Wall clock time and date at job start Tue Mar 31 2020 08:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21291 * 119.99870 * 2 1 4 4 N 1.34772 * 120.00258 * 179.97438 * 2 1 3 5 5 C 1.39918 * 120.00225 * 185.46663 * 4 2 1 6 6 C 1.38895 * 120.07293 * 214.10703 * 5 4 2 7 7 C 1.38093 * 119.92712 * 180.02562 * 6 5 4 8 8 C 1.38301 * 120.07166 * 359.73257 * 7 6 5 9 9 C 1.38255 * 120.14377 * 0.53813 * 8 7 6 10 10 C 1.50695 * 119.97184 * 179.72929 * 9 8 7 11 11 H 1.08998 * 109.47809 * 199.73117 * 10 9 8 12 12 C 1.53005 * 109.46905 * 79.72801 * 10 9 8 13 13 N 1.46903 * 109.46996 * 319.73251 * 10 9 8 14 14 C 1.46902 * 111.00029 * 217.90339 * 13 10 9 15 15 H 1.09000 * 109.46988 * 22.17472 * 14 13 10 16 16 C 1.52995 * 109.46889 * 262.17037 * 14 13 10 17 17 C 1.53003 * 109.46741 * 142.17146 * 14 13 10 18 18 C 1.50698 * 109.47362 * 295.00003 * 17 14 13 19 19 H 1.08004 * 119.99958 * 0.02562 * 18 17 14 20 20 C 1.37873 * 120.00227 * 180.02562 * 18 17 14 21 21 N 1.31511 * 119.99981 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00201 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47563 * 59.99232 * 22 20 18 24 24 H 1.48499 * 109.47152 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46925 * 299.99355 * 22 20 18 26 26 C 1.38142 * 120.06813 * 359.46127 * 9 8 7 27 27 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47595 * 299.99648 * 1 2 3 29 29 H 1.08998 * 109.47111 * 60.00288 * 1 2 3 30 30 H 0.97005 * 120.00140 * 5.47400 * 4 2 1 31 31 H 1.07998 * 120.03295 * 0.04416 * 6 5 4 32 32 H 1.08007 * 119.96167 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.93083 * 180.27194 * 8 7 6 34 34 H 1.08991 * 109.46923 * 58.84711 * 12 10 9 35 35 H 1.09002 * 109.46848 * 178.84237 * 12 10 9 36 36 H 1.09005 * 109.47113 * 298.83892 * 12 10 9 37 37 H 1.00908 * 111.00020 * 93.95171 * 13 10 9 38 38 H 1.08991 * 109.47348 * 61.15349 * 16 14 13 39 39 H 1.09011 * 109.46845 * 181.15018 * 16 14 13 40 40 H 1.08997 * 109.47710 * 301.14560 * 16 14 13 41 41 H 1.09000 * 109.47301 * 55.00279 * 17 14 13 42 42 H 1.09005 * 109.46985 * 174.99971 * 17 14 13 43 43 H 0.97007 * 120.00098 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.03604 * 180.29474 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5753 -1.1698 0.1160 6 6 4.3265 -2.1335 -0.5445 7 6 5.7025 -2.1336 -0.4281 8 6 6.3331 -1.1723 0.3407 9 6 5.5879 -0.2151 1.0039 10 6 6.2785 0.8268 1.8455 11 1 5.5656 1.2569 2.5489 12 6 6.8304 1.9299 0.9400 13 7 7.3830 0.2039 2.5871 14 6 7.4937 0.7680 3.9390 15 1 6.5395 1.2084 4.2281 16 6 8.5788 1.8465 3.9542 17 6 7.8633 -0.3413 4.9258 18 6 6.7384 -1.3412 5.0019 19 1 5.8490 -1.1999 4.4057 20 6 6.8446 -2.4365 5.8326 21 7 7.9278 -2.6089 6.5581 22 14 5.4505 -3.6763 5.9264 23 1 5.2210 -4.2658 4.5829 24 1 5.8092 -4.7529 6.8842 25 1 4.2132 -2.9960 6.3863 26 6 4.2110 -0.2094 0.8915 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6993 -2.0054 -0.0792 31 1 3.8350 -2.8816 -1.1487 32 1 6.2872 -2.8830 -0.9411 33 1 7.4097 -1.1720 0.4267 34 1 6.0136 2.3782 0.3746 35 1 7.3120 2.6939 1.5504 36 1 7.5587 1.5033 0.2503 37 1 8.2533 0.2958 2.0846 38 1 8.3056 2.6465 3.2664 39 1 8.6751 2.2508 4.9620 40 1 9.5289 1.4105 3.6454 41 1 8.7711 -0.8409 4.5876 42 1 8.0324 0.0911 5.9120 43 1 8.0027 -3.3797 7.1423 44 1 3.6297 0.5415 1.4060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411443365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:00 Heat of formation + Delta-G solvation = -41.704029 kcal Electronic energy + Delta-G solvation = -23334.888582 eV Core-core repulsion = 20057.642861 eV Total energy + Delta-G solvation = -3277.245721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48855 -39.89484 -38.35689 -36.00706 -35.02763 -33.73957 -31.78192 -30.94929 -29.30989 -29.12323 -28.86221 -25.01513 -24.51389 -23.94162 -21.84672 -21.36824 -21.20254 -18.50008 -18.23441 -17.87050 -17.09640 -16.64368 -16.56994 -16.19079 -15.96042 -15.35448 -15.07322 -14.83911 -14.46208 -14.34472 -14.09637 -13.90564 -13.70779 -13.51600 -13.40350 -13.19801 -13.16466 -12.98500 -12.70957 -12.63926 -12.43566 -12.33558 -12.15082 -11.93179 -11.86460 -11.36470 -11.07461 -11.00057 -10.88578 -10.46847 -9.61307 -9.00455 -8.99216 -8.08134 -6.11723 0.40735 0.54122 1.37567 1.40858 1.48523 1.61632 2.16951 2.47042 2.91045 3.23719 3.41493 3.79891 3.95850 4.04571 4.16704 4.28823 4.31628 4.37608 4.44805 4.45485 4.55800 4.57968 4.62764 4.67520 4.70866 4.81365 4.95633 5.01321 5.06650 5.13179 5.17799 5.28636 5.33804 5.40472 5.48216 5.52769 5.64439 5.66369 5.85876 5.92146 6.18015 6.37475 6.46903 6.51082 6.80518 7.01254 7.15705 7.52877 9.03886 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012108 B = 0.005266 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.924049 B = 5315.405902 C = 6426.230203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.498 3.502 3 O -0.580 6.580 4 N -0.663 5.663 5 C 0.126 3.874 6 C -0.151 4.151 7 C -0.107 4.107 8 C -0.118 4.118 9 C -0.054 4.054 10 C 0.126 3.874 11 H 0.057 0.943 12 C -0.160 4.160 13 N -0.668 5.668 14 C 0.100 3.900 15 H 0.048 0.952 16 C -0.166 4.166 17 C 0.041 3.959 18 C -0.492 4.492 19 H 0.047 0.953 20 C -0.003 4.003 21 N -0.939 5.939 22 Si 0.950 3.050 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.142 4.142 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.428 0.572 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.341 0.659 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.058 0.942 41 H -0.007 1.007 42 H -0.011 1.011 43 H 0.258 0.742 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 3.160 -17.609 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.289 3.711 3 O -0.459 6.459 4 N -0.310 5.310 5 C 0.032 3.968 6 C -0.171 4.171 7 C -0.125 4.125 8 C -0.137 4.137 9 C -0.055 4.055 10 C 0.016 3.984 11 H 0.075 0.925 12 C -0.219 4.219 13 N -0.298 5.298 14 C -0.009 4.009 15 H 0.066 0.934 16 C -0.225 4.225 17 C 0.003 3.997 18 C -0.530 4.530 19 H 0.065 0.935 20 C -0.199 4.199 21 N -0.582 5.582 22 Si 0.776 3.224 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.163 4.163 27 H 0.129 0.871 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.267 0.733 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.144 0.856 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.161 0.839 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.012 0.988 42 H 0.008 0.992 43 H 0.067 0.933 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.573 3.257 -17.262 21.036 hybrid contribution -0.223 -0.205 0.465 0.555 sum -11.797 3.052 -16.797 20.751 Atomic orbital electron populations 1.21891 0.86732 1.06901 1.06294 1.21973 0.92774 0.82503 0.73831 1.90735 1.71929 1.33038 1.50179 1.43661 1.04506 1.10695 1.72117 1.17823 0.83955 0.97676 0.97339 1.21124 0.94116 1.00532 1.01292 1.21282 0.94397 0.98406 0.98441 1.21059 1.00554 0.94941 0.97173 1.19850 0.92593 0.96966 0.96111 1.20447 0.93158 0.91151 0.93618 0.92489 1.22380 1.01465 0.98127 0.99880 1.60312 1.07242 1.60029 1.02245 1.21563 0.97068 0.93253 0.89066 0.93394 1.22427 0.99223 0.98691 1.02129 1.18988 0.95343 0.93120 0.92202 1.21359 1.02801 1.07286 1.21598 0.93500 1.25775 0.98034 1.00111 0.95985 1.70078 1.29073 1.30258 1.28758 0.85732 0.79964 0.78927 0.77779 1.19863 1.20895 1.19901 1.20874 0.94482 1.00521 1.00377 0.87117 0.87981 0.87235 0.73293 0.82819 0.83294 0.85637 0.92436 0.91394 0.91128 0.83925 0.91419 0.92679 0.92314 0.98838 0.99248 0.93310 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 10.39 71.24 0.74 -1.02 16 2 C 0.50 11.42 7.67 87.66 0.67 12.09 16 3 O -0.58 -19.40 14.85 -3.06 -0.05 -19.44 16 4 N -0.66 -14.02 5.34 -303.51 -1.62 -15.64 16 5 C 0.13 3.63 6.26 38.16 0.24 3.87 16 6 C -0.15 -3.71 9.97 22.39 0.22 -3.49 16 7 C -0.11 -2.84 10.04 22.25 0.22 -2.61 16 8 C -0.12 -3.75 9.32 22.29 0.21 -3.54 16 9 C -0.05 -1.87 4.95 -19.88 -0.10 -1.97 16 10 C 0.13 4.32 2.90 44.17 0.13 4.45 16 11 H 0.06 2.16 6.94 -2.39 -0.02 2.14 16 12 C -0.16 -4.32 9.12 71.98 0.66 -3.66 16 13 N -0.67 -25.17 5.12 -473.31 -2.42 -27.59 16 14 C 0.10 4.15 2.64 44.91 0.12 4.27 16 15 H 0.05 2.09 7.09 -2.39 -0.02 2.07 16 16 C -0.17 -5.46 9.14 71.98 0.66 -4.80 16 17 C 0.04 2.20 4.65 29.85 0.14 2.34 16 18 C -0.49 -28.99 8.84 25.60 0.23 -28.76 16 19 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 20 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 21 N -0.94 -58.95 13.29 21.45 0.28 -58.66 16 22 Si 0.95 46.85 29.54 68.60 2.03 48.87 16 23 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 26 C -0.14 -4.99 8.28 22.39 0.19 -4.80 16 27 H 0.11 0.48 7.92 -2.39 -0.02 0.46 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.11 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.43 5.32 8.66 -92.70 -0.80 4.52 16 31 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.13 3.81 7.67 -2.91 -0.02 3.79 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.67 6.57 -2.39 -0.02 1.66 16 36 H 0.07 1.72 8.11 -2.38 -0.02 1.70 16 37 H 0.34 11.36 7.74 -89.69 -0.69 10.67 16 38 H 0.07 1.85 6.57 -2.39 -0.02 1.83 16 39 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.06 1.86 8.11 -2.39 -0.02 1.84 16 41 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 43 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 44 H 0.11 4.08 6.46 -2.91 -0.02 4.06 16 Total: -1.00 -78.02 361.93 2.51 -75.52 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.50 Total: 24.33 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 4.78 Total: -27.38 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -3.76 Total: -101.90 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -78.02 2.51 -75.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411443365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.813 kcal (2) G-P(sol) polarization free energy of solvation -78.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds