Wall clock time and date at job start Tue Mar 31 2020 08:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46853 * 2 1 4 4 C 1.52997 * 109.47464 * 239.99803 * 2 1 3 5 5 C 1.50699 * 109.46867 * 63.32302 * 4 2 1 6 6 H 1.08000 * 120.00606 * 356.61530 * 5 4 2 7 7 C 1.37882 * 119.99479 * 176.61686 * 5 4 2 8 8 N 1.31509 * 120.00402 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99490 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46659 * 90.00168 * 9 7 5 11 11 H 1.48503 * 109.46928 * 209.99654 * 9 7 5 12 12 H 1.48497 * 109.47364 * 330.00127 * 9 7 5 13 13 N 1.46906 * 109.47081 * 119.99275 * 2 1 3 14 14 C 1.46901 * 111.00093 * 175.32872 * 13 2 1 15 15 C 1.46897 * 111.00107 * 299.29236 * 13 2 1 16 16 C 1.50706 * 109.46916 * 169.99833 * 15 13 2 17 17 O 1.21280 * 119.99842 * 359.71855 * 16 15 13 18 18 N 1.34768 * 119.99847 * 179.97438 * 16 15 13 19 19 C 1.46501 * 119.99888 * 179.97438 * 18 16 15 20 20 C 1.50708 * 109.47115 * 180.02562 * 19 18 16 21 21 C 1.38243 * 119.99534 * 269.72537 * 20 19 18 22 22 C 1.38227 * 119.99527 * 179.76589 * 21 20 19 23 23 C 1.38234 * 120.00391 * 0.50752 * 22 21 20 24 24 C 1.38243 * 119.99803 * 359.74722 * 23 22 21 25 25 C 1.38231 * 120.00192 * 90.00119 * 20 19 18 26 26 H 1.08995 * 109.47167 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47356 * 300.00275 * 1 2 3 28 28 H 1.09004 * 109.46967 * 60.00110 * 1 2 3 29 29 H 1.09003 * 109.46987 * 183.32181 * 4 2 1 30 30 H 1.09005 * 109.46734 * 303.32145 * 4 2 1 31 31 H 0.97003 * 120.00115 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47137 * 176.44455 * 14 13 2 33 33 H 1.08996 * 109.47419 * 296.45164 * 14 13 2 34 34 H 1.09001 * 109.46573 * 56.44762 * 14 13 2 35 35 H 1.08997 * 109.47184 * 49.99451 * 15 13 2 36 36 H 1.09000 * 109.47149 * 289.99315 * 15 13 2 37 37 H 0.97001 * 120.00620 * 359.97438 * 18 16 15 38 38 H 1.08993 * 109.47418 * 299.99514 * 19 18 16 39 39 H 1.08997 * 109.47368 * 60.00019 * 19 18 16 40 40 H 1.07996 * 119.99605 * 359.97438 * 21 20 19 41 41 H 1.08003 * 120.00402 * 180.22900 * 22 21 20 42 42 H 1.08003 * 120.00651 * 179.72247 * 23 22 21 43 43 H 1.07993 * 119.99758 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.99792 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6061 0.0351 -2.4782 6 1 0.9789 0.9089 -2.3813 7 6 2.0098 -0.3886 -3.7267 8 7 2.7731 -1.4530 -3.8449 9 14 1.4713 0.5485 -5.2503 10 1 2.4682 1.6049 -5.5597 11 1 1.3707 -0.3885 -6.3980 12 1 0.1472 1.1742 -5.0045 13 7 2.0196 -0.6924 1.1996 14 6 3.4838 -0.8095 1.1790 15 6 1.5625 -0.0164 2.4210 16 6 1.8700 -0.8793 3.6177 17 8 2.4116 -1.9540 3.4673 18 7 1.5386 -0.4590 4.8546 19 6 1.8370 -1.2981 6.0178 20 6 1.3682 -0.6045 7.2710 21 6 2.2238 0.2379 7.9561 22 6 1.7922 0.8777 9.1028 23 6 0.5085 0.6671 9.5704 24 6 -0.3453 -0.1794 8.8882 25 6 0.0845 -0.8152 7.7386 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1284 -0.7731 -1.2198 30 1 1.6289 -1.7303 -1.2794 31 1 3.0575 -1.7508 -4.7232 32 1 3.8246 -1.2690 2.1068 33 1 3.7871 -1.4280 0.3344 34 1 3.9262 0.1819 1.0807 35 1 0.4874 0.1530 2.3619 36 1 2.0761 0.9398 2.5211 37 1 1.1024 0.3991 4.9746 38 1 1.3228 -2.2538 5.9180 39 1 2.9120 -1.4683 6.0768 40 1 3.2283 0.3986 7.5934 41 1 2.4594 1.5388 9.6360 42 1 0.1728 1.1636 10.4689 43 1 -1.3481 -0.3443 9.2538 44 1 -0.5825 -1.4765 7.2056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411393288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:51 Heat of formation + Delta-G solvation = -29.839306 kcal Electronic energy + Delta-G solvation = -22292.485408 eV Core-core repulsion = 19015.754180 eV Total energy + Delta-G solvation = -3276.731228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06578 -40.05213 -38.64706 -35.94722 -35.11175 -32.85135 -32.35164 -31.79384 -30.00104 -28.66078 -26.77611 -25.65957 -24.57453 -23.47204 -22.22370 -21.51601 -20.64373 -18.67673 -18.36335 -17.60048 -16.98323 -16.86963 -16.50500 -16.23878 -15.90990 -15.62923 -15.59433 -15.20974 -14.67704 -14.29500 -14.11690 -13.97768 -13.84970 -13.74735 -13.44898 -13.41875 -13.09101 -12.99270 -12.67072 -12.54109 -12.27206 -12.11058 -11.99382 -11.91025 -11.79783 -11.22228 -11.04761 -10.80411 -10.50833 -10.10804 -9.82767 -9.75179 -9.14186 -8.15753 -6.25924 0.30393 0.49430 1.41703 1.43405 1.54207 1.66613 2.14320 2.43395 2.91642 3.17170 3.19501 3.66708 3.91253 3.93302 4.15098 4.15749 4.30516 4.31372 4.35342 4.37071 4.41472 4.60105 4.64759 4.65946 4.71400 4.76811 4.78347 5.06507 5.08540 5.09917 5.16178 5.22707 5.42214 5.43633 5.53635 5.55078 5.62411 5.65614 5.70627 5.81600 6.08454 6.10738 6.19617 6.37936 6.60957 6.90945 7.30615 7.42356 8.96760 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.040608 B = 0.002437 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.350523 B =11485.883818 C =11755.399457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.096 3.904 3 H 0.033 0.967 4 C 0.037 3.963 5 C -0.529 4.529 6 H 0.068 0.932 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.259 1.259 13 N -0.540 5.540 14 C 0.035 3.965 15 C 0.032 3.968 16 C 0.516 3.484 17 O -0.565 6.565 18 N -0.714 5.714 19 C 0.166 3.834 20 C -0.114 4.114 21 C -0.110 4.110 22 C -0.128 4.128 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.110 4.110 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.059 0.941 29 H -0.006 1.006 30 H -0.016 1.016 31 H 0.261 0.739 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.023 0.977 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.414 0.586 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.128 0.872 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 8.101 28.405 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.012 4.012 3 H 0.051 0.949 4 C 0.000 4.000 5 C -0.567 4.567 6 H 0.086 0.914 7 C -0.202 4.202 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.265 5.265 14 C -0.114 4.114 15 C -0.098 4.098 16 C 0.303 3.697 17 O -0.443 6.443 18 N -0.368 5.368 19 C 0.043 3.957 20 C -0.114 4.114 21 C -0.129 4.129 22 C -0.146 4.146 23 C -0.135 4.135 24 C -0.146 4.146 25 C -0.129 4.129 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.012 0.988 30 H 0.002 0.998 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.250 0.750 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.146 0.854 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.623 6.740 28.174 29.509 hybrid contribution 0.382 0.950 -1.115 1.514 sum -5.241 7.691 27.058 28.614 Atomic orbital electron populations 1.21726 0.93431 1.01415 1.01705 1.21626 0.96396 0.94456 0.88672 0.94925 1.19028 0.94738 0.94454 0.91815 1.21614 1.30933 1.12352 0.91828 0.91372 1.26006 0.95258 0.96046 1.02845 1.70137 1.37117 1.25930 1.24454 0.85439 0.79191 0.78153 0.78194 1.19909 1.21250 1.18287 1.61673 1.11228 1.52237 1.01411 1.22310 0.87472 0.99348 1.02229 1.22130 1.04298 0.95405 0.88016 1.20855 0.77544 0.86581 0.84747 1.90677 1.43258 1.24241 1.86087 1.45911 1.62515 1.23621 1.04760 1.20089 1.00485 0.93243 0.81930 1.19794 0.95238 0.99772 0.96622 1.21279 0.99860 0.96076 0.95648 1.21450 0.96861 0.99920 0.96350 1.21562 0.93855 0.97794 1.00315 1.21454 1.00879 0.97000 0.95226 1.21284 0.95150 0.99598 0.96833 0.93880 0.90714 0.92222 0.98760 0.99769 0.93006 0.90607 0.93600 0.95837 0.85586 0.90173 0.74961 0.91636 0.91533 0.85377 0.84110 0.83895 0.84112 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.80 71.98 0.63 -3.91 16 2 C 0.10 4.02 2.12 44.91 0.10 4.12 16 3 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 4 C 0.04 2.02 4.19 29.85 0.13 2.15 16 5 C -0.53 -29.93 8.46 25.60 0.22 -29.72 16 6 H 0.07 3.61 6.82 -2.91 -0.02 3.59 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 8 N -0.94 -58.52 13.29 21.45 0.28 -58.23 16 9 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 13 N -0.54 -20.87 4.37 -901.62 -3.94 -24.81 16 14 C 0.03 1.37 8.63 127.69 1.10 2.48 16 15 C 0.03 0.88 5.27 85.56 0.45 1.33 16 16 C 0.52 14.53 7.48 87.66 0.66 15.18 16 17 O -0.56 -21.36 14.38 -3.03 -0.04 -21.40 16 18 N -0.71 -13.92 5.55 -466.79 -2.59 -16.51 16 19 C 0.17 3.14 5.80 85.64 0.50 3.64 16 20 C -0.11 -1.72 5.25 -19.86 -0.10 -1.83 16 21 C -0.11 -1.49 9.70 22.27 0.22 -1.27 16 22 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 23 C -0.12 -1.20 10.05 22.27 0.22 -0.97 16 24 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 25 C -0.11 -1.51 9.70 22.27 0.22 -1.29 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 2.03 6.21 -2.39 -0.01 2.02 16 28 H 0.06 2.26 6.77 -2.39 -0.02 2.24 16 29 H -0.01 -0.35 6.23 -2.39 -0.01 -0.37 16 30 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 31 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.08 2.92 5.80 -2.39 -0.01 2.91 16 33 H 0.05 2.10 6.37 -2.39 -0.02 2.09 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.13 2.89 5.85 -2.39 -0.01 2.88 16 36 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 37 H 0.41 5.71 8.46 -92.71 -0.78 4.93 16 38 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 39 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 40 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 41 H 0.14 1.00 8.06 -2.91 -0.02 0.97 16 42 H 0.14 0.80 8.06 -2.91 -0.02 0.78 16 43 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 44 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -74.17 357.40 1.18 -72.98 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.20 Total: 13.68 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 5.24 Total: -12.29 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -6.24 Total: -99.56 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.04 Total: -21.40 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.17 1.18 -72.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411393288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.145 kcal (2) G-P(sol) polarization free energy of solvation -74.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds