Wall clock time and date at job start Tue Mar 31 2020 07:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46892 * 2 1 4 4 N 1.46500 * 109.47363 * 119.99874 * 2 1 3 5 5 C 1.34777 * 120.00006 * 275.00114 * 4 2 1 6 6 O 1.21583 * 119.99910 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99870 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99756 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46840 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00219 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99744 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00206 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00339 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47298 * 89.99397 * 13 11 9 15 15 H 1.48499 * 109.47670 * 209.99877 * 13 11 9 16 16 H 1.48500 * 109.46967 * 329.99775 * 13 11 9 17 17 C 1.53003 * 109.47078 * 240.00217 * 2 1 3 18 18 C 1.52998 * 109.47059 * 55.88276 * 17 2 1 19 19 C 1.53007 * 109.46508 * 295.88423 * 17 2 1 20 20 C 1.50696 * 109.47125 * 175.88648 * 17 2 1 21 21 C 1.38231 * 119.99829 * 173.87345 * 20 17 2 22 22 C 1.38240 * 119.99818 * 180.02562 * 21 20 17 23 23 C 1.38229 * 120.00138 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99783 * 0.25599 * 23 22 21 25 25 C 1.38229 * 120.00331 * 359.48912 * 24 23 22 26 26 H 1.08998 * 109.47224 * 174.56987 * 1 2 3 27 27 H 1.09007 * 109.46924 * 294.56687 * 1 2 3 28 28 H 1.08996 * 109.47240 * 54.56914 * 1 2 3 29 29 H 0.96999 * 119.99776 * 94.99623 * 4 2 1 30 30 H 0.96999 * 119.99913 * 359.97438 * 7 5 4 31 31 H 1.08999 * 109.47325 * 299.99610 * 8 7 5 32 32 H 1.09000 * 109.47577 * 60.00140 * 8 7 5 33 33 H 0.96990 * 120.00210 * 180.02562 * 12 11 9 34 34 H 1.08998 * 109.46874 * 180.02562 * 18 17 2 35 35 H 1.09006 * 109.46860 * 299.99843 * 18 17 2 36 36 H 1.08988 * 109.47474 * 60.00360 * 18 17 2 37 37 H 1.09000 * 109.47149 * 299.99618 * 19 17 2 38 38 H 1.09000 * 109.47240 * 60.00259 * 19 17 2 39 39 H 1.08998 * 109.46631 * 180.02562 * 19 17 2 40 40 H 1.08003 * 120.00324 * 359.97438 * 21 20 17 41 41 H 1.08005 * 120.00006 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.00249 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99641 * 179.72296 * 24 23 22 44 44 H 1.07994 * 120.00377 * 180.23314 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8584 1.1616 2.4116 7 7 2.5969 -0.6534 3.4574 8 6 2.7374 0.0776 4.7192 9 6 3.2538 -0.8544 5.7849 10 1 3.4575 -1.8878 5.5460 11 6 3.4673 -0.3876 7.0645 12 7 3.9185 -1.2008 7.9945 13 14 3.1158 1.3999 7.4775 14 1 1.7078 1.5359 7.9294 15 1 4.0285 1.8466 8.5604 16 1 3.3315 2.2383 6.2710 17 6 2.0400 -0.7212 -1.2493 18 6 1.4472 -0.0622 -2.4963 19 6 1.6162 -2.1905 -1.1985 20 6 3.5435 -0.6336 -1.3013 21 6 4.2427 -1.3218 -2.2751 22 6 5.6219 -1.2418 -2.3225 23 6 6.3019 -0.4732 -1.3965 24 6 5.6030 0.2112 -0.4197 25 6 4.2235 0.1355 -0.3755 26 1 -0.3633 -1.0230 -0.0972 27 1 -0.3633 0.4273 0.9347 28 1 -0.3633 0.5957 -0.8373 29 1 2.2491 -1.6317 1.1526 30 1 2.8276 -1.5945 3.4138 31 1 3.4384 0.9015 4.5857 32 1 1.7669 0.4716 5.0209 33 1 4.0684 -0.8725 8.8948 34 1 1.8102 -0.5763 -3.3863 35 1 0.3596 -0.1257 -2.4586 36 1 1.7490 0.9844 -2.5325 37 1 2.0386 -2.6600 -0.3101 38 1 0.5287 -2.2539 -1.1609 39 1 1.9799 -2.7045 -2.0883 40 1 3.7114 -1.9227 -2.9985 41 1 6.1683 -1.7799 -3.0832 42 1 7.3795 -0.4111 -1.4332 43 1 6.1347 0.8081 0.3066 44 1 3.6773 0.6732 0.3853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426416354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:57 Heat of formation + Delta-G solvation = -32.876487 kcal Electronic energy + Delta-G solvation = -23668.069371 eV Core-core repulsion = 20391.206441 eV Total energy + Delta-G solvation = -3276.862930 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 6.07 seconds Orbital eigenvalues (eV) -41.69468 -40.25767 -38.13829 -36.11465 -34.67716 -34.23427 -31.79203 -31.62612 -30.11000 -29.25222 -28.04631 -25.67915 -24.12124 -23.38206 -22.66085 -21.78084 -20.20261 -19.68523 -18.43402 -17.90411 -17.43605 -16.53876 -16.32933 -16.04864 -15.98799 -15.46404 -15.22086 -15.00413 -14.60066 -14.50380 -14.37778 -14.16219 -14.11501 -13.65976 -13.25330 -13.19448 -13.01465 -12.96721 -12.71113 -12.50557 -12.27199 -12.12092 -11.98931 -11.93549 -11.65757 -11.48027 -11.26417 -11.20683 -10.91945 -10.26185 -9.80075 -9.63004 -9.52441 -8.40262 -6.46833 0.49353 0.53703 1.32317 1.34046 1.47700 1.90079 2.25356 2.28288 2.91891 2.95366 3.48572 3.56662 3.63918 4.09590 4.13799 4.19481 4.26179 4.33468 4.44287 4.47064 4.63073 4.70963 4.73118 4.79073 4.88691 4.94690 5.01778 5.03918 5.05031 5.08916 5.17782 5.19558 5.24501 5.25318 5.43705 5.47276 5.56622 5.63683 5.67506 5.68627 5.78174 5.99452 6.16547 6.29808 6.55121 7.14418 7.27705 7.70600 8.74633 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.004199 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.316756 B = 6666.158763 C = 7459.994963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.167 3.833 3 H 0.060 0.940 4 N -0.725 5.725 5 C 0.696 3.304 6 O -0.643 6.643 7 N -0.724 5.724 8 C 0.254 3.746 9 C -0.545 4.545 10 H 0.058 0.942 11 C 0.028 3.972 12 N -0.931 5.931 13 Si 0.937 3.063 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.263 1.263 17 C -0.022 4.022 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.074 4.074 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.133 4.133 26 H 0.079 0.921 27 H 0.030 0.970 28 H 0.086 0.914 29 H 0.404 0.596 30 H 0.402 0.598 31 H 0.007 0.993 32 H 0.008 0.992 33 H 0.273 0.727 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.134 0.866 43 H 0.109 0.891 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 -2.447 -26.314 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.062 3.938 3 H 0.078 0.922 4 N -0.382 5.382 5 C 0.396 3.604 6 O -0.526 6.526 7 N -0.378 5.378 8 C 0.130 3.870 9 C -0.583 4.583 10 H 0.076 0.924 11 C -0.172 4.172 12 N -0.570 5.570 13 Si 0.761 3.239 14 H -0.189 1.189 15 H -0.197 1.197 16 H -0.187 1.187 17 C -0.022 4.022 18 C -0.193 4.193 19 C -0.199 4.199 20 C -0.074 4.074 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.158 4.158 25 C -0.151 4.151 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.104 0.896 29 H 0.241 0.759 30 H 0.237 0.763 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.127 0.873 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.628 -1.399 -26.053 26.222 hybrid contribution 0.447 0.154 1.216 1.305 sum -2.181 -1.244 -24.836 24.963 Atomic orbital electron populations 1.22279 0.94418 1.03394 1.01824 1.20860 0.94385 0.95867 0.82643 0.92224 1.45190 1.71307 1.13920 1.07825 1.16195 0.78236 0.84764 0.81178 1.90826 1.59739 1.16465 1.85579 1.45123 1.69473 1.14149 1.09008 1.18901 0.95060 0.92079 0.81000 1.21267 1.45239 0.97420 0.94340 0.92401 1.25559 0.93845 1.01974 0.95815 1.69977 1.45932 1.37511 1.03564 0.85864 0.79152 0.80243 0.78661 1.18888 1.19668 1.18737 1.19764 0.90309 0.97572 0.94592 1.21924 1.01833 1.00223 0.95323 1.22004 1.02567 0.92615 1.02762 1.19881 0.95257 0.96909 0.95350 1.21236 0.94236 0.99323 0.98295 1.21456 0.94708 0.98726 0.99122 1.21370 1.00698 0.97567 0.95280 1.21299 0.94618 1.00556 0.99314 1.21287 0.94693 0.99902 0.99206 0.90260 0.95056 0.89551 0.75880 0.76322 0.97503 0.97415 0.91822 0.90257 0.90119 0.93303 0.93165 0.90348 0.90074 0.83406 0.83537 0.84806 0.87274 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.70 71.98 0.63 -2.86 16 2 C 0.17 4.10 1.15 44.99 0.05 4.15 16 3 H 0.06 1.84 6.38 -2.39 -0.02 1.83 16 4 N -0.73 -20.89 3.62 -457.81 -1.66 -22.54 16 5 C 0.70 27.93 7.76 179.06 1.39 29.32 16 6 O -0.64 -31.04 16.00 -3.98 -0.06 -31.10 16 7 N -0.72 -30.88 5.55 -482.30 -2.68 -33.56 16 8 C 0.25 13.05 4.50 85.63 0.38 13.43 16 9 C -0.54 -30.93 9.83 25.60 0.25 -30.68 16 10 H 0.06 3.45 7.84 -2.91 -0.02 3.42 16 11 C 0.03 1.64 5.47 84.65 0.46 2.10 16 12 N -0.93 -56.41 13.96 21.45 0.30 -56.11 16 13 Si 0.94 45.19 27.47 68.60 1.88 47.07 16 14 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 15 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.26 -12.72 6.54 99.48 0.65 -12.07 16 17 C -0.02 -0.37 0.45 -52.93 -0.02 -0.40 16 18 C -0.14 -1.78 7.88 71.98 0.57 -1.21 16 19 C -0.14 -1.86 7.74 71.98 0.56 -1.30 16 20 C -0.07 -1.54 4.63 -19.87 -0.09 -1.64 16 21 C -0.11 -1.89 8.77 22.27 0.20 -1.70 16 22 C -0.12 -2.10 10.05 22.27 0.22 -1.87 16 23 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 24 C -0.14 -3.69 10.05 22.27 0.22 -3.47 16 25 C -0.13 -3.66 8.49 22.27 0.19 -3.47 16 26 H 0.08 1.37 6.29 -2.39 -0.02 1.36 16 27 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.09 1.47 6.68 -2.39 -0.02 1.45 16 29 H 0.40 9.78 6.64 -92.71 -0.62 9.17 16 30 H 0.40 15.23 8.34 -92.71 -0.77 14.45 16 31 H 0.01 0.38 7.20 -2.39 -0.02 0.37 16 32 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 33 H 0.27 15.36 8.31 -92.72 -0.77 14.59 16 34 H 0.08 0.77 7.78 -2.39 -0.02 0.75 16 35 H 0.08 0.84 6.48 -2.38 -0.02 0.83 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.74 6.33 -2.39 -0.02 0.73 16 38 H 0.08 0.86 6.42 -2.39 -0.02 0.85 16 39 H 0.08 0.77 7.07 -2.39 -0.02 0.75 16 40 H 0.15 1.59 7.11 -2.91 -0.02 1.56 16 41 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 43 H 0.11 2.96 8.06 -2.91 -0.02 2.93 16 44 H 0.10 3.38 4.75 -2.91 -0.01 3.36 16 Total: -1.00 -72.11 344.50 2.59 -69.51 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -0.42 Total: 28.84 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 5.23 Total: -2.11 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -4.04 Total: -112.21 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.06 Total: -31.10 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -72.11 2.59 -69.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.637 kcal (2) G-P(sol) polarization free energy of solvation -72.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.08 seconds