Wall clock time and date at job start Tue Mar 31 2020 07:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46933 * 2 1 4 4 N 1.46505 * 109.46925 * 119.99837 * 2 1 3 5 5 C 1.39666 * 120.00194 * 274.99633 * 4 2 1 6 6 C 1.38970 * 120.04339 * 0.02562 * 5 4 2 7 7 C 1.38114 * 120.03312 * 179.69733 * 6 5 4 8 8 C 1.38220 * 120.12879 * 0.25789 * 7 6 5 9 9 C 1.38773 * 120.09306 * 0.02562 * 8 7 6 10 10 O 1.35898 * 120.01931 * 180.02562 * 9 8 7 11 11 C 1.42896 * 116.99900 * 359.97438 * 10 9 8 12 12 C 1.53004 * 109.46971 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46927 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00330 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99946 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00070 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00230 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46928 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47033 * 119.99866 * 17 15 13 20 20 H 1.48501 * 109.47011 * 240.00034 * 17 15 13 21 21 C 1.38616 * 119.96403 * 0.02562 * 9 8 7 22 22 C 1.53002 * 109.47024 * 239.99970 * 2 1 3 23 23 C 1.53928 * 113.73478 * 156.72858 * 22 2 1 24 24 N 1.47957 * 86.18384 * 221.91941 * 23 22 2 25 25 C 1.47967 * 90.75838 * 24.68826 * 24 23 22 26 26 H 1.09001 * 109.47362 * 59.99701 * 1 2 3 27 27 H 1.08999 * 109.47549 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47218 * 300.00056 * 1 2 3 29 29 H 0.96997 * 119.99568 * 95.00107 * 4 2 1 30 30 H 1.08002 * 119.98748 * 359.97438 * 6 5 4 31 31 H 1.08002 * 119.94043 * 180.27544 * 7 6 5 32 32 H 1.08002 * 119.95693 * 179.97438 * 8 7 6 33 33 H 1.08997 * 109.47330 * 300.00202 * 11 10 9 34 34 H 1.08998 * 109.47258 * 60.00297 * 11 10 9 35 35 H 1.08997 * 109.47336 * 300.00293 * 12 11 10 36 36 H 1.09001 * 109.46676 * 60.00872 * 12 11 10 37 37 H 0.96999 * 120.00462 * 180.02562 * 16 15 13 38 38 H 1.07993 * 120.06908 * 180.02562 * 21 9 8 39 39 H 1.09005 * 112.93653 * 288.43229 * 22 2 1 40 40 H 1.09003 * 113.76124 * 336.24254 * 23 22 2 41 41 H 1.09004 * 113.76240 * 107.59938 * 23 22 2 42 42 H 1.00897 * 111.00248 * 271.80144 * 24 23 22 43 43 H 1.09000 * 113.75782 * 220.98813 * 25 24 23 44 44 H 1.09001 * 113.76013 * 89.63079 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1517 0.0061 2.3993 6 6 1.8211 1.3544 2.4628 7 6 1.9472 2.0417 3.6542 8 6 2.4073 1.3925 4.7844 9 6 2.7445 0.0476 4.7255 10 8 3.1962 -0.5893 5.8377 11 6 3.2995 0.1869 7.0330 12 6 3.8207 -0.6943 8.1699 13 6 3.9303 0.1245 9.4304 14 1 3.6552 1.1688 9.4215 15 6 4.3816 -0.4596 10.5949 16 7 4.7171 -1.7312 10.6056 17 14 4.5167 0.5551 12.1574 18 1 4.0823 1.9482 11.8820 19 1 3.6494 -0.0359 13.2080 20 1 5.9264 0.5598 12.6242 21 6 2.6205 -0.6456 3.5316 22 6 2.0400 -0.7213 -1.2493 23 6 3.4669 -0.3155 -1.6598 24 7 2.9605 -0.3147 -3.0500 25 6 1.5822 -0.0739 -2.5686 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.2490 -1.6317 1.1526 30 1 1.4611 1.8641 1.5813 31 1 1.6856 3.0884 3.7030 32 1 2.5052 1.9327 5.7144 33 1 3.9887 1.0154 6.8698 34 1 2.3173 0.5782 7.2981 35 1 3.1313 -1.5226 8.3330 36 1 4.8029 -1.0859 7.9051 37 1 5.0343 -2.1423 11.4249 38 1 2.8821 -1.6923 3.4839 39 1 1.8823 -1.7992 -1.2116 40 1 3.7641 0.6696 -1.3001 41 1 4.2152 -1.0839 -1.4654 42 1 3.0434 -1.2304 -3.4656 43 1 0.8245 -0.6493 -3.1005 44 1 1.3279 0.9818 -2.4748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000423024468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:00 Heat of formation + Delta-G solvation = -8.497631 kcal Electronic energy + Delta-G solvation = -22097.327890 eV Core-core repulsion = 18821.522106 eV Total energy + Delta-G solvation = -3275.805783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.21272 -40.65413 -38.93760 -36.37972 -35.41536 -32.73926 -32.42785 -30.50504 -29.16091 -27.64589 -26.98028 -26.67979 -23.96345 -23.79726 -22.68251 -21.54763 -20.98646 -19.31924 -18.32310 -17.61273 -17.31618 -16.90946 -16.90377 -16.57298 -16.54780 -15.81834 -15.12152 -14.94529 -14.46954 -14.41471 -14.32836 -14.23708 -13.94273 -13.52607 -13.48400 -13.25153 -13.17947 -13.00584 -12.79923 -12.58691 -12.51966 -12.14767 -11.99572 -11.73346 -11.60274 -11.55035 -11.53377 -11.36576 -10.84295 -10.62963 -9.47484 -9.21361 -8.31961 -8.26946 -6.40528 0.58063 0.70705 1.40847 1.42013 1.55657 2.15872 2.39266 2.72140 2.97010 3.07362 3.11082 3.47627 3.67903 4.00001 4.15286 4.21388 4.26095 4.28807 4.33262 4.40090 4.41992 4.52440 4.54402 4.67806 4.72852 4.74788 4.75514 4.81175 4.90664 4.93602 5.05666 5.11428 5.24736 5.30741 5.33355 5.39176 5.46916 5.53537 5.65506 5.67801 5.77699 6.07224 6.38781 6.44313 6.62703 6.74469 6.82418 7.29514 8.86511 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.040873 B = 0.002326 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.882319 B =12036.404116 C =12313.452959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.159 3.841 3 H 0.082 0.918 4 N -0.733 5.733 5 C 0.258 3.742 6 C -0.237 4.237 7 C -0.032 4.032 8 C -0.283 4.283 9 C 0.152 3.848 10 O -0.343 6.343 11 C 0.087 3.913 12 C 0.028 3.972 13 C -0.544 4.544 14 H 0.071 0.929 15 C 0.000 4.000 16 N -0.931 5.931 17 Si 0.977 3.023 18 H -0.257 1.257 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.254 4.254 22 C -0.153 4.153 23 C 0.021 3.979 24 N -0.678 5.678 25 C 0.033 3.967 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.402 0.598 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.120 0.880 33 H 0.059 0.941 34 H 0.059 0.941 35 H -0.002 1.002 36 H -0.002 1.002 37 H 0.267 0.733 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.344 0.656 43 H 0.089 0.911 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 5.095 -27.510 29.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.054 3.946 3 H 0.100 0.900 4 N -0.362 5.362 5 C 0.153 3.847 6 C -0.260 4.260 7 C -0.051 4.051 8 C -0.304 4.304 9 C 0.105 3.895 10 O -0.257 6.257 11 C 0.012 3.988 12 C -0.009 4.009 13 C -0.582 4.582 14 H 0.089 0.911 15 C -0.199 4.199 16 N -0.571 5.571 17 Si 0.801 3.199 18 H -0.181 1.181 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.278 4.278 22 C -0.173 4.173 23 C -0.109 4.109 24 N -0.305 5.305 25 C -0.097 4.097 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.237 0.763 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.138 0.862 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.076 0.924 38 H 0.139 0.861 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.159 0.841 43 H 0.107 0.893 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.396 5.590 -27.944 29.709 hybrid contribution 0.084 -1.245 1.809 2.198 sum -8.312 4.346 -26.135 27.767 Atomic orbital electron populations 1.22250 0.95104 1.02460 1.02627 1.21052 0.94044 0.96657 0.82856 0.90034 1.44775 1.72672 1.12394 1.06330 1.17398 0.90627 0.91352 0.85363 1.20761 1.12714 0.92964 0.99523 1.20962 0.93170 1.00109 0.90864 1.21211 1.13550 0.94118 1.01509 1.19167 0.92030 0.91778 0.86503 1.86052 1.80361 1.41157 1.18136 1.22832 1.00153 0.94280 0.81498 1.18978 0.95163 0.95138 0.91660 1.21426 1.44994 0.97252 0.94540 0.91131 1.26067 0.94388 0.96254 1.03144 1.70128 1.44737 1.13022 1.29196 0.85215 0.77989 0.78933 0.77781 1.18115 1.20183 1.20192 1.19780 1.16125 1.00915 0.90935 1.24490 0.96555 1.01370 0.94879 1.23668 0.95910 1.02117 0.89199 1.65051 1.10828 1.35674 1.18935 1.23672 0.91963 1.02197 0.91897 0.89926 0.92577 0.93173 0.76301 0.83808 0.83400 0.86176 0.92296 0.92306 0.98365 0.98374 0.92437 0.86104 0.88028 0.89230 0.90849 0.84116 0.89266 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.23 71.98 0.66 -1.17 16 2 C 0.16 1.91 2.11 44.99 0.09 2.00 16 3 H 0.08 1.04 6.28 -2.39 -0.01 1.02 16 4 N -0.73 -12.54 5.25 -318.99 -1.67 -14.22 16 5 C 0.26 6.31 6.63 38.20 0.25 6.56 16 6 C -0.24 -5.38 8.84 22.42 0.20 -5.19 16 7 C -0.03 -0.82 10.03 22.24 0.22 -0.60 16 8 C -0.28 -9.24 9.04 22.39 0.20 -9.04 16 9 C 0.15 5.65 6.68 22.49 0.15 5.80 16 10 O -0.34 -15.36 10.13 -92.40 -0.94 -16.30 16 11 C 0.09 3.98 4.68 71.98 0.34 4.31 16 12 C 0.03 1.56 5.34 29.85 0.16 1.72 16 13 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 14 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 17 Si 0.98 44.06 29.54 68.60 2.03 46.09 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 C -0.25 -8.03 9.83 22.49 0.22 -7.81 16 22 C -0.15 -1.38 3.48 -10.15 -0.04 -1.42 16 23 C 0.02 0.25 8.46 86.40 0.73 0.98 16 24 N -0.68 -7.71 8.56 -524.17 -4.48 -12.19 16 25 C 0.03 0.26 7.52 86.40 0.65 0.91 16 26 H 0.08 0.60 7.43 -2.39 -0.02 0.59 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.72 7.70 -2.38 -0.02 0.70 16 29 H 0.40 6.21 8.61 -92.71 -0.80 5.41 16 30 H 0.14 2.45 6.11 -2.91 -0.02 2.43 16 31 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.12 3.95 6.29 -2.91 -0.02 3.93 16 33 H 0.06 2.56 7.66 -2.39 -0.02 2.54 16 34 H 0.06 2.55 7.66 -2.39 -0.02 2.53 16 35 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.12 3.73 8.06 -2.91 -0.02 3.70 16 39 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.09 1.23 7.96 -2.39 -0.02 1.21 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.34 2.99 8.89 -89.70 -0.80 2.19 16 43 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.10 0.80 8.06 -2.39 -0.02 0.78 16 Total: -1.00 -69.01 358.19 -0.83 -69.84 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.59 Total: 17.48 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 4.54 Total: -33.58 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -5.87 Total: -83.53 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.94 Total: -16.30 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.01 -0.83 -69.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423024468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.347 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds