Wall clock time and date at job start Tue Mar 31 2020 07:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46892 * 2 1 4 4 N 1.46500 * 109.47363 * 119.99874 * 2 1 3 5 5 C 1.34777 * 120.00006 * 275.00114 * 4 2 1 6 6 O 1.21583 * 119.99910 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99870 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99756 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46840 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00219 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99744 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00206 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00339 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47298 * 89.99397 * 13 11 9 15 15 H 1.48499 * 109.47670 * 209.99877 * 13 11 9 16 16 H 1.48500 * 109.46967 * 329.99775 * 13 11 9 17 17 C 1.53003 * 109.47078 * 240.00217 * 2 1 3 18 18 C 1.52998 * 109.47059 * 55.88276 * 17 2 1 19 19 C 1.53007 * 109.46508 * 295.88423 * 17 2 1 20 20 C 1.50696 * 109.47125 * 175.88648 * 17 2 1 21 21 C 1.38231 * 119.99829 * 173.87345 * 20 17 2 22 22 C 1.38240 * 119.99818 * 180.02562 * 21 20 17 23 23 C 1.38229 * 120.00138 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99783 * 0.25599 * 23 22 21 25 25 C 1.38229 * 120.00331 * 359.48912 * 24 23 22 26 26 H 1.08998 * 109.47224 * 174.56987 * 1 2 3 27 27 H 1.09007 * 109.46924 * 294.56687 * 1 2 3 28 28 H 1.08996 * 109.47240 * 54.56914 * 1 2 3 29 29 H 0.96999 * 119.99776 * 94.99623 * 4 2 1 30 30 H 0.96999 * 119.99913 * 359.97438 * 7 5 4 31 31 H 1.08999 * 109.47325 * 299.99610 * 8 7 5 32 32 H 1.09000 * 109.47577 * 60.00140 * 8 7 5 33 33 H 0.96990 * 120.00210 * 180.02562 * 12 11 9 34 34 H 1.08998 * 109.46874 * 180.02562 * 18 17 2 35 35 H 1.09006 * 109.46860 * 299.99843 * 18 17 2 36 36 H 1.08988 * 109.47474 * 60.00360 * 18 17 2 37 37 H 1.09000 * 109.47149 * 299.99618 * 19 17 2 38 38 H 1.09000 * 109.47240 * 60.00259 * 19 17 2 39 39 H 1.08998 * 109.46631 * 180.02562 * 19 17 2 40 40 H 1.08003 * 120.00324 * 359.97438 * 21 20 17 41 41 H 1.08005 * 120.00006 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.00249 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99641 * 179.72296 * 24 23 22 44 44 H 1.07994 * 120.00377 * 180.23314 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8584 1.1616 2.4116 7 7 2.5969 -0.6534 3.4574 8 6 2.7374 0.0776 4.7192 9 6 3.2538 -0.8544 5.7849 10 1 3.4575 -1.8878 5.5460 11 6 3.4673 -0.3876 7.0645 12 7 3.9185 -1.2008 7.9945 13 14 3.1158 1.3999 7.4775 14 1 1.7078 1.5359 7.9294 15 1 4.0285 1.8466 8.5604 16 1 3.3315 2.2383 6.2710 17 6 2.0400 -0.7212 -1.2493 18 6 1.4472 -0.0622 -2.4963 19 6 1.6162 -2.1905 -1.1985 20 6 3.5435 -0.6336 -1.3013 21 6 4.2427 -1.3218 -2.2751 22 6 5.6219 -1.2418 -2.3225 23 6 6.3019 -0.4732 -1.3965 24 6 5.6030 0.2112 -0.4197 25 6 4.2235 0.1355 -0.3755 26 1 -0.3633 -1.0230 -0.0972 27 1 -0.3633 0.4273 0.9347 28 1 -0.3633 0.5957 -0.8373 29 1 2.2491 -1.6317 1.1526 30 1 2.8276 -1.5945 3.4138 31 1 3.4384 0.9015 4.5857 32 1 1.7669 0.4716 5.0209 33 1 4.0684 -0.8725 8.8948 34 1 1.8102 -0.5763 -3.3863 35 1 0.3596 -0.1257 -2.4586 36 1 1.7490 0.9844 -2.5325 37 1 2.0386 -2.6600 -0.3101 38 1 0.5287 -2.2539 -1.1609 39 1 1.9799 -2.7045 -2.0883 40 1 3.7114 -1.9227 -2.9985 41 1 6.1683 -1.7799 -3.0832 42 1 7.3795 -0.4111 -1.4332 43 1 6.1347 0.8081 0.3066 44 1 3.6773 0.6732 0.3853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426416354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:16 Heat of formation + Delta-G solvation = -12.111071 kcal Electronic energy + Delta-G solvation = -23667.168915 eV Core-core repulsion = 20391.206441 eV Total energy + Delta-G solvation = -3275.962474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.60398 -38.93628 -37.11311 -34.23184 -33.33081 -32.27837 -30.87933 -30.61212 -28.95011 -27.75380 -27.18525 -24.66830 -22.58953 -22.27296 -21.50014 -20.21011 -19.05984 -18.24362 -17.10703 -16.31509 -16.13157 -15.19980 -15.04774 -14.81253 -14.50091 -14.28834 -14.05797 -13.71992 -13.54767 -13.41943 -13.02444 -12.88309 -12.45547 -12.42319 -12.31825 -12.20640 -12.04617 -11.70472 -11.43883 -11.32292 -11.18858 -10.94511 -10.75123 -10.64176 -10.34377 -9.93886 -9.53704 -9.41626 -8.94935 -8.79021 -8.73243 -8.64685 -7.96075 -6.18071 -4.19618 1.35010 1.42573 3.27955 3.31506 3.38390 3.45431 3.78834 3.85249 4.36763 4.40869 4.45915 4.89088 4.96965 4.98346 5.01332 5.03819 5.16180 5.17621 5.31403 5.36938 5.46383 5.48063 5.57747 5.65058 5.69150 5.74463 5.82956 5.90417 5.96525 6.02704 6.07714 6.15565 6.35087 6.47863 6.57788 6.66029 6.78892 6.88772 7.01979 7.15458 7.29190 7.45854 7.63451 8.32132 8.73653 8.86030 9.26595 9.44213 10.94019 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.004199 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.316756 B = 6666.158763 C = 7459.994963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.171 3.829 3 H 0.089 0.911 4 N -0.748 5.748 5 C 0.695 3.305 6 O -0.605 6.605 7 N -0.723 5.723 8 C 0.239 3.761 9 C -0.541 4.541 10 H 0.078 0.922 11 C 0.077 3.923 12 N -0.894 5.894 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.260 1.260 17 C -0.031 4.031 18 C -0.137 4.137 19 C -0.142 4.142 20 C -0.072 4.072 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.117 4.117 25 C -0.108 4.108 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.392 0.608 30 H 0.391 0.609 31 H 0.022 0.978 32 H 0.018 0.982 33 H 0.267 0.733 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 -1.461 -23.516 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.065 3.935 3 H 0.107 0.893 4 N -0.406 5.406 5 C 0.395 3.605 6 O -0.485 6.485 7 N -0.375 5.375 8 C 0.117 3.883 9 C -0.579 4.579 10 H 0.096 0.904 11 C -0.126 4.126 12 N -0.532 5.532 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.185 1.185 17 C -0.032 4.032 18 C -0.195 4.195 19 C -0.200 4.200 20 C -0.072 4.072 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.135 4.135 25 C -0.126 4.126 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.227 0.773 30 H 0.224 0.776 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.990 -0.368 -23.207 23.295 hybrid contribution 0.209 -0.095 0.440 0.497 sum -1.781 -0.463 -22.766 22.840 Atomic orbital electron populations 1.22319 0.95625 1.01922 1.02630 1.20676 0.93551 0.96945 0.82344 0.89324 1.45348 1.72769 1.13571 1.08918 1.16120 0.78740 0.85229 0.80439 1.90859 1.58174 1.14612 1.84840 1.45395 1.68705 1.13781 1.09629 1.19332 0.96321 0.92815 0.79879 1.21104 1.45473 0.97878 0.93433 0.90352 1.24778 0.94059 0.97913 0.95860 1.69883 1.44818 1.35526 1.02931 0.86816 0.78705 0.85309 0.78848 1.19888 1.20979 1.18452 1.19786 0.91237 0.96567 0.95588 1.21902 1.00961 1.00832 0.95774 1.21967 1.01728 0.94169 1.02094 1.19724 0.94425 0.97423 0.95656 1.20910 0.94048 0.99938 0.98594 1.21060 0.94355 0.99617 0.99279 1.21139 0.99721 0.97788 0.95629 1.21231 0.94513 0.99427 0.98289 1.21434 0.94382 0.98339 0.98422 0.92362 0.91727 0.91835 0.77320 0.77567 0.96003 0.96457 0.92320 0.92206 0.91574 0.92203 0.92380 0.91561 0.92162 0.86433 0.86485 0.86458 0.86169 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 8.70 37.16 0.32 -1.58 16 2 C 0.17 2.12 1.15 -67.93 -0.08 2.04 16 3 H 0.09 1.30 6.38 -51.93 -0.33 0.97 16 4 N -0.75 -10.70 3.62 -58.67 -0.21 -10.91 16 5 C 0.69 13.52 7.76 -86.92 -0.67 12.84 16 6 O -0.61 -14.01 16.00 5.29 0.08 -13.93 16 7 N -0.72 -15.01 5.55 -66.41 -0.37 -15.38 16 8 C 0.24 6.00 4.50 -5.19 -0.02 5.98 16 9 C -0.54 -15.02 9.83 -34.44 -0.34 -15.36 16 10 H 0.08 2.27 7.84 -52.49 -0.41 1.85 16 11 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 12 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 13 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 17 C -0.03 -0.30 0.45 -155.66 -0.07 -0.37 16 18 C -0.14 -1.11 7.88 37.16 0.29 -0.82 16 19 C -0.14 -1.19 7.74 37.16 0.29 -0.90 16 20 C -0.07 -0.81 4.63 -104.62 -0.48 -1.29 16 21 C -0.12 -1.17 8.77 -39.58 -0.35 -1.52 16 22 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 23 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 24 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 25 C -0.11 -1.44 8.49 -39.58 -0.34 -1.78 16 26 H 0.06 0.58 6.29 -51.93 -0.33 0.26 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.60 6.68 -51.93 -0.35 0.26 16 29 H 0.39 4.87 6.64 -40.82 -0.27 4.60 16 30 H 0.39 7.26 8.34 -40.82 -0.34 6.92 16 31 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 32 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.06 0.43 7.78 -51.93 -0.40 0.02 16 35 H 0.07 0.47 6.48 -51.93 -0.34 0.14 16 36 H 0.06 0.52 8.14 -51.94 -0.42 0.10 16 37 H 0.06 0.52 6.33 -51.93 -0.33 0.19 16 38 H 0.07 0.51 6.42 -51.93 -0.33 0.17 16 39 H 0.06 0.44 7.07 -51.93 -0.37 0.07 16 40 H 0.12 0.94 7.11 -52.48 -0.37 0.57 16 41 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 44 H 0.13 2.06 4.75 -52.49 -0.25 1.81 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -32.32 344.50 -8.41 -40.73 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.47 Total: 9.23 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.74 Total: -5.98 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.19 Total: -52.30 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.08 Total: -13.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.32 -8.41 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.620 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds