Wall clock time and date at job start Tue Mar 31 2020 07:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47192 * 2 1 4 4 C 1.50700 * 109.47024 * 240.00873 * 2 1 3 5 5 C 1.38240 * 119.99560 * 208.38293 * 4 2 1 6 6 C 1.38242 * 119.99637 * 179.78554 * 5 4 2 7 7 C 1.38234 * 120.00115 * 0.43766 * 6 5 4 8 8 C 1.38237 * 120.00079 * 359.81068 * 7 6 5 9 9 C 1.38231 * 120.00460 * 28.64496 * 4 2 1 10 10 N 1.46495 * 109.47008 * 120.00557 * 2 1 3 11 11 C 1.46491 * 120.00150 * 54.37980 * 10 2 1 12 12 C 1.34781 * 120.00032 * 234.37609 * 10 2 1 13 13 O 1.21279 * 119.99676 * 0.02562 * 12 10 2 14 14 C 1.50697 * 120.00373 * 179.97438 * 12 10 2 15 15 H 1.09002 * 109.46879 * 320.00919 * 14 12 10 16 16 N 1.46896 * 109.47360 * 200.00196 * 14 12 10 17 17 C 1.53007 * 109.46785 * 80.00042 * 14 12 10 18 18 C 1.53001 * 109.46967 * 185.00228 * 17 14 12 19 19 C 1.50703 * 109.47195 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99416 * 359.72034 * 19 18 17 21 21 C 1.37875 * 119.99867 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99467 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00248 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46736 * 90.00385 * 23 21 19 25 25 H 1.48496 * 109.47120 * 210.00289 * 23 21 19 26 26 H 1.48499 * 109.47393 * 330.00657 * 23 21 19 27 27 H 1.08999 * 109.46793 * 59.99634 * 1 2 3 28 28 H 1.09001 * 109.46792 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47277 * 299.99551 * 1 2 3 30 30 H 1.07993 * 120.00374 * 359.97438 * 5 4 2 31 31 H 1.07998 * 119.99965 * 180.26783 * 6 5 4 32 32 H 1.07993 * 120.00266 * 179.83652 * 7 6 5 33 33 H 1.07993 * 120.00486 * 180.02562 * 8 7 6 34 34 H 1.08002 * 119.99755 * 359.97438 * 9 4 2 35 35 H 1.09007 * 109.47357 * 274.33893 * 11 10 2 36 36 H 1.09003 * 109.47671 * 34.34144 * 11 10 2 37 37 H 1.09007 * 109.47481 * 154.34249 * 11 10 2 38 38 H 1.00900 * 111.00014 * 300.00279 * 16 14 12 39 39 H 1.00902 * 110.99801 * 63.95709 * 16 14 12 40 40 H 1.08994 * 109.46890 * 65.00353 * 17 14 12 41 41 H 1.08993 * 109.47285 * 305.00102 * 17 14 12 42 42 H 1.08997 * 109.46953 * 59.99865 * 18 17 14 43 43 H 1.09009 * 109.47000 * 300.00338 * 18 17 14 44 44 H 0.97008 * 119.99806 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 6 3.2558 -1.3534 -1.2064 6 6 3.7146 -2.0086 -2.3338 7 6 2.9541 -2.0131 -3.4882 8 6 1.7330 -1.3656 -3.5140 9 6 1.2723 -0.7140 -2.3852 10 7 2.0183 -0.6907 1.1961 11 6 1.5658 -2.0523 1.4917 12 6 2.8839 -0.0735 2.0245 13 8 3.2582 1.0539 1.7800 14 6 3.3858 -0.7837 3.2552 15 1 2.5681 -1.3417 3.7115 16 7 3.9007 0.2028 4.2142 17 6 4.5068 -1.7493 2.8652 18 6 4.9311 -2.5600 4.0915 19 6 6.0357 -3.5106 3.7075 20 1 6.3956 -3.5373 2.6896 21 6 6.5824 -4.3506 4.6544 22 7 7.5460 -5.1805 4.3191 23 14 5.9545 -4.3100 6.4132 24 1 4.8366 -5.2760 6.5620 25 1 7.0544 -4.6790 7.3401 26 1 5.4732 -2.9426 6.7355 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.8517 -1.3465 -0.3058 31 1 4.6684 -2.5148 -2.3136 32 1 3.3137 -2.5227 -4.3698 33 1 1.1386 -1.3694 -4.4156 34 1 0.3182 -0.2083 -2.4052 35 1 0.6244 -2.0114 2.0397 36 1 1.4200 -2.5973 0.5590 37 1 2.3164 -2.5614 2.0964 38 1 4.6602 0.7333 3.8145 39 1 3.1641 0.8123 4.5365 40 1 5.3598 -1.1834 2.4909 41 1 4.1501 -2.4254 2.0884 42 1 4.0781 -3.1258 4.4658 43 1 5.2879 -1.8838 4.8685 44 1 7.9309 -5.7713 4.9854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424064994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:39 Heat of formation + Delta-G solvation = -14.270259 kcal Electronic energy + Delta-G solvation = -23561.425750 eV Core-core repulsion = 20285.369647 eV Total energy + Delta-G solvation = -3276.056103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56971 -39.09444 -36.25098 -35.43321 -32.85561 -32.54064 -30.95720 -30.50924 -29.30086 -26.99558 -26.84258 -24.51851 -23.03399 -22.41654 -20.81413 -20.07533 -19.05078 -17.39336 -17.29190 -16.74054 -16.09593 -15.59065 -15.29916 -15.08430 -14.72301 -14.18381 -14.13737 -13.82506 -13.49240 -13.35618 -13.10559 -13.03357 -12.59802 -12.48189 -12.38412 -12.25261 -12.04938 -11.72052 -11.65755 -11.07376 -11.04785 -10.95593 -10.87267 -10.34963 -9.92956 -9.76055 -9.58579 -9.11734 -8.99372 -8.88043 -8.71245 -8.50440 -8.37974 -5.99927 -3.97604 1.22873 1.32715 2.65409 2.97225 3.35495 3.43697 3.51632 3.71963 4.45377 4.51163 4.63411 4.74409 4.88791 4.90526 4.97426 5.06375 5.12056 5.18391 5.31467 5.33918 5.38012 5.44402 5.47765 5.49337 5.65718 5.73764 5.75159 5.84996 5.93659 5.95755 6.23166 6.33072 6.39072 6.45356 6.47432 6.63290 6.85154 6.91359 7.21658 7.34428 7.41034 7.57870 7.66137 7.85891 8.18722 8.57199 9.04603 9.63167 11.13521 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.004284 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.822908 B = 6534.474785 C = 7535.064739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.109 0.891 4 C -0.096 4.096 5 C -0.099 4.099 6 C -0.116 4.116 7 C -0.123 4.123 8 C -0.123 4.123 9 C -0.118 4.118 10 N -0.606 5.606 11 C 0.067 3.933 12 C 0.485 3.515 13 O -0.551 6.551 14 C 0.075 3.925 15 H 0.099 0.901 16 N -0.811 5.811 17 C -0.089 4.089 18 C -0.004 4.004 19 C -0.521 4.521 20 H 0.069 0.931 21 C 0.067 3.933 22 N -0.906 5.906 23 Si 0.878 3.122 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.260 1.260 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.349 0.651 39 H 0.335 0.665 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.008 0.992 43 H 0.034 0.966 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 8.585 -12.075 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.126 0.874 4 C -0.097 4.097 5 C -0.117 4.117 6 C -0.134 4.134 7 C -0.141 4.141 8 C -0.141 4.141 9 C -0.136 4.136 10 N -0.340 5.340 11 C -0.075 4.075 12 C 0.272 3.728 13 O -0.429 6.429 14 C -0.041 4.041 15 H 0.116 0.884 16 N -0.339 5.339 17 C -0.128 4.128 18 C -0.041 4.041 19 C -0.559 4.559 20 H 0.087 0.913 21 C -0.134 4.134 22 N -0.545 5.545 23 Si 0.706 3.294 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.184 1.184 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.164 0.836 39 H 0.147 0.853 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.026 0.974 43 H 0.052 0.948 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.028 8.417 -11.638 21.522 hybrid contribution -0.567 0.431 0.059 0.715 sum -16.595 8.848 -11.579 22.085 Atomic orbital electron populations 1.22153 0.94157 1.02747 1.02447 1.19858 0.93975 0.97284 0.81981 0.87363 1.20182 0.95204 0.99121 0.95219 1.21090 0.95348 0.96630 0.98655 1.21243 1.00046 0.99098 0.92994 1.21173 0.95034 0.99723 0.98134 1.21096 0.96473 0.98430 0.98133 1.21033 0.99723 1.00185 0.92648 1.48000 1.45721 1.16278 1.23954 1.21981 1.00792 0.82406 1.02349 1.22694 0.77314 0.86861 0.85886 1.90642 1.57831 1.19445 1.74965 1.21888 0.99662 0.94716 0.87840 0.88352 1.59042 1.13620 1.22034 1.39183 1.21527 0.94854 0.95738 1.00644 1.19485 0.96168 0.94857 0.93602 1.21163 1.17983 1.18930 0.97814 0.91327 1.25003 0.94639 0.94978 0.98802 1.69925 1.26385 1.23695 1.34528 0.86789 0.78441 0.79215 0.85003 1.20503 1.21610 1.18402 0.91173 0.91804 0.91975 0.85973 0.85789 0.86219 0.86229 0.85875 0.92549 0.91049 0.89135 0.83640 0.85340 0.92178 0.92043 0.97388 0.94753 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.37 37.16 0.31 -1.04 16 2 C 0.17 2.00 3.05 -69.08 -0.21 1.78 16 3 H 0.11 1.46 6.92 -51.93 -0.36 1.10 16 4 C -0.10 -1.13 4.86 -104.62 -0.51 -1.64 16 5 C -0.10 -1.31 8.92 -39.58 -0.35 -1.66 16 6 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 7 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 8 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 9 C -0.12 -1.17 9.14 -39.58 -0.36 -1.53 16 10 N -0.61 -7.63 1.81 -175.26 -0.32 -7.95 16 11 C 0.07 0.74 8.53 59.84 0.51 1.25 16 12 C 0.48 7.39 6.74 -10.98 -0.07 7.31 16 13 O -0.55 -9.84 15.59 5.56 0.09 -9.76 16 14 C 0.07 1.17 2.30 -68.86 -0.16 1.01 16 15 H 0.10 1.43 7.14 -51.93 -0.37 1.05 16 16 N -0.81 -12.76 8.44 -5.65 -0.05 -12.80 16 17 C -0.09 -1.70 4.43 -26.73 -0.12 -1.82 16 18 C 0.00 -0.09 3.93 -27.88 -0.11 -0.19 16 19 C -0.52 -14.66 9.66 -34.44 -0.33 -15.00 16 20 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 21 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 22 N -0.91 -27.98 13.96 55.43 0.77 -27.21 16 23 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 27 H 0.07 0.49 6.52 -51.93 -0.34 0.15 16 28 H 0.06 0.52 7.55 -51.93 -0.39 0.13 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.12 1.82 7.30 -52.49 -0.38 1.44 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.12 0.95 6.13 -52.49 -0.32 0.63 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.07 0.74 7.38 -51.93 -0.38 0.36 16 37 H 0.09 1.10 4.73 -51.93 -0.25 0.86 16 38 H 0.35 5.65 8.58 -39.29 -0.34 5.31 16 39 H 0.33 4.54 9.06 -39.29 -0.36 4.19 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.11 6.53 -51.93 -0.34 0.77 16 42 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 43 H 0.03 0.83 6.81 -51.92 -0.35 0.48 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -32.64 350.67 -8.28 -40.92 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.70 Total: 9.13 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.70 Total: -14.73 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.41 Total: -47.96 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.64 -8.28 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424064994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.649 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds