Wall clock time and date at job start Tue Mar 31 2020 08:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47324 * 2 1 4 4 C 1.53006 * 109.47074 * 119.99732 * 2 1 3 5 5 C 1.50695 * 109.47308 * 185.00261 * 4 2 1 6 6 O 1.21285 * 119.99904 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00116 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00107 * 180.02562 * 7 5 4 9 9 C 1.46500 * 119.99692 * 359.97438 * 7 5 4 10 10 N 1.46900 * 109.47592 * 239.99450 * 2 1 3 11 11 C 1.46909 * 110.99458 * 85.00297 * 10 2 1 12 12 C 1.50694 * 109.46791 * 180.02562 * 11 10 2 13 13 C 1.38643 * 119.75070 * 269.72397 * 12 11 10 14 14 C 1.37616 * 120.24675 * 179.72183 * 13 12 11 15 15 C 1.40709 * 119.74690 * 0.57272 * 14 13 12 16 16 C 1.41402 * 120.24502 * 179.68283 * 15 14 13 17 17 H 1.07998 * 119.99707 * 24.40538 * 16 15 14 18 18 C 1.39944 * 120.00026 * 204.41099 * 16 15 14 19 19 N 1.30821 * 119.99947 * 17.85336 * 18 16 15 20 20 Si 1.86801 * 119.99893 * 197.85208 * 18 16 15 21 21 H 1.48498 * 109.47267 * 60.00397 * 20 18 16 22 22 H 1.48502 * 109.46921 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47017 * 300.00066 * 20 18 16 24 24 C 1.40711 * 119.51343 * 359.70352 * 15 14 13 25 25 C 1.37616 * 119.74417 * 0.02562 * 24 15 14 26 26 H 1.08999 * 109.47324 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47690 * 300.00147 * 1 2 3 28 28 H 1.08999 * 109.46683 * 60.00261 * 1 2 3 29 29 H 1.09007 * 109.46797 * 305.00193 * 4 2 1 30 30 H 1.08995 * 109.46758 * 65.00205 * 4 2 1 31 31 H 1.08995 * 109.47172 * 89.99800 * 8 7 5 32 32 H 1.08997 * 109.47094 * 209.99739 * 8 7 5 33 33 H 1.09001 * 109.46763 * 329.99575 * 8 7 5 34 34 H 1.08998 * 109.47426 * 0.02562 * 9 7 5 35 35 H 1.08999 * 109.46878 * 120.00135 * 9 7 5 36 36 H 1.08993 * 109.47201 * 240.00259 * 9 7 5 37 37 H 1.00891 * 110.99997 * 321.05232 * 10 2 1 38 38 H 1.09001 * 109.46992 * 299.99925 * 11 10 2 39 39 H 1.08997 * 109.47077 * 60.00386 * 11 10 2 40 40 H 1.08004 * 119.86997 * 359.97438 * 13 12 11 41 41 H 1.08004 * 120.12454 * 180.27941 * 14 13 12 42 42 H 0.96998 * 120.00127 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.13322 * 179.97438 * 24 15 14 44 44 H 1.08001 * 119.87626 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3129 6 8 4.1450 -0.0211 0.4442 7 7 4.2148 -1.1804 2.3345 8 6 5.6748 -1.0766 2.3966 9 6 3.4862 -1.8981 3.3835 10 7 2.0197 -0.6926 -1.1993 11 6 2.0826 0.2226 -2.3468 12 6 2.5875 -0.5219 -3.5558 13 6 3.9483 -0.5666 -3.8175 14 6 4.4210 -1.2482 -4.9155 15 6 3.5167 -1.8912 -5.7807 16 6 3.9904 -2.5889 -6.9157 17 1 4.9997 -2.9729 -6.9311 18 6 3.1515 -2.7819 -8.0191 19 7 2.0805 -2.0445 -8.1633 20 14 3.5608 -4.0923 -9.2858 21 1 3.5989 -5.4227 -8.6272 22 1 2.5226 -4.0958 -10.3476 23 1 4.8859 -3.8005 -9.8893 24 6 2.1373 -1.8343 -5.5085 25 6 1.6874 -1.1516 -4.4016 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6052 -0.2616 2.1370 30 1 1.7516 -1.7714 1.2056 31 1 5.9520 -0.1795 2.9502 32 1 6.0804 -1.9541 2.9001 33 1 6.0782 -1.0188 1.3856 34 1 2.4180 -1.8692 3.1688 35 1 3.8222 -2.9346 3.4151 36 1 3.6764 -1.4250 4.3467 37 1 1.4496 -1.4979 -1.4099 38 1 1.0872 0.6162 -2.5525 39 1 2.7590 1.0461 -2.1181 40 1 4.6401 -0.0679 -3.1548 41 1 5.4819 -1.2856 -5.1150 42 1 1.4992 -2.1779 -8.9283 43 1 1.4342 -2.3239 -6.1662 44 1 0.6292 -1.1069 -4.1904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398988709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:49 Heat of formation + Delta-G solvation = -39.836368 kcal Electronic energy + Delta-G solvation = -22744.647796 eV Core-core repulsion = 19467.483063 eV Total energy + Delta-G solvation = -3277.164733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.78854 -39.58714 -37.79418 -36.30712 -35.64268 -33.33858 -31.25672 -30.98706 -29.71649 -28.14444 -27.66240 -26.32957 -24.71592 -22.88500 -21.97797 -21.65187 -20.00092 -19.20909 -17.81243 -17.32941 -17.01765 -16.94263 -16.21699 -16.01297 -15.78944 -15.60085 -14.98778 -14.51664 -14.35147 -14.19669 -14.01946 -13.79929 -13.57893 -13.37564 -13.31028 -13.24057 -12.97857 -12.89200 -12.87328 -12.70087 -12.60737 -12.40542 -12.33882 -11.98273 -11.72687 -11.33329 -11.25752 -10.99062 -10.62622 -9.54603 -9.38026 -9.23140 -9.02635 -8.63144 -6.32697 0.96158 1.16025 1.37247 1.48793 1.53758 1.87668 2.21287 2.23317 2.70344 3.43632 3.74126 3.84354 3.96496 4.23837 4.31626 4.36434 4.43262 4.44327 4.54065 4.55566 4.64260 4.65337 4.68860 4.73949 4.82991 4.86375 4.94307 4.96764 5.02569 5.04959 5.12819 5.17574 5.32465 5.39294 5.49185 5.65121 5.71981 5.97645 6.10309 6.24362 6.33197 6.40995 6.53260 6.69300 6.71351 6.94982 7.04982 7.43032 8.34144 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.003204 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.186427 B = 8736.436044 C = 9399.226149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.094 3.906 3 H 0.061 0.939 4 C -0.118 4.118 5 C 0.502 3.498 6 O -0.568 6.568 7 N -0.635 5.635 8 C 0.085 3.915 9 C 0.072 3.928 10 N -0.679 5.679 11 C 0.143 3.857 12 C -0.197 4.197 13 C -0.073 4.073 14 C -0.247 4.247 15 C 0.081 3.919 16 C -0.506 4.506 17 H 0.071 0.929 18 C 0.036 3.964 19 N -0.826 5.826 20 Si 0.984 3.016 21 H -0.260 1.260 22 H -0.264 1.264 23 H -0.261 1.261 24 C -0.187 4.187 25 C -0.094 4.094 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.336 0.664 38 H 0.030 0.970 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.288 0.712 43 H 0.103 0.897 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 -0.511 21.939 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 H 0.079 0.921 4 C -0.158 4.158 5 C 0.291 3.709 6 O -0.446 6.446 7 N -0.371 5.371 8 C -0.058 4.058 9 C -0.070 4.070 10 N -0.310 5.310 11 C 0.015 3.985 12 C -0.198 4.198 13 C -0.092 4.092 14 C -0.267 4.267 15 C 0.079 3.921 16 C -0.535 4.535 17 H 0.089 0.911 18 C -0.179 4.179 19 N -0.452 5.452 20 Si 0.804 3.196 21 H -0.185 1.185 22 H -0.189 1.189 23 H -0.185 1.185 24 C -0.207 4.207 25 C -0.113 4.113 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.144 0.856 30 H 0.126 0.874 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.154 0.846 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.121 0.879 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.464 -0.047 21.508 21.786 hybrid contribution -0.317 -0.262 -1.132 1.205 sum -3.782 -0.309 20.376 20.726 Atomic orbital electron populations 1.22423 0.94935 1.03019 1.02815 1.21365 0.93343 0.97341 0.89634 0.92092 1.21766 0.90215 1.04164 0.99677 1.21290 0.91552 0.77857 0.80152 1.90723 1.71109 1.43558 1.39162 1.48004 1.07737 1.55770 1.25544 1.21577 0.79960 1.02502 1.01778 1.22068 0.98147 0.96723 0.90075 1.60485 1.57460 1.09516 1.03529 1.20287 0.97397 0.93351 0.87484 1.19347 0.92825 1.08307 0.99344 1.20558 0.95195 0.97961 0.95503 1.21128 0.97908 1.06992 1.00677 1.17933 0.92509 0.89587 0.92075 1.19798 1.00179 1.33468 1.00077 0.91051 1.26759 0.93687 0.96902 1.00514 1.69872 1.12980 1.33477 1.28847 0.85241 0.79221 0.78372 0.76764 1.18469 1.18863 1.18520 1.21257 0.95837 1.05117 0.98480 1.20760 0.97878 0.97933 0.94736 0.91310 0.89874 0.93516 0.85626 0.87374 0.92501 0.88980 0.93737 0.88633 0.91292 0.90509 0.84563 0.95187 0.93077 0.88732 0.89300 0.90089 0.87897 0.87304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.16 71.98 0.66 -2.42 16 2 C 0.09 2.26 2.15 44.92 0.10 2.35 16 3 H 0.06 1.72 7.61 -2.39 -0.02 1.70 16 4 C -0.12 -2.19 3.69 29.85 0.11 -2.08 16 5 C 0.50 13.43 7.54 87.65 0.66 14.09 16 6 O -0.57 -21.63 14.93 -3.05 -0.05 -21.67 16 7 N -0.64 -12.81 3.27 -871.91 -2.85 -15.66 16 8 C 0.08 1.67 10.48 127.77 1.34 3.01 16 9 C 0.07 0.71 10.60 127.77 1.35 2.06 16 10 N -0.68 -22.06 5.38 -495.57 -2.67 -24.73 16 11 C 0.14 5.40 5.60 85.55 0.48 5.88 16 12 C -0.20 -9.11 5.41 -19.67 -0.11 -9.21 16 13 C -0.07 -3.71 9.67 22.22 0.21 -3.49 16 14 C -0.25 -13.59 9.80 22.73 0.22 -13.36 16 15 C 0.08 4.71 5.58 -21.29 -0.12 4.59 16 16 C -0.51 -29.01 9.05 23.46 0.21 -28.80 16 17 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 18 C 0.04 1.90 5.14 85.26 0.44 2.34 16 19 N -0.83 -44.75 10.95 21.83 0.24 -44.51 16 20 Si 0.98 39.68 29.60 68.60 2.03 41.71 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 24 C -0.19 -10.35 8.70 22.73 0.20 -10.15 16 25 C -0.09 -4.54 9.67 22.22 0.21 -4.33 16 26 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 0.96 7.45 -2.39 -0.02 0.94 16 29 H 0.13 1.38 7.79 -2.38 -0.02 1.36 16 30 H 0.11 1.68 7.79 -2.39 -0.02 1.66 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.25 8.07 -2.39 -0.02 1.23 16 33 H 0.04 1.18 7.42 -2.39 -0.02 1.16 16 34 H 0.10 0.62 5.77 -2.39 -0.01 0.61 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.34 10.49 8.46 -89.70 -0.76 9.73 16 38 H 0.03 1.04 7.37 -2.39 -0.02 1.02 16 39 H 0.05 2.05 7.99 -2.39 -0.02 2.03 16 40 H 0.09 4.60 8.06 -2.91 -0.02 4.57 16 41 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.29 14.06 8.30 -92.71 -0.77 13.30 16 43 H 0.10 5.86 6.16 -2.91 -0.02 5.84 16 44 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -73.11 360.64 2.90 -70.21 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: 0.22 Total: 34.18 kcal Atomic # 6 Polarization: -45.50 SS G_CDS: 5.97 Total: -39.52 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -5.28 Total: -84.90 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.05 Total: -21.67 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -73.11 2.90 -70.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398988709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.370 kcal (2) G-P(sol) polarization free energy of solvation -73.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds