Wall clock time and date at job start Tue Mar 31 2020 07:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47104 * 2 1 4 4 N 1.46904 * 109.47353 * 240.00361 * 2 1 3 5 5 C 1.46902 * 110.99738 * 275.68865 * 4 2 1 6 6 C 1.50708 * 109.46819 * 284.03979 * 5 4 2 7 7 O 1.21291 * 119.99855 * 2.77353 * 6 5 4 8 8 N 1.34779 * 119.99836 * 182.78199 * 6 5 4 9 9 C 1.37095 * 119.99674 * 179.97438 * 8 6 5 10 10 H 1.08006 * 120.00089 * 359.97438 * 9 8 6 11 11 C 1.38947 * 119.99780 * 179.97438 * 9 8 6 12 12 N 1.31405 * 120.00211 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99901 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47356 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47178 * 120.00689 * 13 11 9 16 16 H 1.48506 * 109.47104 * 240.00116 * 13 11 9 17 17 C 1.46898 * 110.99760 * 39.63716 * 4 2 1 18 18 H 1.09004 * 109.47147 * 304.70514 * 17 4 2 19 19 C 1.52994 * 109.47385 * 64.70899 * 17 4 2 20 20 C 1.50699 * 109.47103 * 184.70964 * 17 4 2 21 21 C 1.38245 * 119.99668 * 312.94446 * 20 17 4 22 22 C 1.38236 * 119.99970 * 179.80861 * 21 20 17 23 23 C 1.38242 * 119.99682 * 0.40162 * 22 21 20 24 24 C 1.38236 * 120.00361 * 359.85202 * 23 22 21 25 25 C 1.38234 * 119.99613 * 359.95695 * 24 23 22 26 26 H 1.08997 * 109.46926 * 53.22288 * 1 2 3 27 27 H 1.08992 * 109.46987 * 293.22715 * 1 2 3 28 28 H 1.09001 * 109.46972 * 173.22037 * 1 2 3 29 29 H 1.09000 * 109.47644 * 120.00314 * 2 1 3 30 30 H 1.08996 * 109.46826 * 69.71342 * 3 2 1 31 31 H 1.09000 * 109.47257 * 189.71221 * 3 2 1 32 32 H 1.08994 * 109.46787 * 309.71125 * 3 2 1 33 33 H 1.08995 * 109.47451 * 44.03488 * 5 4 2 34 34 H 1.08993 * 109.46991 * 164.04357 * 5 4 2 35 35 H 0.96989 * 119.99913 * 359.97438 * 8 6 5 36 36 H 0.97003 * 120.00677 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47909 * 157.45079 * 19 17 4 38 38 H 1.09002 * 109.47162 * 277.45482 * 19 17 4 39 39 H 1.09005 * 109.47234 * 37.45084 * 19 17 4 40 40 H 1.07995 * 119.99879 * 0.02562 * 21 20 17 41 41 H 1.07998 * 120.00129 * 180.23190 * 22 21 20 42 42 H 1.08002 * 119.99492 * 179.83394 * 23 22 21 43 43 H 1.07993 * 119.99977 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.99972 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0670 -2.1451 -0.9863 6 6 3.2576 -2.4883 -0.1283 7 8 3.9653 -1.6053 0.3082 8 7 3.5360 -3.7766 0.1537 9 6 4.6194 -4.0888 0.9337 10 1 5.2499 -3.3025 1.3218 11 6 4.9061 -5.4168 1.2248 12 7 4.1393 -6.3735 0.7522 13 14 6.3819 -5.8422 2.2882 14 1 7.0775 -4.5939 2.6919 15 1 5.9255 -6.5683 3.5006 16 1 7.3154 -6.7027 1.5180 17 6 1.1995 -0.3589 -2.3716 18 1 0.1541 -0.5833 -2.1593 19 6 1.3469 1.1302 -2.6903 20 6 1.6579 -1.1733 -3.5538 21 6 3.0055 -1.2664 -3.8482 22 6 3.4264 -2.0167 -4.9302 23 6 2.4991 -2.6672 -5.7228 24 6 1.1513 -2.5699 -5.4315 25 6 0.7308 -1.8228 -4.3471 26 1 -0.3633 0.6153 -0.8231 27 1 -0.3633 0.4053 0.9443 28 1 -0.3633 -1.0205 -0.1213 29 1 1.8934 -0.5139 0.8899 30 1 1.8252 1.9038 0.9639 31 1 3.1161 1.4475 -0.1734 32 1 1.5421 2.0039 -0.7905 33 1 1.1540 -2.4690 -0.4869 34 1 2.1543 -2.6508 -1.9478 35 1 2.9700 -4.4826 -0.1952 36 1 4.3396 -7.3006 0.9551 37 1 1.0924 1.3052 -3.7356 38 1 0.6772 1.7065 -2.0519 39 1 2.3764 1.4401 -2.5103 40 1 3.7296 -0.7557 -3.2307 41 1 4.4793 -2.0924 -5.1580 42 1 2.8278 -3.2512 -6.5697 43 1 0.4270 -3.0778 -6.0509 44 1 -0.3222 -1.7464 -4.1198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428853962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:59 Heat of formation + Delta-G solvation = 3.313921 kcal Electronic energy + Delta-G solvation = -24045.238839 eV Core-core repulsion = 20769.945243 eV Total energy + Delta-G solvation = -3275.293596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.05007 -38.32058 -37.23454 -33.81965 -32.91393 -31.42616 -30.92410 -30.67173 -29.07794 -27.08634 -26.26308 -23.99803 -23.27663 -22.38787 -21.00884 -19.51112 -18.74913 -17.75813 -16.80492 -15.90404 -15.83349 -15.37772 -14.68664 -14.55832 -14.46244 -14.03325 -13.66095 -13.52668 -13.23441 -13.17594 -12.89959 -12.82082 -12.50521 -12.09751 -11.86802 -11.69878 -11.55357 -11.48820 -11.38336 -11.08652 -10.98711 -10.90201 -10.68164 -10.54951 -10.30349 -10.15792 -9.96147 -9.42005 -8.74357 -8.52974 -8.35911 -7.88030 -7.74934 -6.34643 -3.74951 1.49060 1.58924 3.20190 3.30038 3.37320 3.88632 4.00014 4.09628 4.29736 4.73963 5.02442 5.11541 5.14362 5.21849 5.28051 5.31499 5.32882 5.39248 5.44711 5.57934 5.64949 5.72843 5.75870 5.84868 5.87291 5.95906 6.01415 6.04446 6.14014 6.15679 6.16945 6.24595 6.30345 6.40877 6.56255 6.60679 6.69272 6.72601 6.81557 7.16970 7.43633 7.54437 7.61611 8.14642 8.70742 9.26209 9.64084 10.16691 10.83503 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.005241 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.077432 B = 5341.215232 C = 6647.313934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.084 3.916 3 C -0.148 4.148 4 N -0.498 5.498 5 C 0.040 3.960 6 C 0.449 3.551 7 O -0.575 6.575 8 N -0.569 5.569 9 C -0.294 4.294 10 H 0.102 0.898 11 C 0.020 3.980 12 N -0.904 5.904 13 Si 0.927 3.073 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.115 3.885 18 H 0.052 0.948 19 C -0.143 4.143 20 C -0.078 4.078 21 C -0.086 4.086 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.120 4.120 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.390 0.610 36 H 0.269 0.731 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 9.952 -10.106 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 C -0.205 4.205 4 N -0.222 5.222 5 C -0.091 4.091 6 C 0.234 3.766 7 O -0.459 6.459 8 N -0.206 5.206 9 C -0.424 4.424 10 H 0.120 0.880 11 C -0.181 4.181 12 N -0.546 5.546 13 Si 0.754 3.246 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.007 3.993 18 H 0.070 0.930 19 C -0.200 4.200 20 C -0.079 4.079 21 C -0.105 4.105 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.139 4.139 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.223 0.777 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.152 10.522 -9.859 16.564 hybrid contribution -0.488 -1.327 0.467 1.489 sum -8.639 9.195 -9.392 15.729 Atomic orbital electron populations 1.22540 0.98396 1.01513 1.01976 1.21630 0.91268 0.96010 0.93554 1.22151 1.02730 0.94863 1.00801 1.61926 1.50889 1.06722 1.02686 1.21937 0.97402 0.89029 1.00775 1.19775 0.87843 0.83513 0.85446 1.90506 1.52069 1.47121 1.56158 1.41871 1.27019 1.05626 1.46099 1.19722 1.04422 0.92635 1.25623 0.87978 1.25229 0.99031 0.95326 0.98477 1.69622 1.38844 1.00290 1.45809 0.85838 0.80871 0.78597 0.79257 1.19279 1.20868 1.20829 1.20660 0.95299 0.94892 0.88427 0.93032 1.22182 1.03255 0.94080 1.00513 1.19820 0.93815 0.97945 0.96302 1.21166 0.95658 0.97696 0.95947 1.21217 0.99575 0.97628 0.95571 1.21120 0.93356 0.99863 0.99851 1.21020 0.95860 0.99653 0.97803 1.20989 0.98980 0.98092 0.95837 0.92239 0.92351 0.92969 0.89339 0.93464 0.91359 0.91977 0.93579 0.89238 0.77661 0.92068 0.92766 0.91914 0.90751 0.85017 0.86225 0.86519 0.86485 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 7.84 37.16 0.29 -2.03 16 2 C 0.08 1.30 2.33 -67.71 -0.16 1.14 16 3 C -0.15 -2.05 8.33 37.16 0.31 -1.74 16 4 N -0.50 -8.14 3.45 -221.52 -0.77 -8.90 16 5 C 0.04 0.74 4.99 -4.97 -0.02 0.72 16 6 C 0.45 10.77 7.38 -10.98 -0.08 10.69 16 7 O -0.58 -15.53 14.92 5.55 0.08 -15.44 16 8 N -0.57 -14.76 5.29 -10.96 -0.06 -14.82 16 9 C -0.29 -8.33 9.68 -14.94 -0.14 -8.48 16 10 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 11 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 12 N -0.90 -25.12 13.05 55.50 0.72 -24.39 16 13 Si 0.93 21.42 29.55 -169.99 -5.02 16.39 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 C 0.12 1.54 1.75 -68.87 -0.12 1.42 16 18 H 0.05 0.65 5.78 -51.93 -0.30 0.35 16 19 C -0.14 -1.65 7.44 37.15 0.28 -1.37 16 20 C -0.08 -1.08 3.07 -104.62 -0.32 -1.40 16 21 C -0.09 -1.29 8.39 -39.58 -0.33 -1.62 16 22 C -0.12 -1.67 10.05 -39.58 -0.40 -2.06 16 23 C -0.12 -1.53 10.05 -39.58 -0.40 -1.92 16 24 C -0.13 -1.49 10.05 -39.58 -0.40 -1.88 16 25 C -0.12 -1.50 9.67 -39.58 -0.38 -1.88 16 26 H 0.06 0.65 5.36 -51.93 -0.28 0.38 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.67 7.07 -51.93 -0.37 0.31 16 29 H 0.09 1.68 6.76 -51.93 -0.35 1.33 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.73 4.35 -51.93 -0.23 0.50 16 33 H 0.05 0.81 7.07 -51.93 -0.37 0.45 16 34 H 0.09 1.65 5.71 -51.93 -0.30 1.35 16 35 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 36 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 37 H 0.05 0.57 7.94 -51.93 -0.41 0.16 16 38 H 0.06 0.64 4.92 -51.93 -0.26 0.39 16 39 H 0.07 0.94 7.31 -51.93 -0.38 0.56 16 40 H 0.13 2.16 7.94 -52.49 -0.42 1.74 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.22 7.99 -52.49 -0.42 0.80 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -30.68 344.26 -8.27 -38.95 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -6.44 Total: 13.00 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -1.98 Total: -9.97 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.10 Total: -48.12 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.08 Total: -15.44 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.68 -8.27 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.262 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds