Wall clock time and date at job start Tue Mar 31 2020 07:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46933 * 2 1 4 4 N 1.46505 * 109.46925 * 119.99837 * 2 1 3 5 5 C 1.39666 * 120.00194 * 274.99633 * 4 2 1 6 6 C 1.38970 * 120.04339 * 0.02562 * 5 4 2 7 7 C 1.38114 * 120.03312 * 179.69733 * 6 5 4 8 8 C 1.38220 * 120.12879 * 0.25789 * 7 6 5 9 9 C 1.38773 * 120.09306 * 0.02562 * 8 7 6 10 10 O 1.35898 * 120.01931 * 180.02562 * 9 8 7 11 11 C 1.42896 * 116.99900 * 359.97438 * 10 9 8 12 12 C 1.53004 * 109.46971 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46927 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00330 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99946 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00070 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00230 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46928 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47033 * 119.99866 * 17 15 13 20 20 H 1.48501 * 109.47011 * 240.00034 * 17 15 13 21 21 C 1.38616 * 119.96403 * 0.02562 * 9 8 7 22 22 C 1.53002 * 109.47024 * 239.99970 * 2 1 3 23 23 C 1.53928 * 113.73478 * 156.72858 * 22 2 1 24 24 N 1.47957 * 86.18384 * 221.91941 * 23 22 2 25 25 C 1.47967 * 90.75838 * 24.68826 * 24 23 22 26 26 H 1.09001 * 109.47362 * 59.99701 * 1 2 3 27 27 H 1.08999 * 109.47549 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47218 * 300.00056 * 1 2 3 29 29 H 0.96997 * 119.99568 * 95.00107 * 4 2 1 30 30 H 1.08002 * 119.98748 * 359.97438 * 6 5 4 31 31 H 1.08002 * 119.94043 * 180.27544 * 7 6 5 32 32 H 1.08002 * 119.95693 * 179.97438 * 8 7 6 33 33 H 1.08997 * 109.47330 * 300.00202 * 11 10 9 34 34 H 1.08998 * 109.47258 * 60.00297 * 11 10 9 35 35 H 1.08997 * 109.47336 * 300.00293 * 12 11 10 36 36 H 1.09001 * 109.46676 * 60.00872 * 12 11 10 37 37 H 0.96999 * 120.00462 * 180.02562 * 16 15 13 38 38 H 1.07993 * 120.06908 * 180.02562 * 21 9 8 39 39 H 1.09005 * 112.93653 * 288.43229 * 22 2 1 40 40 H 1.09003 * 113.76124 * 336.24254 * 23 22 2 41 41 H 1.09004 * 113.76240 * 107.59938 * 23 22 2 42 42 H 1.00897 * 111.00248 * 271.80144 * 24 23 22 43 43 H 1.09000 * 113.75782 * 220.98813 * 25 24 23 44 44 H 1.09001 * 113.76013 * 89.63079 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1517 0.0061 2.3993 6 6 1.8211 1.3544 2.4628 7 6 1.9472 2.0417 3.6542 8 6 2.4073 1.3925 4.7844 9 6 2.7445 0.0476 4.7255 10 8 3.1962 -0.5893 5.8377 11 6 3.2995 0.1869 7.0330 12 6 3.8207 -0.6943 8.1699 13 6 3.9303 0.1245 9.4304 14 1 3.6552 1.1688 9.4215 15 6 4.3816 -0.4596 10.5949 16 7 4.7171 -1.7312 10.6056 17 14 4.5167 0.5551 12.1574 18 1 4.0823 1.9482 11.8820 19 1 3.6494 -0.0359 13.2080 20 1 5.9264 0.5598 12.6242 21 6 2.6205 -0.6456 3.5316 22 6 2.0400 -0.7213 -1.2493 23 6 3.4669 -0.3155 -1.6598 24 7 2.9605 -0.3147 -3.0500 25 6 1.5822 -0.0739 -2.5686 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.2490 -1.6317 1.1526 30 1 1.4611 1.8641 1.5813 31 1 1.6856 3.0884 3.7030 32 1 2.5052 1.9327 5.7144 33 1 3.9887 1.0154 6.8698 34 1 2.3173 0.5782 7.2981 35 1 3.1313 -1.5226 8.3330 36 1 4.8029 -1.0859 7.9051 37 1 5.0343 -2.1423 11.4249 38 1 2.8821 -1.6923 3.4839 39 1 1.8823 -1.7992 -1.2116 40 1 3.7641 0.6696 -1.3001 41 1 4.2152 -1.0839 -1.4654 42 1 3.0434 -1.2304 -3.4656 43 1 0.8245 -0.6493 -3.1005 44 1 1.3279 0.9818 -2.4748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423024468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:02 Heat of formation + Delta-G solvation = 12.581548 kcal Electronic energy + Delta-G solvation = -22096.413828 eV Core-core repulsion = 18821.522106 eV Total energy + Delta-G solvation = -3274.891722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -40.44738 -39.58943 -37.73040 -35.40143 -33.33570 -31.81209 -30.67531 -29.09834 -28.20971 -27.07338 -26.24088 -24.98895 -22.86724 -22.60418 -21.34678 -20.38594 -20.24040 -17.98233 -17.04020 -16.57526 -16.31418 -15.66833 -15.44583 -15.24713 -14.89553 -14.52622 -14.37126 -14.21315 -13.57466 -13.36442 -13.04913 -13.03389 -12.74167 -12.68992 -12.47439 -12.30820 -12.06845 -11.57624 -11.42752 -11.21802 -11.11355 -11.00343 -10.89935 -10.71137 -10.42760 -10.01727 -9.71608 -9.62408 -9.26086 -8.97906 -8.43931 -7.93858 -7.31825 -6.08855 -4.13119 1.72817 1.88309 3.13397 3.27631 3.34738 3.38660 3.56989 3.91839 4.06874 4.13231 4.21050 4.43968 4.69043 4.78480 4.92769 5.03629 5.09158 5.19599 5.23228 5.27635 5.27782 5.36033 5.39728 5.52120 5.55441 5.58539 5.66977 5.72931 5.79084 5.94390 6.09818 6.11124 6.13138 6.42171 6.64006 6.68228 6.77172 6.81081 6.90594 7.39429 7.53887 7.66941 7.66977 7.85454 8.13376 8.26704 8.92837 9.51079 11.02823 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.040873 B = 0.002326 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.882319 B =12036.404116 C =12313.452959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.161 3.839 3 H 0.082 0.918 4 N -0.743 5.743 5 C 0.249 3.751 6 C -0.245 4.245 7 C -0.037 4.037 8 C -0.265 4.265 9 C 0.188 3.812 10 O -0.317 6.317 11 C 0.066 3.934 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.239 4.239 22 C -0.165 4.165 23 C 0.025 3.975 24 N -0.663 5.663 25 C 0.029 3.971 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.396 0.604 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.336 0.664 43 H 0.074 0.926 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 3.308 -25.817 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.054 3.946 3 H 0.100 0.900 4 N -0.373 5.373 5 C 0.146 3.854 6 C -0.268 4.268 7 C -0.056 4.056 8 C -0.285 4.285 9 C 0.140 3.860 10 O -0.229 6.229 11 C -0.008 4.008 12 C -0.013 4.013 13 C -0.563 4.563 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.262 4.262 22 C -0.185 4.185 23 C -0.104 4.104 24 N -0.289 5.289 25 C -0.102 4.102 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.231 0.769 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.151 0.849 43 H 0.093 0.907 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.235 3.811 -26.187 27.435 hybrid contribution -0.236 -0.645 1.525 1.673 sum -7.471 3.166 -24.662 25.963 Atomic orbital electron populations 1.22289 0.95861 1.02377 1.02313 1.20881 0.93605 0.96704 0.83394 0.89999 1.44619 1.73830 1.12076 1.06778 1.17339 0.91973 0.90965 0.85107 1.20407 1.14238 0.93249 0.98878 1.20622 0.94564 0.98731 0.91658 1.21148 1.12158 0.94727 1.00470 1.18827 0.89736 0.90514 0.86949 1.86145 1.78883 1.40435 1.17475 1.23310 0.99940 0.95504 0.82008 1.19135 0.97315 0.95246 0.89581 1.21019 1.44871 0.96571 0.93800 0.92286 1.24999 0.95123 0.95027 0.99136 1.69986 1.43951 1.10994 1.27898 0.86432 0.77784 0.80284 0.82893 1.19621 1.20859 1.20856 1.19664 1.15135 1.00759 0.90649 1.24571 0.97324 1.01070 0.95558 1.23688 0.95318 1.02599 0.88833 1.65069 1.09952 1.34950 1.18971 1.23627 0.92187 1.01882 0.92483 0.91942 0.92503 0.91791 0.76925 0.86664 0.86404 0.85615 0.93085 0.93104 0.95444 0.95438 0.92791 0.85880 0.88786 0.88254 0.90823 0.84917 0.90749 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 9.23 37.16 0.34 -0.85 16 2 C 0.16 1.18 2.11 -67.93 -0.14 1.04 16 3 H 0.08 0.65 6.28 -51.93 -0.33 0.33 16 4 N -0.74 -7.07 5.25 -52.18 -0.27 -7.35 16 5 C 0.25 3.22 6.63 -83.81 -0.56 2.66 16 6 C -0.25 -3.09 8.84 -39.36 -0.35 -3.44 16 7 C -0.04 -0.50 10.03 -39.63 -0.40 -0.90 16 8 C -0.26 -4.33 9.04 -39.39 -0.36 -4.68 16 9 C 0.19 3.40 6.68 -39.24 -0.26 3.14 16 10 O -0.32 -6.73 10.13 -19.42 -0.20 -6.93 16 11 C 0.07 1.46 4.68 37.16 0.17 1.64 16 12 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 13 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 17 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.24 -3.73 9.83 -39.24 -0.39 -4.12 16 22 C -0.17 -0.96 3.48 -89.69 -0.31 -1.27 16 23 C 0.03 0.17 8.46 -2.77 -0.02 0.15 16 24 N -0.66 -4.45 8.56 -117.03 -1.00 -5.46 16 25 C 0.03 0.16 7.52 -2.77 -0.02 0.14 16 26 H 0.06 0.34 7.43 -51.93 -0.39 -0.04 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.55 7.70 -51.93 -0.40 0.15 16 29 H 0.40 3.39 8.61 -40.82 -0.35 3.04 16 30 H 0.12 1.20 6.11 -52.49 -0.32 0.88 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 33 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 34 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.76 7.96 -51.93 -0.41 0.34 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.34 1.80 8.89 -39.29 -0.35 1.45 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.55 8.06 -51.93 -0.42 0.13 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -31.03 358.19 -10.22 -41.25 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.01 Total: 2.13 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -2.85 Total: -19.50 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.54 Total: -38.75 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.20 Total: -6.93 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.03 -10.22 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423024468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.828 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds