10 2 39 39 H 1.08997 * 109.47077 * 60.00386 * 11 10 2 40 40 H 1.08004 * 119.86997 * 359.97438 * 13 12 11 41 41 H 1.08004 * 120.12454 * 180.27941 * 14 13 12 42 42 H 0.96998 * 120.00127 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.13322 * 179.97438 * 24 15 14 44 44 H 1.08001 * 119.87626 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3129 6 8 4.1450 -0.0211 0.4442 7 7 4.2148 -1.1804 2.3345 8 6 5.6748 -1.0766 2.3966 9 6 3.4862 -1.8981 3.3835 10 7 2.0197 -0.6926 -1.1993 11 6 2.0826 0.2226 -2.3468 12 6 2.5875 -0.5219 -3.5558 13 6 3.9483 -0.5666 -3.8175 14 6 4.4210 -1.2482 -4.9155 15 6 3.5167 -1.8912 -5.7807 16 6 3.9904 -2.5889 -6.9157 17 1 4.9997 -2.9729 -6.9311 18 6 3.1515 -2.7819 -8.0191 19 7 2.0805 -2.0445 -8.1633 20 14 3.5608 -4.0923 -9.2858 21 1 3.5989 -5.4227 -8.6272 22 1 2.5226 -4.0958 -10.3476 23 1 4.8859 -3.8005 -9.8893 24 6 2.1373 -1.8343 -5.5085 25 6 1.6874 -1.1516 -4.4016 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6052 -0.2616 2.1370 30 1 1.7516 -1.7714 1.2056 31 1 5.9520 -0.1795 2.9502 32 1 6.0804 -1.9541 2.9001 33 1 6.0782 -1.0188 1.3856 34 1 2.4180 -1.8692 3.1688 35 1 3.8222 -2.9346 3.4151 36 1 3.6764 -1.4250 4.3467 37 1 1.4496 -1.4979 -1.4099 38 1 1.0872 0.6162 -2.5525 39 1 2.7590 1.0461 -2.1181 40 1 4.6401 -0.0679 -3.1548 41 1 5.4819 -1.2856 -5.1150 42 1 1.4992 -2.1779 -8.9283 43 1 1.4342 -2.3239 -6.1662 44 1 0.6292 -1.1069 -4.1904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398988709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:52 Heat of formation + Delta-G solvation = -20.025495 kcal Electronic energy + Delta-G solvation = -22743.788732 eV Core-core repulsion = 19467.483063 eV Total energy + Delta-G solvation = -3276.305669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.78908 -37.76223 -36.49237 -35.31898 -33.77672 -31.82667 -29.61771 -29.13970 -28.61409 -27.42541 -25.96692 -25.44070 -22.98982 -21.05402 -20.78025 -19.77951 -19.03759 -17.18480 -16.89670 -16.14447 -16.01355 -15.31505 -14.96681 -14.76002 -14.17783 -13.84899 -13.47503 -13.29466 -13.13045 -13.01704 -12.75389 -12.66538 -12.43927 -12.32933 -12.14725 -11.83010 -11.82249 -11.61158 -11.55455 -11.28200 -10.94420 -10.88687 -10.74980 -10.43131 -10.24324 -9.56128 -9.43623 -9.28078 -9.03546 -8.68686 -7.82880 -7.32732 -7.17209 -6.68107 -4.25685 2.83800 2.87161 3.02970 3.10086 3.13369 3.20232 3.27950 3.98874 4.49514 4.58012 4.79697 4.88413 4.92296 5.12217 5.17558 5.33514 5.37546 5.42218 5.44045 5.52087 5.54363 5.77323 5.80621 5.85097 5.90710 6.09557 6.15490 6.19994 6.43811 6.44821 6.56165 6.61500 7.05286 7.16487 7.37508 7.40229 7.49877 7.58779 7.73429 7.92670 8.03198 8.15648 8.28700 8.39800 8.41873 8.73969 8.99361 9.08853 10.26598 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.003204 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.186427 B = 8736.436044 C = 9399.226149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.095 3.905 3 H 0.080 0.920 4 C -0.126 4.126 5 C 0.515 3.485 6 O -0.505 6.505 7 N -0.635 5.635 8 C 0.088 3.912 9 C 0.079 3.921 10 N -0.667 5.667 11 C 0.131 3.869 12 C -0.208 4.208 13 C -0.065 4.065 14 C -0.229 4.229 15 C 0.112 3.888 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.077 3.923 19 N -0.796 5.796 20 Si 0.907 3.093 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.167 4.167 25 C -0.097 4.097 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.334 0.666 38 H 0.015 0.985 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.279 0.721 43 H 0.116 0.884 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 0.390 19.899 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.017 4.017 3 H 0.099 0.901 4 C -0.167 4.167 5 C 0.303 3.697 6 O -0.378 6.378 7 N -0.372 5.372 8 C -0.055 4.055 9 C -0.065 4.065 10 N -0.297 5.297 11 C 0.004 3.996 12 C -0.210 4.210 13 C -0.084 4.084 14 C -0.248 4.248 15 C 0.110 3.890 16 C -0.495 4.495 17 H 0.094 0.906 18 C -0.141 4.141 19 N -0.422 5.422 20 Si 0.731 3.269 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.187 4.187 25 C -0.116 4.116 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.033 0.967 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.133 0.867 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.796 0.867 19.398 19.500 hybrid contribution -0.841 -0.616 -0.691 1.251 sum -2.637 0.252 18.707 18.893 Atomic orbital electron populations 1.22531 0.97419 1.02067 1.02129 1.21302 0.91495 0.98446 0.90425 0.90139 1.21749 0.92417 1.03076 0.99466 1.20628 0.90161 0.78553 0.80402 1.90746 1.69777 1.40607 1.36657 1.47821 1.07355 1.56622 1.25414 1.21533 0.79871 1.00722 1.03385 1.21771 0.97581 0.96480 0.90630 1.60619 1.56212 1.09508 1.03366 1.20503 0.97212 0.93838 0.88087 1.18932 0.93589 1.09930 0.98551 1.20382 0.94060 0.98077 0.95872 1.20982 0.97849 1.06150 0.99857 1.17603 0.91635 0.88591 0.91214 1.19555 0.99544 1.31595 0.98828 0.90625 1.25888 0.94161 0.95178 0.98837 1.69830 1.12143 1.32428 1.27777 0.86402 0.79077 0.81849 0.79559 1.18892 1.20428 1.19064 1.21251 0.96331 1.03726 0.97361 1.20517 0.96296 0.98986 0.95779 0.92451 0.92506 0.92220 0.89493 0.89105 0.93322 0.91773 0.90378 0.90317 0.92348 0.92515 0.84816 0.96703 0.91895 0.89302 0.89253 0.90990 0.86651 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 9.16 37.15 0.34 -1.58 16 2 C 0.09 1.23 2.15 -67.71 -0.15 1.09 16 3 H 0.08 1.17 7.61 -51.93 -0.40 0.78 16 4 C -0.13 -1.36 3.69 -27.88 -0.10 -1.46 16 5 C 0.51 7.16 7.54 -10.99 -0.08 7.07 16 6 O -0.51 -9.40 14.93 5.55 0.08 -9.32 16 7 N -0.64 -6.97 3.27 -189.52 -0.62 -7.59 16 8 C 0.09 0.89 10.48 59.85 0.63 1.52 16 9 C 0.08 0.53 10.60 59.85 0.63 1.16 16 10 N -0.67 -11.17 5.38 -107.99 -0.58 -11.75 16 11 C 0.13 2.51 5.60 -4.97 -0.03 2.48 16 12 C -0.21 -4.80 5.41 -104.33 -0.56 -5.36 16 13 C -0.07 -1.60 9.67 -39.66 -0.38 -1.98 16 14 C -0.23 -6.02 9.80 -38.88 -0.38 -6.40 16 15 C 0.11 3.12 5.58 -106.83 -0.60 2.53 16 16 C -0.47 -12.86 9.05 -37.74 -0.34 -13.20 16 17 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 18 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 19 N -0.80 -21.21 10.95 55.55 0.61 -20.60 16 20 Si 0.91 19.23 29.60 -169.99 -5.03 14.20 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 C -0.17 -4.50 8.70 -38.88 -0.34 -4.83 16 25 C -0.10 -2.33 9.67 -39.66 -0.38 -2.71 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 29 H 0.09 0.68 7.79 -51.92 -0.40 0.28 16 30 H 0.09 0.88 7.79 -51.93 -0.40 0.48 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.08 0.99 7.42 -51.93 -0.39 0.60 16 34 H 0.08 0.43 5.77 -51.93 -0.30 0.13 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.33 5.48 8.46 -39.30 -0.33 5.15 16 38 H 0.01 0.27 7.37 -51.93 -0.38 -0.11 16 39 H 0.06 1.25 7.99 -51.93 -0.42 0.84 16 40 H 0.09 2.09 8.06 -52.48 -0.42 1.66 16 41 H 0.09 2.24 8.06 -52.48 -0.42 1.82 16 42 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 43 H 0.12 3.19 6.16 -52.48 -0.32 2.86 16 44 H 0.08 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -31.78 360.64 -9.02 -40.80 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.08 Total: 8.60 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -1.83 Total: -19.79 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.59 Total: -39.94 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.78 -9.02 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398988709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.778 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds