Wall clock time and date at job start Tue Mar 31 2020 08:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21291 * 119.99870 * 2 1 4 4 N 1.34772 * 120.00258 * 179.97438 * 2 1 3 5 5 C 1.39918 * 120.00225 * 185.46663 * 4 2 1 6 6 C 1.38895 * 120.07293 * 214.10703 * 5 4 2 7 7 C 1.38093 * 119.92712 * 180.02562 * 6 5 4 8 8 C 1.38301 * 120.07166 * 359.73257 * 7 6 5 9 9 C 1.38255 * 120.14377 * 0.53813 * 8 7 6 10 10 C 1.50695 * 119.97184 * 179.72929 * 9 8 7 11 11 H 1.08998 * 109.47809 * 199.73117 * 10 9 8 12 12 C 1.53005 * 109.46905 * 79.72801 * 10 9 8 13 13 N 1.46903 * 109.46996 * 319.73251 * 10 9 8 14 14 C 1.46902 * 111.00029 * 217.90339 * 13 10 9 15 15 H 1.09000 * 109.46988 * 22.17472 * 14 13 10 16 16 C 1.52995 * 109.46889 * 262.17037 * 14 13 10 17 17 C 1.53003 * 109.46741 * 142.17146 * 14 13 10 18 18 C 1.50698 * 109.47362 * 295.00003 * 17 14 13 19 19 H 1.08004 * 119.99958 * 0.02562 * 18 17 14 20 20 C 1.37873 * 120.00227 * 180.02562 * 18 17 14 21 21 N 1.31511 * 119.99981 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00201 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47563 * 59.99232 * 22 20 18 24 24 H 1.48499 * 109.47152 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46925 * 299.99355 * 22 20 18 26 26 C 1.38142 * 120.06813 * 359.46127 * 9 8 7 27 27 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47595 * 299.99648 * 1 2 3 29 29 H 1.08998 * 109.47111 * 60.00288 * 1 2 3 30 30 H 0.97005 * 120.00140 * 5.47400 * 4 2 1 31 31 H 1.07998 * 120.03295 * 0.04416 * 6 5 4 32 32 H 1.08007 * 119.96167 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.93083 * 180.27194 * 8 7 6 34 34 H 1.08991 * 109.46923 * 58.84711 * 12 10 9 35 35 H 1.09002 * 109.46848 * 178.84237 * 12 10 9 36 36 H 1.09005 * 109.47113 * 298.83892 * 12 10 9 37 37 H 1.00908 * 111.00020 * 93.95171 * 13 10 9 38 38 H 1.08991 * 109.47348 * 61.15349 * 16 14 13 39 39 H 1.09011 * 109.46845 * 181.15018 * 16 14 13 40 40 H 1.08997 * 109.47710 * 301.14560 * 16 14 13 41 41 H 1.09000 * 109.47301 * 55.00279 * 17 14 13 42 42 H 1.09005 * 109.46985 * 174.99971 * 17 14 13 43 43 H 0.97007 * 120.00098 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.03604 * 180.29474 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5753 -1.1698 0.1160 6 6 4.3265 -2.1335 -0.5445 7 6 5.7025 -2.1336 -0.4281 8 6 6.3331 -1.1723 0.3407 9 6 5.5879 -0.2151 1.0039 10 6 6.2785 0.8268 1.8455 11 1 5.5656 1.2569 2.5489 12 6 6.8304 1.9299 0.9400 13 7 7.3830 0.2039 2.5871 14 6 7.4937 0.7680 3.9390 15 1 6.5395 1.2084 4.2281 16 6 8.5788 1.8465 3.9542 17 6 7.8633 -0.3413 4.9258 18 6 6.7384 -1.3412 5.0019 19 1 5.8490 -1.1999 4.4057 20 6 6.8446 -2.4365 5.8326 21 7 7.9278 -2.6089 6.5581 22 14 5.4505 -3.6763 5.9264 23 1 5.2210 -4.2658 4.5829 24 1 5.8092 -4.7529 6.8842 25 1 4.2132 -2.9960 6.3863 26 6 4.2110 -0.2094 0.8915 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6993 -2.0054 -0.0792 31 1 3.8350 -2.8816 -1.1487 32 1 6.2872 -2.8830 -0.9411 33 1 7.4097 -1.1720 0.4267 34 1 6.0136 2.3782 0.3746 35 1 7.3120 2.6939 1.5504 36 1 7.5587 1.5033 0.2503 37 1 8.2533 0.2958 2.0846 38 1 8.3056 2.6465 3.2664 39 1 8.6751 2.2508 4.9620 40 1 9.5289 1.4105 3.6454 41 1 8.7711 -0.8409 4.5876 42 1 8.0324 0.0911 5.9120 43 1 8.0027 -3.3797 7.1423 44 1 3.6297 0.5415 1.4060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411443365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:01 Heat of formation + Delta-G solvation = -18.712078 kcal Electronic energy + Delta-G solvation = -23333.891576 eV Core-core repulsion = 20057.642861 eV Total energy + Delta-G solvation = -3276.248715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45235 -38.71205 -36.95039 -34.79506 -33.30799 -31.94882 -30.88256 -29.67865 -28.27936 -27.60321 -27.18656 -23.34902 -22.96259 -22.78920 -20.70542 -20.13414 -19.64566 -17.31282 -16.90709 -16.11466 -15.97373 -15.54116 -14.97722 -14.77700 -14.29257 -14.11666 -13.85851 -13.63414 -13.27518 -12.97998 -12.82942 -12.68459 -12.62379 -12.37033 -12.07053 -11.90578 -11.61916 -11.47462 -11.36249 -11.01798 -10.90552 -10.76111 -10.52938 -10.39934 -10.12942 -9.95484 -9.85808 -9.21091 -8.89619 -8.41325 -8.17670 -7.87861 -7.50633 -5.80545 -3.76934 1.54318 1.72520 2.55757 3.03384 3.44216 3.47368 3.51831 4.09028 4.55629 4.62699 4.79945 4.89738 5.10931 5.12785 5.20822 5.34611 5.45470 5.50135 5.55672 5.57177 5.70915 5.79090 5.79759 5.84570 5.89701 5.95147 6.09912 6.20420 6.28633 6.33530 6.49586 6.50523 6.60535 6.69039 6.80179 7.03394 7.13012 7.31308 7.34922 7.65293 7.76947 8.02970 8.12148 8.14324 8.25265 8.69275 9.27737 9.83598 11.31750 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012108 B = 0.005266 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.924049 B = 5315.405902 C = 6426.230203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.528 6.528 4 N -0.672 5.672 5 C 0.133 3.867 6 C -0.154 4.154 7 C -0.106 4.106 8 C -0.099 4.099 9 C -0.034 4.034 10 C 0.122 3.878 11 H 0.079 0.921 12 C -0.172 4.172 13 N -0.656 5.656 14 C 0.089 3.911 15 H 0.060 0.940 16 C -0.177 4.177 17 C 0.035 3.965 18 C -0.482 4.482 19 H 0.055 0.945 20 C 0.051 3.949 21 N -0.905 5.905 22 Si 0.886 3.114 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.115 4.115 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.408 0.592 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.330 0.670 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.018 0.982 42 H 0.015 0.985 43 H 0.256 0.744 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.074 4.223 -15.762 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.295 3.705 3 O -0.403 6.403 4 N -0.318 5.318 5 C 0.040 3.960 6 C -0.175 4.175 7 C -0.125 4.125 8 C -0.118 4.118 9 C -0.036 4.036 10 C 0.011 3.989 11 H 0.097 0.903 12 C -0.231 4.231 13 N -0.285 5.285 14 C -0.020 4.020 15 H 0.078 0.922 16 C -0.236 4.236 17 C -0.002 4.002 18 C -0.521 4.521 19 H 0.073 0.927 20 C -0.148 4.148 21 N -0.547 5.547 22 Si 0.715 3.285 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.135 4.135 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.244 0.756 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.036 0.964 42 H 0.033 0.967 43 H 0.066 0.934 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.010 4.341 -15.398 18.872 hybrid contribution -0.671 -0.514 -0.085 0.849 sum -10.681 3.828 -15.482 19.195 Atomic orbital electron populations 1.21851 0.91095 1.04408 1.05537 1.20959 0.90756 0.83345 0.75439 1.90756 1.70474 1.31192 1.47877 1.43638 1.05695 1.09602 1.72863 1.17607 0.82147 0.98211 0.98068 1.20727 0.94287 1.00559 1.01895 1.20886 0.93625 0.98663 0.99286 1.20915 1.00369 0.94294 0.96223 1.19754 0.92302 0.96215 0.95287 1.20537 0.94315 0.90292 0.93743 0.90297 1.22515 1.01347 0.99032 1.00206 1.60530 1.06117 1.59135 1.02717 1.21919 0.96494 0.94285 0.89255 0.92207 1.22574 1.00434 0.99246 1.01333 1.19110 0.97165 0.92057 0.91911 1.21084 1.02442 1.06533 1.21994 0.92686 1.24961 0.95549 0.98055 0.96258 1.69953 1.27186 1.29512 1.28025 0.86757 0.82916 0.81306 0.77570 1.20421 1.21677 1.20700 1.20882 0.94319 0.99567 0.98761 0.90440 0.88350 0.88607 0.75606 0.86480 0.86082 0.85769 0.92345 0.92382 0.92408 0.85124 0.94235 0.92536 0.92897 0.96402 0.96725 0.93413 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.39 36.01 0.37 -0.78 16 2 C 0.51 6.05 7.67 -10.99 -0.08 5.96 16 3 O -0.53 -8.64 14.85 5.55 0.08 -8.56 16 4 N -0.67 -7.68 5.34 -9.86 -0.05 -7.74 16 5 C 0.13 1.97 6.26 -83.70 -0.52 1.45 16 6 C -0.15 -2.09 9.97 -39.39 -0.39 -2.49 16 7 C -0.11 -1.51 10.04 -39.61 -0.40 -1.91 16 8 C -0.10 -1.59 9.32 -39.55 -0.37 -1.96 16 9 C -0.03 -0.58 4.95 -104.65 -0.52 -1.10 16 10 C 0.12 2.04 2.90 -68.86 -0.20 1.84 16 11 H 0.08 1.42 6.94 -51.93 -0.36 1.06 16 12 C -0.17 -2.37 9.12 37.16 0.34 -2.03 16 13 N -0.66 -12.21 5.12 -100.95 -0.52 -12.72 16 14 C 0.09 1.82 2.64 -67.71 -0.18 1.64 16 15 H 0.06 1.26 7.09 -51.93 -0.37 0.89 16 16 C -0.18 -2.97 9.14 37.15 0.34 -2.63 16 17 C 0.03 0.91 4.65 -27.88 -0.13 0.78 16 18 C -0.48 -13.85 8.84 -34.44 -0.30 -14.16 16 19 H 0.05 1.60 7.74 -52.48 -0.41 1.19 16 20 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 21 N -0.91 -27.91 13.29 55.43 0.74 -27.18 16 22 Si 0.89 22.69 29.54 -169.99 -5.02 17.67 16 23 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 26 C -0.11 -1.97 8.28 -39.39 -0.33 -2.29 16 27 H 0.08 0.32 7.92 -51.93 -0.41 -0.09 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.41 3.15 8.66 -40.82 -0.35 2.79 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.12 1.91 7.67 -52.48 -0.40 1.51 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 36 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 37 H 0.33 5.55 7.74 -39.29 -0.30 5.24 16 38 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 39 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.13 2.29 6.46 -52.49 -0.34 1.95 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -34.68 361.93 -8.77 -43.45 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.99 Total: 5.91 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.47 Total: -16.30 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.17 Total: -47.63 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.68 -8.77 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411443365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.738 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds