Wall clock time and date at job start Tue Mar 31 2020 07:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47104 * 2 1 4 4 N 1.46904 * 109.47353 * 240.00361 * 2 1 3 5 5 C 1.46902 * 110.99738 * 275.68865 * 4 2 1 6 6 C 1.50708 * 109.46819 * 284.03979 * 5 4 2 7 7 O 1.21291 * 119.99855 * 2.77353 * 6 5 4 8 8 N 1.34779 * 119.99836 * 182.78199 * 6 5 4 9 9 C 1.37095 * 119.99674 * 179.97438 * 8 6 5 10 10 H 1.08006 * 120.00089 * 359.97438 * 9 8 6 11 11 C 1.38947 * 119.99780 * 179.97438 * 9 8 6 12 12 N 1.31405 * 120.00211 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99901 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47356 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47178 * 120.00689 * 13 11 9 16 16 H 1.48506 * 109.47104 * 240.00116 * 13 11 9 17 17 C 1.46898 * 110.99760 * 39.63716 * 4 2 1 18 18 H 1.09004 * 109.47147 * 304.70514 * 17 4 2 19 19 C 1.52994 * 109.47385 * 64.70899 * 17 4 2 20 20 C 1.50699 * 109.47103 * 184.70964 * 17 4 2 21 21 C 1.38245 * 119.99668 * 312.94446 * 20 17 4 22 22 C 1.38236 * 119.99970 * 179.80861 * 21 20 17 23 23 C 1.38242 * 119.99682 * 0.40162 * 22 21 20 24 24 C 1.38236 * 120.00361 * 359.85202 * 23 22 21 25 25 C 1.38234 * 119.99613 * 359.95695 * 24 23 22 26 26 H 1.08997 * 109.46926 * 53.22288 * 1 2 3 27 27 H 1.08992 * 109.46987 * 293.22715 * 1 2 3 28 28 H 1.09001 * 109.46972 * 173.22037 * 1 2 3 29 29 H 1.09000 * 109.47644 * 120.00314 * 2 1 3 30 30 H 1.08996 * 109.46826 * 69.71342 * 3 2 1 31 31 H 1.09000 * 109.47257 * 189.71221 * 3 2 1 32 32 H 1.08994 * 109.46787 * 309.71125 * 3 2 1 33 33 H 1.08995 * 109.47451 * 44.03488 * 5 4 2 34 34 H 1.08993 * 109.46991 * 164.04357 * 5 4 2 35 35 H 0.96989 * 119.99913 * 359.97438 * 8 6 5 36 36 H 0.97003 * 120.00677 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47909 * 157.45079 * 19 17 4 38 38 H 1.09002 * 109.47162 * 277.45482 * 19 17 4 39 39 H 1.09005 * 109.47234 * 37.45084 * 19 17 4 40 40 H 1.07995 * 119.99879 * 0.02562 * 21 20 17 41 41 H 1.07998 * 120.00129 * 180.23190 * 22 21 20 42 42 H 1.08002 * 119.99492 * 179.83394 * 23 22 21 43 43 H 1.07993 * 119.99977 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.99972 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0670 -2.1451 -0.9863 6 6 3.2576 -2.4883 -0.1283 7 8 3.9653 -1.6053 0.3082 8 7 3.5360 -3.7766 0.1537 9 6 4.6194 -4.0888 0.9337 10 1 5.2499 -3.3025 1.3218 11 6 4.9061 -5.4168 1.2248 12 7 4.1393 -6.3735 0.7522 13 14 6.3819 -5.8422 2.2882 14 1 7.0775 -4.5939 2.6919 15 1 5.9255 -6.5683 3.5006 16 1 7.3154 -6.7027 1.5180 17 6 1.1995 -0.3589 -2.3716 18 1 0.1541 -0.5833 -2.1593 19 6 1.3469 1.1302 -2.6903 20 6 1.6579 -1.1733 -3.5538 21 6 3.0055 -1.2664 -3.8482 22 6 3.4264 -2.0167 -4.9302 23 6 2.4991 -2.6672 -5.7228 24 6 1.1513 -2.5699 -5.4315 25 6 0.7308 -1.8228 -4.3471 26 1 -0.3633 0.6153 -0.8231 27 1 -0.3633 0.4053 0.9443 28 1 -0.3633 -1.0205 -0.1213 29 1 1.8934 -0.5139 0.8899 30 1 1.8252 1.9038 0.9639 31 1 3.1161 1.4475 -0.1734 32 1 1.5421 2.0039 -0.7905 33 1 1.1540 -2.4690 -0.4869 34 1 2.1543 -2.6508 -1.9478 35 1 2.9700 -4.4826 -0.1952 36 1 4.3396 -7.3006 0.9551 37 1 1.0924 1.3052 -3.7356 38 1 0.6772 1.7065 -2.0519 39 1 2.3764 1.4401 -2.5103 40 1 3.7296 -0.7557 -3.2307 41 1 4.4793 -2.0924 -5.1580 42 1 2.8278 -3.2512 -6.5697 43 1 0.4270 -3.0778 -6.0509 44 1 -0.3222 -1.7464 -4.1198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428853962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:58 Heat of formation + Delta-G solvation = -15.423793 kcal Electronic energy + Delta-G solvation = -24046.051367 eV Core-core repulsion = 20769.945243 eV Total energy + Delta-G solvation = -3276.106124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.26197 -39.83000 -38.70175 -35.89528 -33.98600 -33.29617 -32.46919 -31.68811 -30.07945 -28.23917 -27.89087 -25.81383 -24.33221 -23.38802 -22.12720 -21.18995 -20.21454 -19.73190 -17.94529 -17.58864 -16.90367 -16.75787 -16.51997 -15.96407 -15.68217 -15.52258 -15.17064 -14.94454 -14.56858 -14.16860 -14.09849 -13.93259 -13.84192 -13.57110 -13.31931 -13.08317 -12.92556 -12.71316 -12.65608 -12.53851 -12.39226 -12.12900 -12.09720 -12.06751 -11.76899 -11.64666 -11.47792 -11.04451 -10.27805 -9.98113 -9.74727 -9.53378 -9.07817 -8.44993 -5.93475 0.49187 0.57962 1.35879 1.40060 1.54639 2.09214 2.28478 2.72995 2.98618 3.21591 3.44076 3.75383 3.98621 4.08585 4.21239 4.22379 4.29087 4.31250 4.38029 4.41444 4.45927 4.53519 4.58949 4.69957 4.76476 4.79656 4.83518 4.94793 4.96030 5.01718 5.13528 5.18387 5.24007 5.26548 5.41601 5.49578 5.53242 5.63034 5.69976 5.76221 5.96711 6.16451 6.20301 6.38686 6.63034 7.15285 7.59235 8.15841 8.73018 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.005241 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.077432 B = 5341.215232 C = 6647.313934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 C -0.141 4.141 4 N -0.514 5.514 5 C 0.059 3.941 6 C 0.447 3.553 7 O -0.610 6.610 8 N -0.579 5.579 9 C -0.328 4.328 10 H 0.077 0.923 11 C -0.015 4.015 12 N -0.923 5.923 13 Si 0.992 3.008 14 H -0.274 1.274 15 H -0.270 1.270 16 H -0.271 1.271 17 C 0.117 3.883 18 H 0.070 0.930 19 C -0.138 4.138 20 C -0.088 4.088 21 C -0.109 4.109 22 C -0.138 4.138 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.121 4.121 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.392 0.608 36 H 0.276 0.724 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 9.879 -11.215 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 C -0.198 4.198 4 N -0.238 5.238 5 C -0.073 4.073 6 C 0.234 3.766 7 O -0.495 6.495 8 N -0.217 5.217 9 C -0.458 4.458 10 H 0.095 0.905 11 C -0.214 4.214 12 N -0.565 5.565 13 Si 0.816 3.184 14 H -0.199 1.199 15 H -0.195 1.195 16 H -0.196 1.196 17 C 0.010 3.990 18 H 0.088 0.912 19 C -0.195 4.195 20 C -0.089 4.089 21 C -0.127 4.127 22 C -0.156 4.156 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.140 4.140 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.226 0.774 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.140 0.860 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.185 10.450 -10.984 18.264 hybrid contribution 0.139 -1.276 0.761 1.492 sum -10.046 9.175 -10.223 17.018 Atomic orbital electron populations 1.22444 0.95456 1.01952 1.03610 1.21605 0.93591 0.96075 0.91537 1.22103 1.00926 0.94352 1.02426 1.61870 1.52826 1.05015 1.04096 1.21665 0.94950 0.91048 0.99592 1.20763 0.88645 0.82438 0.84749 1.90474 1.53694 1.47959 1.57407 1.41944 1.26859 1.06435 1.46438 1.19664 1.05713 0.92811 1.27569 0.90468 1.26020 1.01532 0.94650 0.99194 1.69686 1.39897 1.00723 1.46173 0.84888 0.77534 0.78095 0.77908 1.19858 1.19541 1.19617 1.20780 0.95460 0.95989 0.86820 0.91238 1.22138 1.02675 0.92879 1.01807 1.19919 0.93504 0.98576 0.96864 1.21047 0.96042 0.98983 0.96640 1.21374 1.00334 0.98103 0.95817 1.21422 0.93572 0.99481 1.00088 1.21414 0.96142 0.98928 0.97670 1.21290 0.99902 0.97294 0.95483 0.89908 0.91218 0.93262 0.93749 0.92360 0.94410 0.89299 0.92218 0.88737 0.77430 0.91415 0.91354 0.90103 0.92469 0.87847 0.86026 0.84336 0.83577 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 7.84 71.98 0.56 -3.44 16 2 C 0.08 2.48 2.33 44.92 0.10 2.59 16 3 C -0.14 -3.86 8.33 71.98 0.60 -3.26 16 4 N -0.51 -16.84 3.45 -854.77 -2.95 -19.80 16 5 C 0.06 2.22 4.99 85.56 0.43 2.65 16 6 C 0.45 22.39 7.38 87.66 0.65 23.03 16 7 O -0.61 -34.82 14.92 -3.07 -0.05 -34.86 16 8 N -0.58 -31.21 5.29 -306.97 -1.62 -32.83 16 9 C -0.33 -19.27 9.68 84.04 0.81 -18.45 16 10 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 11 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 12 N -0.92 -51.40 13.05 21.66 0.28 -51.11 16 13 Si 0.99 44.20 29.55 68.60 2.03 46.23 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 C 0.12 2.92 1.75 44.17 0.08 2.99 16 18 H 0.07 1.51 5.78 -2.38 -0.01 1.50 16 19 C -0.14 -2.89 7.44 71.98 0.54 -2.36 16 20 C -0.09 -2.32 3.07 -19.86 -0.06 -2.39 16 21 C -0.11 -3.30 8.39 22.27 0.19 -3.12 16 22 C -0.14 -3.79 10.05 22.27 0.22 -3.57 16 23 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 24 C -0.12 -2.56 10.05 22.27 0.22 -2.34 16 25 C -0.12 -2.67 9.67 22.27 0.22 -2.45 16 26 H 0.08 1.50 5.36 -2.39 -0.01 1.49 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.15 7.07 -2.39 -0.02 1.14 16 29 H 0.04 1.76 6.76 -2.39 -0.02 1.74 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.91 4.35 -2.39 -0.01 1.90 16 33 H 0.06 2.09 7.07 -2.39 -0.02 2.07 16 34 H 0.09 3.49 5.71 -2.39 -0.01 3.48 16 35 H 0.39 20.41 7.90 -92.72 -0.73 19.68 16 36 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.07 1.26 7.94 -2.39 -0.02 1.24 16 38 H 0.08 1.38 4.92 -2.39 -0.01 1.37 16 39 H 0.06 1.41 7.31 -2.38 -0.02 1.40 16 40 H 0.10 3.65 7.94 -2.91 -0.02 3.63 16 41 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 42 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 43 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.14 2.37 7.99 -2.91 -0.02 2.34 16 Total: -1.00 -68.86 344.26 3.21 -65.65 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: 0.27 Total: 39.87 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 5.25 Total: -13.15 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -4.29 Total: -103.74 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -0.05 Total: -34.86 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -68.86 3.21 -65.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.226 kcal (2) G-P(sol) polarization free energy of solvation -68.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds