Wall clock time and date at job start Tue Mar 31 2020 08:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46853 * 2 1 4 4 C 1.52997 * 109.47464 * 239.99803 * 2 1 3 5 5 C 1.50699 * 109.46867 * 63.32302 * 4 2 1 6 6 H 1.08000 * 120.00606 * 356.61530 * 5 4 2 7 7 C 1.37882 * 119.99479 * 176.61686 * 5 4 2 8 8 N 1.31509 * 120.00402 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99490 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46659 * 90.00168 * 9 7 5 11 11 H 1.48503 * 109.46928 * 209.99654 * 9 7 5 12 12 H 1.48497 * 109.47364 * 330.00127 * 9 7 5 13 13 N 1.46906 * 109.47081 * 119.99275 * 2 1 3 14 14 C 1.46901 * 111.00093 * 175.32872 * 13 2 1 15 15 C 1.46897 * 111.00107 * 299.29236 * 13 2 1 16 16 C 1.50706 * 109.46916 * 169.99833 * 15 13 2 17 17 O 1.21280 * 119.99842 * 359.71855 * 16 15 13 18 18 N 1.34768 * 119.99847 * 179.97438 * 16 15 13 19 19 C 1.46501 * 119.99888 * 179.97438 * 18 16 15 20 20 C 1.50708 * 109.47115 * 180.02562 * 19 18 16 21 21 C 1.38243 * 119.99534 * 269.72537 * 20 19 18 22 22 C 1.38227 * 119.99527 * 179.76589 * 21 20 19 23 23 C 1.38234 * 120.00391 * 0.50752 * 22 21 20 24 24 C 1.38243 * 119.99803 * 359.74722 * 23 22 21 25 25 C 1.38231 * 120.00192 * 90.00119 * 20 19 18 26 26 H 1.08995 * 109.47167 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47356 * 300.00275 * 1 2 3 28 28 H 1.09004 * 109.46967 * 60.00110 * 1 2 3 29 29 H 1.09003 * 109.46987 * 183.32181 * 4 2 1 30 30 H 1.09005 * 109.46734 * 303.32145 * 4 2 1 31 31 H 0.97003 * 120.00115 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47137 * 176.44455 * 14 13 2 33 33 H 1.08996 * 109.47419 * 296.45164 * 14 13 2 34 34 H 1.09001 * 109.46573 * 56.44762 * 14 13 2 35 35 H 1.08997 * 109.47184 * 49.99451 * 15 13 2 36 36 H 1.09000 * 109.47149 * 289.99315 * 15 13 2 37 37 H 0.97001 * 120.00620 * 359.97438 * 18 16 15 38 38 H 1.08993 * 109.47418 * 299.99514 * 19 18 16 39 39 H 1.08997 * 109.47368 * 60.00019 * 19 18 16 40 40 H 1.07996 * 119.99605 * 359.97438 * 21 20 19 41 41 H 1.08003 * 120.00402 * 180.22900 * 22 21 20 42 42 H 1.08003 * 120.00651 * 179.72247 * 23 22 21 43 43 H 1.07993 * 119.99758 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.99792 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6061 0.0351 -2.4782 6 1 0.9789 0.9089 -2.3813 7 6 2.0098 -0.3886 -3.7267 8 7 2.7731 -1.4530 -3.8449 9 14 1.4713 0.5485 -5.2503 10 1 2.4682 1.6049 -5.5597 11 1 1.3707 -0.3885 -6.3980 12 1 0.1472 1.1742 -5.0045 13 7 2.0196 -0.6924 1.1996 14 6 3.4838 -0.8095 1.1790 15 6 1.5625 -0.0164 2.4210 16 6 1.8700 -0.8793 3.6177 17 8 2.4116 -1.9540 3.4673 18 7 1.5386 -0.4590 4.8546 19 6 1.8370 -1.2981 6.0178 20 6 1.3682 -0.6045 7.2710 21 6 2.2238 0.2379 7.9561 22 6 1.7922 0.8777 9.1028 23 6 0.5085 0.6671 9.5704 24 6 -0.3453 -0.1794 8.8882 25 6 0.0845 -0.8152 7.7386 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1284 -0.7731 -1.2198 30 1 1.6289 -1.7303 -1.2794 31 1 3.0575 -1.7508 -4.7232 32 1 3.8246 -1.2690 2.1068 33 1 3.7871 -1.4280 0.3344 34 1 3.9262 0.1819 1.0807 35 1 0.4874 0.1530 2.3619 36 1 2.0761 0.9398 2.5211 37 1 1.1024 0.3991 4.9746 38 1 1.3228 -2.2538 5.9180 39 1 2.9120 -1.4683 6.0768 40 1 3.2283 0.3986 7.5934 41 1 2.4594 1.5388 9.6360 42 1 0.1728 1.1636 10.4689 43 1 -1.3481 -0.3443 9.2538 44 1 -0.5825 -1.4765 7.2056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411393288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:51 Heat of formation + Delta-G solvation = -7.889485 kcal Electronic energy + Delta-G solvation = -22291.533593 eV Core-core repulsion = 19015.754180 eV Total energy + Delta-G solvation = -3275.779412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.06363 -39.26083 -37.14701 -34.96469 -33.08296 -31.76605 -31.28389 -30.87338 -28.62279 -27.01778 -25.67474 -24.00943 -22.95577 -22.82286 -21.58083 -20.35510 -18.96995 -17.49690 -16.79488 -16.55364 -15.95596 -15.86051 -15.28050 -15.18770 -14.54151 -14.26291 -14.17857 -13.89902 -13.79455 -13.27983 -13.22364 -12.90057 -12.66531 -12.49460 -12.08280 -11.66616 -11.52101 -11.44166 -11.40027 -11.27913 -10.85698 -10.74730 -10.71424 -10.31057 -9.92265 -9.67177 -9.31699 -9.25630 -9.11162 -9.04705 -9.00858 -8.29965 -7.64366 -5.95908 -3.97758 0.86414 1.01369 2.81390 3.06913 3.33576 3.40058 3.42628 3.56201 4.32192 4.44192 4.48505 4.62751 4.64300 4.74665 4.97449 5.02041 5.10682 5.34639 5.39431 5.45303 5.47402 5.52520 5.64586 5.67171 5.90861 5.96709 6.05283 6.12378 6.18364 6.22660 6.25619 6.31438 6.38294 6.59329 6.67752 6.74229 6.92715 7.11848 7.41172 7.60048 7.65702 7.82957 7.92161 8.12331 8.37666 8.47450 9.08560 9.65033 11.15488 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.040608 B = 0.002437 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.350523 B =11485.883818 C =11755.399457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.085 3.915 3 H 0.028 0.972 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.521 5.521 14 C 0.024 3.976 15 C 0.032 3.968 16 C 0.514 3.486 17 O -0.516 6.516 18 N -0.736 5.736 19 C 0.162 3.838 20 C -0.105 4.105 21 C -0.101 4.101 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.101 4.101 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.013 0.987 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.399 0.601 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 5.524 26.705 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.022 4.022 3 H 0.046 0.954 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.246 5.246 14 C -0.124 4.124 15 C -0.100 4.100 16 C 0.300 3.700 17 O -0.390 6.390 18 N -0.391 5.391 19 C 0.039 3.961 20 C -0.106 4.106 21 C -0.120 4.120 22 C -0.141 4.141 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.119 4.119 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.032 0.968 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.233 0.767 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.945 4.115 26.422 27.030 hybrid contribution -0.138 1.765 -0.729 1.914 sum -4.083 5.880 25.694 26.673 Atomic orbital electron populations 1.21809 0.95446 1.01768 0.99978 1.21911 0.94925 0.95265 0.90050 0.95404 1.19193 0.96661 0.95917 0.88911 1.21198 1.31166 1.12101 0.91101 0.92622 1.25001 0.95266 0.95120 0.99031 1.69974 1.35624 1.23983 1.23597 0.86621 0.78969 0.79641 0.82897 1.20799 1.21270 1.19922 1.61834 1.11493 1.51040 1.00191 1.22491 0.86856 0.99493 1.03554 1.22031 1.02900 0.94897 0.90164 1.20884 0.78009 0.87350 0.83726 1.90685 1.40729 1.22230 1.85321 1.46105 1.64007 1.23207 1.05743 1.20123 1.00982 0.93483 0.81523 1.19953 0.94629 0.98949 0.97046 1.21146 0.99670 0.95996 0.95178 1.21181 0.96295 0.99949 0.96657 1.21230 0.94081 0.98248 0.99806 1.21190 0.99895 0.97320 0.95641 1.21157 0.95288 0.99255 0.96226 0.92491 0.95133 0.91320 0.95871 0.95823 0.93032 0.91134 0.90126 0.96848 0.87778 0.92763 0.76726 0.90680 0.90800 0.85792 0.85901 0.86029 0.85869 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.80 37.15 0.33 -2.19 16 2 C 0.09 1.80 2.12 -67.71 -0.14 1.66 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.03 0.80 4.19 -27.89 -0.12 0.68 16 5 C -0.52 -14.47 8.46 -34.44 -0.29 -14.76 16 6 H 0.06 1.50 6.82 -52.49 -0.36 1.14 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.52 -10.10 4.37 -236.33 -1.03 -11.13 16 14 C 0.02 0.46 8.63 60.07 0.52 0.98 16 15 C 0.03 0.47 5.27 -4.97 -0.03 0.44 16 16 C 0.51 7.53 7.48 -10.99 -0.08 7.44 16 17 O -0.52 -9.66 14.38 5.56 0.08 -9.58 16 18 N -0.74 -7.77 5.55 -61.47 -0.34 -8.11 16 19 C 0.16 1.59 5.80 -5.19 -0.03 1.56 16 20 C -0.11 -0.87 5.25 -104.62 -0.55 -1.41 16 21 C -0.10 -0.77 9.70 -39.58 -0.38 -1.15 16 22 C -0.12 -0.83 10.05 -39.59 -0.40 -1.23 16 23 C -0.12 -0.75 10.05 -39.58 -0.40 -1.14 16 24 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 25 C -0.10 -0.77 9.70 -39.59 -0.38 -1.15 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.03 0.47 6.21 -51.93 -0.32 0.14 16 28 H 0.07 1.36 6.77 -51.93 -0.35 1.01 16 29 H 0.02 0.65 6.23 -51.93 -0.32 0.32 16 30 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.07 1.32 5.80 -51.93 -0.30 1.02 16 33 H 0.08 1.73 6.37 -51.93 -0.33 1.40 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 1.39 5.85 -51.93 -0.30 1.09 16 36 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.40 3.28 8.46 -40.82 -0.35 2.94 16 38 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.07 0.76 8.08 -51.93 -0.42 0.35 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 42 H 0.12 0.55 8.06 -52.48 -0.42 0.12 16 43 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -33.13 357.40 -9.48 -42.61 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.84 Total: 0.44 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.45 Total: -9.95 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.64 Total: -45.56 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.13 -9.48 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411393288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.722 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds