Wall clock time and date at job start Tue Mar 31 2020 08:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.53003 * 109.47203 * 120.00012 * 2 1 3 5 5 C 1.50699 * 109.46790 * 184.99897 * 4 2 1 6 6 H 1.07993 * 120.00246 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99598 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00353 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47249 * 90.00120 * 9 7 5 11 11 H 1.48497 * 109.46985 * 210.00011 * 9 7 5 12 12 H 1.48502 * 109.46912 * 329.99858 * 9 7 5 13 13 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 14 14 C 1.46893 * 111.00136 * 306.04405 * 13 2 1 15 15 C 1.46901 * 110.99853 * 70.00100 * 13 2 1 16 16 C 1.50701 * 109.46921 * 169.99766 * 15 13 2 17 17 O 1.21280 * 119.99781 * 0.02562 * 16 15 13 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 13 19 19 C 1.46497 * 119.99566 * 180.02562 * 18 16 15 20 20 C 1.50703 * 109.46835 * 180.02562 * 19 18 16 21 21 C 1.38231 * 120.00143 * 269.72598 * 20 19 18 22 22 C 1.38232 * 120.00354 * 179.76499 * 21 20 19 23 23 C 1.38237 * 119.99634 * 0.50993 * 22 21 20 24 24 C 1.38237 * 120.00240 * 359.74804 * 23 22 21 25 25 C 1.38236 * 119.99634 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 27 27 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 28 28 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46759 * 305.00169 * 4 2 1 30 30 H 1.08999 * 109.47139 * 64.99934 * 4 2 1 31 31 H 0.96995 * 120.00152 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47439 * 183.95618 * 14 13 2 33 33 H 1.08997 * 109.47257 * 303.95746 * 14 13 2 34 34 H 1.09006 * 109.46808 * 63.95302 * 14 13 2 35 35 H 1.09002 * 109.47401 * 49.99794 * 15 13 2 36 36 H 1.09001 * 109.46874 * 289.99807 * 15 13 2 37 37 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 38 38 H 1.09001 * 109.47487 * 300.00114 * 19 18 16 39 39 H 1.09002 * 109.47182 * 60.00342 * 19 18 16 40 40 H 1.08003 * 120.00132 * 0.02562 * 21 20 19 41 41 H 1.07995 * 120.00414 * 180.23089 * 22 21 20 42 42 H 1.08002 * 120.00281 * 179.72006 * 23 22 21 43 43 H 1.07996 * 120.00689 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00326 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5420 -0.6149 1.3126 6 1 4.0789 -0.0855 0.5396 7 6 4.2304 -1.1926 2.3582 8 7 3.5764 -1.8361 3.3005 9 14 6.0921 -1.0602 2.4373 10 1 6.4698 0.1626 3.1906 11 1 6.6445 -2.2552 3.1242 12 1 6.6417 -0.9827 1.0599 13 7 2.0197 -0.6925 -1.1995 14 6 1.4344 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4091 16 6 2.4775 -0.5163 -3.5795 17 8 3.1494 -1.5135 -3.4215 18 7 2.3778 0.0427 -4.8018 19 6 3.0817 -0.5541 -5.9396 20 6 2.8081 0.2562 -7.1805 21 6 1.7299 -0.0571 -7.9868 22 6 1.4761 0.6891 -9.1224 23 6 2.3068 1.7421 -9.4574 24 6 3.3882 2.0521 -8.6540 25 6 3.6386 1.3094 -7.5153 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7715 1.2056 31 1 4.0608 -2.2428 4.0359 32 1 1.8665 -2.5521 -2.1648 33 1 1.6467 -2.5987 -0.3992 34 1 0.3556 -1.9520 -1.4399 35 1 2.1025 1.1189 -2.2604 36 1 0.6814 0.1053 -2.6087 37 1 1.8401 0.8400 -4.9281 38 1 4.1533 -0.5622 -5.7403 39 1 2.7319 -1.5758 -6.0880 40 1 1.0832 -0.8822 -7.7273 41 1 0.6316 0.4467 -9.7503 42 1 2.1112 2.3223 -10.3471 43 1 4.0374 2.8744 -8.9159 44 1 4.4836 1.5512 -6.8878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411393295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:56 Heat of formation + Delta-G solvation = -4.951919 kcal Electronic energy + Delta-G solvation = -22581.515877 eV Core-core repulsion = 19305.863847 eV Total energy + Delta-G solvation = -3275.652030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.00114 -39.21385 -37.28271 -34.88844 -32.81355 -31.72429 -31.24860 -30.69885 -27.99592 -27.26257 -26.00583 -24.25138 -22.91933 -22.67638 -21.54509 -20.28746 -18.73612 -17.44040 -16.70179 -16.12863 -16.01042 -15.81189 -15.22972 -15.09269 -14.92188 -14.38723 -13.87207 -13.83626 -13.66786 -13.25253 -12.99579 -12.88227 -12.71882 -12.48498 -12.13175 -11.67462 -11.42157 -11.40136 -11.36768 -11.19404 -10.89729 -10.76193 -10.54810 -10.37869 -9.94214 -9.64186 -9.28176 -9.20858 -9.02955 -8.97681 -8.90419 -8.18347 -7.42375 -5.81501 -3.78524 0.90252 1.04738 2.91801 3.13175 3.45281 3.51324 3.58984 3.61207 4.37186 4.52315 4.63685 4.66005 4.69291 4.78119 5.04538 5.07129 5.14263 5.39343 5.50458 5.52099 5.55873 5.58597 5.69780 5.71158 5.77884 5.90228 5.99129 6.08601 6.13079 6.15529 6.20772 6.27113 6.41814 6.52730 6.62917 6.71291 6.84994 7.00999 7.48430 7.58006 7.74154 7.94239 8.05661 8.19619 8.49169 8.65089 9.27002 9.82947 11.30610 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.003037 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.856113 B = 9218.386997 C = 9931.088398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.030 3.970 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.496 5.496 14 C 0.022 3.978 15 C 0.036 3.964 16 C 0.512 3.488 17 O -0.511 6.511 18 N -0.737 5.737 19 C 0.162 3.838 20 C -0.104 4.104 21 C -0.102 4.102 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.101 4.101 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.019 0.981 30 H 0.021 0.979 31 H 0.257 0.743 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.010 0.990 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.398 0.602 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.692 7.671 -24.665 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 H 0.088 0.912 4 C -0.007 4.007 5 C -0.526 4.526 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.219 5.219 14 C -0.126 4.126 15 C -0.096 4.096 16 C 0.299 3.701 17 O -0.384 6.384 18 N -0.392 5.392 19 C 0.039 3.961 20 C -0.104 4.104 21 C -0.120 4.120 22 C -0.141 4.141 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.119 4.119 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.028 0.972 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.232 0.768 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.627 6.750 -24.310 25.850 hybrid contribution -0.118 0.564 -0.128 0.591 sum -5.746 7.314 -24.438 26.148 Atomic orbital electron populations 1.22545 0.99727 1.01531 1.00592 1.22008 0.90035 0.98329 0.91789 0.91236 1.19201 0.96439 0.95511 0.89530 1.21166 0.91777 1.32864 1.06782 0.92179 1.24993 0.98019 0.95880 0.96030 1.69962 1.35185 1.37138 1.12375 0.86632 0.86489 0.77105 0.78023 1.21090 1.21578 1.19824 1.61842 1.58645 1.01987 0.99440 1.22529 0.94801 0.91198 1.04071 1.21979 0.97666 0.99064 0.90878 1.20890 0.81545 0.84396 0.83304 1.90702 1.39143 1.24723 1.83813 1.46098 1.52997 1.32165 1.07930 1.20118 0.97926 0.95834 0.82258 1.19962 0.96360 0.97242 0.96878 1.21141 0.96741 0.99575 0.94580 1.21175 0.99755 0.95951 0.97249 1.21221 0.95156 0.97456 0.99598 1.21190 0.97870 0.99899 0.95091 1.21175 0.99210 0.94660 0.96886 0.92390 0.94358 0.92613 0.96237 0.96087 0.93392 0.90922 0.90152 0.97190 0.88471 0.92934 0.76848 0.90680 0.90840 0.85813 0.85935 0.86057 0.85879 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 8.44 37.16 0.31 -2.80 16 2 C 0.09 1.76 2.26 -67.70 -0.15 1.61 16 3 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 4 C 0.03 0.78 4.37 -27.88 -0.12 0.66 16 5 C -0.49 -14.12 8.84 -34.44 -0.30 -14.42 16 6 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.91 -27.97 13.29 55.43 0.74 -27.23 16 9 Si 0.89 22.91 29.54 -169.99 -5.02 17.89 16 10 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.50 -9.92 4.16 -236.32 -0.98 -10.90 16 14 C 0.02 0.43 8.33 60.06 0.50 0.93 16 15 C 0.04 0.55 5.02 -4.97 -0.02 0.52 16 16 C 0.51 7.98 7.56 -10.98 -0.08 7.89 16 17 O -0.51 -10.27 14.31 5.56 0.08 -10.19 16 18 N -0.74 -8.32 5.55 -61.47 -0.34 -8.66 16 19 C 0.16 1.72 5.80 -5.19 -0.03 1.69 16 20 C -0.10 -0.92 5.25 -104.62 -0.55 -1.47 16 21 C -0.10 -0.81 9.70 -39.59 -0.38 -1.20 16 22 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 23 C -0.12 -0.80 10.05 -39.58 -0.40 -1.19 16 24 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 25 C -0.10 -0.84 9.70 -39.58 -0.38 -1.22 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.54 6.91 -51.93 -0.36 0.18 16 28 H 0.05 0.95 6.42 -51.93 -0.33 0.62 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.58 6.26 -51.93 -0.33 0.25 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.07 1.45 5.88 -51.93 -0.31 1.14 16 33 H 0.08 1.77 6.21 -51.93 -0.32 1.45 16 34 H 0.01 0.17 6.46 -51.93 -0.34 -0.17 16 35 H 0.10 1.34 7.93 -51.93 -0.41 0.93 16 36 H 0.05 0.69 7.06 -51.93 -0.37 0.32 16 37 H 0.40 3.49 8.46 -40.82 -0.35 3.14 16 38 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 40 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 357.34 15.07 5.39 5.39 Total: -1.00 -34.28 357.34 -9.51 -43.79 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.86 Total: 0.09 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -2.51 Total: -10.18 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.59 Total: -46.79 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.28 -9.51 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411393295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.838 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds