Wall clock time and date at job start Tue Mar 31 2020 07:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47192 * 2 1 4 4 C 1.50700 * 109.47024 * 240.00873 * 2 1 3 5 5 C 1.38240 * 119.99560 * 208.38293 * 4 2 1 6 6 C 1.38242 * 119.99637 * 179.78554 * 5 4 2 7 7 C 1.38234 * 120.00115 * 0.43766 * 6 5 4 8 8 C 1.38237 * 120.00079 * 359.81068 * 7 6 5 9 9 C 1.38231 * 120.00460 * 28.64496 * 4 2 1 10 10 N 1.46495 * 109.47008 * 120.00557 * 2 1 3 11 11 C 1.46491 * 120.00150 * 54.37980 * 10 2 1 12 12 C 1.34781 * 120.00032 * 234.37609 * 10 2 1 13 13 O 1.21279 * 119.99676 * 0.02562 * 12 10 2 14 14 C 1.50697 * 120.00373 * 179.97438 * 12 10 2 15 15 H 1.09002 * 109.46879 * 320.00919 * 14 12 10 16 16 N 1.46896 * 109.47360 * 200.00196 * 14 12 10 17 17 C 1.53007 * 109.46785 * 80.00042 * 14 12 10 18 18 C 1.53001 * 109.46967 * 185.00228 * 17 14 12 19 19 C 1.50703 * 109.47195 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99416 * 359.72034 * 19 18 17 21 21 C 1.37875 * 119.99867 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99467 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00248 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46736 * 90.00385 * 23 21 19 25 25 H 1.48496 * 109.47120 * 210.00289 * 23 21 19 26 26 H 1.48499 * 109.47393 * 330.00657 * 23 21 19 27 27 H 1.08999 * 109.46793 * 59.99634 * 1 2 3 28 28 H 1.09001 * 109.46792 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47277 * 299.99551 * 1 2 3 30 30 H 1.07993 * 120.00374 * 359.97438 * 5 4 2 31 31 H 1.07998 * 119.99965 * 180.26783 * 6 5 4 32 32 H 1.07993 * 120.00266 * 179.83652 * 7 6 5 33 33 H 1.07993 * 120.00486 * 180.02562 * 8 7 6 34 34 H 1.08002 * 119.99755 * 359.97438 * 9 4 2 35 35 H 1.09007 * 109.47357 * 274.33893 * 11 10 2 36 36 H 1.09003 * 109.47671 * 34.34144 * 11 10 2 37 37 H 1.09007 * 109.47481 * 154.34249 * 11 10 2 38 38 H 1.00900 * 111.00014 * 300.00279 * 16 14 12 39 39 H 1.00902 * 110.99801 * 63.95709 * 16 14 12 40 40 H 1.08994 * 109.46890 * 65.00353 * 17 14 12 41 41 H 1.08993 * 109.47285 * 305.00102 * 17 14 12 42 42 H 1.08997 * 109.46953 * 59.99865 * 18 17 14 43 43 H 1.09009 * 109.47000 * 300.00338 * 18 17 14 44 44 H 0.97008 * 119.99806 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 6 3.2558 -1.3534 -1.2064 6 6 3.7146 -2.0086 -2.3338 7 6 2.9541 -2.0131 -3.4882 8 6 1.7330 -1.3656 -3.5140 9 6 1.2723 -0.7140 -2.3852 10 7 2.0183 -0.6907 1.1961 11 6 1.5658 -2.0523 1.4917 12 6 2.8839 -0.0735 2.0245 13 8 3.2582 1.0539 1.7800 14 6 3.3858 -0.7837 3.2552 15 1 2.5681 -1.3417 3.7115 16 7 3.9007 0.2028 4.2142 17 6 4.5068 -1.7493 2.8652 18 6 4.9311 -2.5600 4.0915 19 6 6.0357 -3.5106 3.7075 20 1 6.3956 -3.5373 2.6896 21 6 6.5824 -4.3506 4.6544 22 7 7.5460 -5.1805 4.3191 23 14 5.9545 -4.3100 6.4132 24 1 4.8366 -5.2760 6.5620 25 1 7.0544 -4.6790 7.3401 26 1 5.4732 -2.9426 6.7355 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.8517 -1.3465 -0.3058 31 1 4.6684 -2.5148 -2.3136 32 1 3.3137 -2.5227 -4.3698 33 1 1.1386 -1.3694 -4.4156 34 1 0.3182 -0.2083 -2.4052 35 1 0.6244 -2.0114 2.0397 36 1 1.4200 -2.5973 0.5590 37 1 2.3164 -2.5614 2.0964 38 1 4.6602 0.7333 3.8145 39 1 3.1641 0.8123 4.5365 40 1 5.3598 -1.1834 2.4909 41 1 4.1501 -2.4254 2.0884 42 1 4.0781 -3.1258 4.4658 43 1 5.2879 -1.8838 4.8685 44 1 7.9309 -5.7713 4.9854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424064994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:38 Heat of formation + Delta-G solvation = -35.113330 kcal Electronic energy + Delta-G solvation = -23562.329574 eV Core-core repulsion = 20285.369647 eV Total energy + Delta-G solvation = -3276.959927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64967 -40.06797 -37.29923 -36.89749 -34.82831 -33.52986 -32.31293 -31.80762 -30.12890 -28.43300 -27.94491 -25.84053 -24.26587 -23.29986 -22.21824 -21.44312 -20.16568 -18.91836 -18.47934 -18.18585 -17.19909 -16.92657 -16.33052 -16.24379 -15.95276 -15.65395 -15.37057 -14.80320 -14.70146 -14.62543 -14.32615 -14.17791 -13.91005 -13.85629 -13.50460 -13.29440 -13.24240 -12.78839 -12.74198 -12.54379 -12.50067 -11.99610 -11.89001 -11.86237 -11.74674 -11.59369 -11.27978 -11.11652 -10.70961 -9.85485 -9.84808 -9.70584 -9.58933 -8.24967 -6.28371 0.37343 0.46429 1.39792 1.43107 1.44197 1.57562 1.95508 2.41772 2.85898 3.11724 3.40738 3.60141 3.71817 3.91839 4.03262 4.10186 4.18527 4.21919 4.23151 4.24701 4.32448 4.55024 4.61873 4.63748 4.66529 4.73213 4.78165 4.88862 4.96319 5.05372 5.11463 5.13046 5.21735 5.39036 5.48135 5.55505 5.61030 5.63580 5.71626 5.73264 6.02091 6.08093 6.27628 6.32047 6.47752 6.79774 7.02271 7.36242 8.91978 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.004284 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.822908 B = 6534.474785 C = 7535.064739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.171 3.829 3 H 0.086 0.914 4 C -0.104 4.104 5 C -0.124 4.124 6 C -0.135 4.135 7 C -0.125 4.125 8 C -0.119 4.119 9 C -0.113 4.113 10 N -0.598 5.598 11 C 0.065 3.935 12 C 0.485 3.515 13 O -0.583 6.583 14 C 0.085 3.915 15 H 0.120 0.880 16 N -0.818 5.818 17 C -0.078 4.078 18 C 0.005 3.995 19 C -0.531 4.531 20 H 0.026 0.974 21 C 0.004 3.996 22 N -0.955 5.955 23 Si 0.951 3.049 24 H -0.263 1.263 25 H -0.289 1.289 26 H -0.245 1.245 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.345 0.655 39 H 0.349 0.651 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.023 0.977 43 H 0.029 0.971 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.048 8.992 -12.199 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.067 3.933 3 H 0.104 0.896 4 C -0.105 4.105 5 C -0.143 4.143 6 C -0.153 4.153 7 C -0.143 4.143 8 C -0.137 4.137 9 C -0.131 4.131 10 N -0.330 5.330 11 C -0.077 4.077 12 C 0.273 3.727 13 O -0.463 6.463 14 C -0.031 4.031 15 H 0.137 0.863 16 N -0.347 5.347 17 C -0.117 4.117 18 C -0.033 4.033 19 C -0.569 4.569 20 H 0.045 0.955 21 C -0.192 4.192 22 N -0.596 5.596 23 Si 0.774 3.226 24 H -0.188 1.188 25 H -0.215 1.215 26 H -0.168 1.168 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.137 0.863 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.573 8.817 -11.782 24.488 hybrid contribution 0.570 0.275 -0.067 0.637 sum -19.003 9.092 -11.849 24.170 Atomic orbital electron populations 1.22118 0.91221 1.03738 1.03561 1.19972 0.96103 0.95824 0.81351 0.89649 1.20239 0.94869 0.99211 0.96172 1.20980 0.96320 0.98813 0.98170 1.21340 1.00536 0.99728 0.93722 1.21462 0.95253 0.99611 0.97950 1.21514 0.96088 0.96950 0.99129 1.21364 1.00402 0.99601 0.91748 1.48019 1.44605 1.16714 1.23634 1.22101 1.01475 0.81237 1.02887 1.22473 0.77700 0.86487 0.86085 1.90626 1.59162 1.20832 1.75702 1.21681 0.98686 0.94252 0.88468 0.86277 1.59035 1.14160 1.22374 1.39082 1.21284 0.95444 0.95932 0.99004 1.19354 0.94835 0.94119 0.94977 1.21524 1.19262 1.19956 0.96117 0.95522 1.25991 0.94783 0.94466 1.03950 1.70086 1.28188 1.24984 1.36338 0.85644 0.78166 0.80206 0.78580 1.18762 1.21542 1.16821 0.89052 0.90753 0.91936 0.88983 0.86317 0.84111 0.82995 0.82980 0.89699 0.90396 0.90554 0.84177 0.83773 0.94494 0.91713 0.95841 0.95265 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.37 71.98 0.60 -1.51 16 2 C 0.17 3.77 3.05 44.25 0.13 3.90 16 3 H 0.09 2.30 6.92 -2.39 -0.02 2.29 16 4 C -0.10 -2.35 4.86 -19.87 -0.10 -2.44 16 5 C -0.12 -3.42 8.92 22.27 0.20 -3.22 16 6 C -0.14 -3.35 10.05 22.27 0.22 -3.12 16 7 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 8 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 9 C -0.11 -1.92 9.14 22.27 0.20 -1.72 16 10 N -0.60 -14.67 1.81 -826.80 -1.50 -16.17 16 11 C 0.06 1.32 8.53 127.77 1.09 2.41 16 12 C 0.49 14.80 6.74 87.66 0.59 15.39 16 13 O -0.58 -21.24 15.59 -3.03 -0.05 -21.29 16 14 C 0.08 2.62 2.30 44.17 0.10 2.72 16 15 H 0.12 3.19 7.14 -2.39 -0.02 3.18 16 16 N -0.82 -25.16 8.44 -171.80 -1.45 -26.61 16 17 C -0.08 -3.05 4.43 30.60 0.14 -2.91 16 18 C 0.00 0.21 3.93 29.85 0.12 0.33 16 19 C -0.53 -30.81 9.66 25.60 0.25 -30.56 16 20 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 21 C 0.00 0.26 5.47 84.65 0.46 0.72 16 22 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 23 Si 0.95 44.70 27.47 68.60 1.88 46.58 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 26 H -0.24 -10.85 6.54 99.48 0.65 -10.20 16 27 H 0.09 0.92 6.52 -2.39 -0.02 0.90 16 28 H 0.07 0.93 7.55 -2.39 -0.02 0.91 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 3.01 7.30 -2.91 -0.02 2.99 16 31 H 0.12 2.90 8.06 -2.91 -0.02 2.87 16 32 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.15 1.67 6.13 -2.91 -0.02 1.65 16 35 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.08 1.50 7.38 -2.39 -0.02 1.48 16 37 H 0.08 1.78 4.73 -2.38 -0.01 1.77 16 38 H 0.34 11.25 8.58 -89.69 -0.77 10.48 16 39 H 0.35 9.02 9.06 -89.69 -0.81 8.20 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 2.44 6.53 -2.39 -0.02 2.43 16 42 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 43 H 0.03 1.39 6.81 -2.38 -0.02 1.37 16 44 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -73.37 350.67 3.02 -70.35 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -0.63 Total: 31.38 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 4.46 Total: -23.88 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -2.65 Total: -103.15 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.05 Total: -21.29 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -73.37 3.02 -70.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424064994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.238 kcal (2) G-P(sol) polarization free energy of solvation -73.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds