Wall clock time and date at job start Tue Mar 31 2020 07:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35674 * 117.00194 * 2 1 4 4 C 1.38918 * 119.68380 * 179.97438 * 3 2 1 5 5 C 1.38380 * 119.11031 * 180.02562 * 4 3 2 6 6 C 1.38830 * 118.48599 * 0.02562 * 5 4 3 7 7 C 1.38044 * 119.28774 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.58287 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47325 * 124.99496 * 8 7 6 10 10 H 1.09000 * 109.46823 * 54.57751 * 9 8 7 11 11 C 1.53005 * 109.46899 * 174.57226 * 9 8 7 12 12 N 1.46900 * 109.47268 * 294.57138 * 9 8 7 13 13 C 1.46895 * 110.99869 * 152.04344 * 12 9 8 14 14 C 1.53001 * 109.47343 * 174.58018 * 13 12 9 15 15 C 1.50699 * 115.54689 * 39.86687 * 14 13 12 16 16 H 1.08003 * 120.00108 * 269.22200 * 15 14 13 17 17 C 1.37881 * 120.00075 * 89.22410 * 15 14 13 18 18 N 1.31509 * 120.00388 * 179.21657 * 17 15 14 19 19 Si 1.86803 * 119.99738 * 359.21261 * 17 15 14 20 20 H 1.48502 * 109.46785 * 87.93265 * 19 17 15 21 21 H 1.48492 * 109.47052 * 207.93158 * 19 17 15 22 22 H 1.48496 * 109.47336 * 327.93372 * 19 17 15 23 23 C 1.52997 * 117.49943 * 254.16071 * 14 13 12 24 24 C 1.52995 * 60.00005 * 252.50946 * 23 14 13 25 25 N 1.31963 * 120.83741 * 0.02562 * 7 6 5 26 26 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46803 * 299.99178 * 1 2 3 28 28 H 1.08997 * 109.47322 * 59.98957 * 1 2 3 29 29 H 1.08004 * 120.44421 * 0.03000 * 4 3 2 30 30 H 1.08000 * 120.75589 * 179.97438 * 5 4 3 31 31 H 1.07993 * 120.35545 * 179.72210 * 6 5 4 32 32 H 1.09001 * 109.47231 * 245.00146 * 8 7 6 33 33 H 1.09008 * 109.46780 * 4.99412 * 8 7 6 34 34 H 1.09004 * 109.46561 * 180.02562 * 11 9 8 35 35 H 1.09000 * 109.47084 * 300.00396 * 11 9 8 36 36 H 1.09000 * 109.46954 * 60.00605 * 11 9 8 37 37 H 1.00903 * 110.99707 * 28.09064 * 12 9 8 38 38 H 1.08999 * 109.47501 * 294.57988 * 13 12 9 39 39 H 1.08998 * 109.47380 * 54.58014 * 13 12 9 40 40 H 0.96995 * 120.00581 * 180.02562 * 18 17 15 41 41 H 1.09002 * 117.49736 * 0.02562 * 23 14 13 42 42 H 1.09003 * 117.49788 * 145.01246 * 23 14 13 43 43 H 1.09004 * 117.49900 * 252.51110 * 24 23 14 44 44 H 1.09004 * 117.51881 * 107.48264 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2738 0.0005 5 6 4.0486 2.5130 0.0011 6 6 3.2506 3.6491 0.0016 7 6 1.8772 3.5096 0.0010 8 6 1.0046 4.7383 0.0022 9 6 0.0352 4.6765 -1.1799 10 1 -0.5222 3.7405 -1.1441 11 6 -0.9393 5.8535 -1.1022 12 7 0.7910 4.7487 -2.4374 13 6 0.0768 4.0607 -3.5211 14 6 0.8245 4.2718 -4.8392 15 6 2.3276 4.2103 -4.7508 16 1 2.8951 5.1109 -4.5684 17 6 2.9784 3.0043 -4.9029 18 7 4.2911 2.9530 -4.8411 19 14 1.9956 1.4432 -5.1966 20 1 1.7655 1.2699 -6.6535 21 1 2.7507 0.2769 -4.6726 22 1 0.6892 1.5418 -4.4975 23 6 0.2150 5.2463 -5.8489 24 6 0.1695 3.7405 -6.1158 25 7 1.3187 2.3140 0.0005 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 4.0229 0.3693 0.0005 30 1 5.1255 2.5945 0.0019 31 1 3.6994 4.6313 0.0065 32 1 0.4399 4.7820 0.9334 33 1 1.6291 5.6274 -0.0861 34 1 -1.6303 5.8092 -1.9441 35 1 -1.5001 5.8000 -0.1691 36 1 -0.3820 6.7896 -1.1380 37 1 1.7209 4.3743 -2.3224 38 1 0.0225 2.9946 -3.3010 39 1 -0.9314 4.4659 -3.6064 40 1 4.7490 2.1047 -4.9485 41 1 -0.7184 5.7375 -5.5739 42 1 0.9013 5.8435 -6.4494 43 1 0.8259 3.3469 -6.8919 44 1 -0.7939 3.2403 -6.0166 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430731537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:10 Heat of formation + Delta-G solvation = 20.476208 kcal Electronic energy + Delta-G solvation = -24307.124196 eV Core-core repulsion = 21032.574812 eV Total energy + Delta-G solvation = -3274.549384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.46346 -38.12571 -37.31292 -35.73704 -32.39159 -32.01798 -31.33784 -29.94469 -27.68687 -26.26856 -25.71811 -24.23295 -22.77983 -22.13951 -21.52885 -19.86010 -18.84589 -18.02223 -16.48725 -16.18608 -15.85071 -15.74990 -15.17750 -14.91223 -14.56881 -14.30964 -14.02381 -13.63034 -13.25028 -13.11594 -12.66745 -12.57620 -12.22854 -12.12381 -11.99197 -11.76302 -11.63169 -11.40563 -11.19625 -11.03817 -10.91948 -10.63628 -10.37819 -10.32330 -9.96600 -9.57008 -9.44066 -9.34437 -8.92563 -8.54788 -8.38479 -8.17846 -7.45807 -6.05643 -4.05459 1.38131 1.57142 3.26035 3.31235 3.41128 3.45592 3.99285 4.36407 4.46736 4.73950 4.93439 5.16831 5.24175 5.26786 5.31014 5.33570 5.38679 5.39680 5.51107 5.63472 5.69020 5.74943 5.89247 5.90966 5.99391 6.05621 6.10371 6.19075 6.24917 6.31965 6.37854 6.46921 6.48941 6.56530 6.58031 6.66891 6.73362 6.83912 7.12768 7.22857 7.42690 7.82936 7.98959 8.10975 8.35677 8.62491 9.01755 9.59262 11.05870 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.007520 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.610847 B = 3722.457905 C = 4523.162855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.312 6.312 3 C 0.319 3.681 4 C -0.195 4.195 5 C -0.031 4.031 6 C -0.194 4.194 7 C 0.168 3.832 8 C -0.071 4.071 9 C 0.085 3.915 10 H 0.046 0.954 11 C -0.135 4.135 12 N -0.667 5.667 13 C 0.100 3.900 14 C 0.010 3.990 15 C -0.473 4.473 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.897 5.897 19 Si 0.873 3.127 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.263 1.263 23 C -0.174 4.174 24 C -0.211 4.211 25 N -0.535 5.535 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.356 0.644 38 H 0.017 0.983 39 H 0.045 0.955 40 H 0.262 0.738 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.179 -0.801 11.992 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.219 6.219 3 C 0.140 3.860 4 C -0.216 4.216 5 C -0.057 4.057 6 C -0.214 4.214 7 C 0.031 3.969 8 C -0.109 4.109 9 C -0.026 4.026 10 H 0.064 0.936 11 C -0.193 4.193 12 N -0.301 5.301 13 C -0.029 4.029 14 C 0.009 3.991 15 C -0.511 4.511 16 H 0.099 0.901 17 C -0.123 4.123 18 N -0.535 5.535 19 Si 0.702 3.298 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.187 1.187 23 C -0.211 4.211 24 C -0.249 4.249 25 N -0.260 5.260 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.178 0.822 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.050 -0.661 11.828 13.785 hybrid contribution 0.347 -1.889 -0.211 1.932 sum -6.702 -2.550 11.617 13.652 Atomic orbital electron populations 1.22793 0.77666 1.02493 1.02394 1.86211 1.22626 1.24905 1.88139 1.19738 0.89356 0.84493 0.92461 1.20996 0.91981 0.99639 1.08964 1.21365 1.00607 0.91190 0.92519 1.21826 0.93972 1.00089 1.05545 1.20860 0.91981 0.91577 0.92443 1.20826 0.97286 0.93379 0.99439 1.21438 0.94136 0.97554 0.89433 0.93632 1.21774 0.98533 0.98776 1.00239 1.60474 1.06198 1.60647 1.02791 1.21561 0.95102 0.94271 0.91983 1.19388 0.95317 0.98537 0.85887 1.20239 0.86811 0.95495 1.48569 0.90126 1.24927 0.94507 0.98423 0.94493 1.69879 1.07223 1.26009 1.50368 0.86983 0.80887 0.83268 0.78688 1.20570 1.22468 1.18736 1.22781 1.01053 0.91285 1.06017 1.22977 1.01044 0.97235 1.03666 1.66987 1.40930 0.98350 1.19684 0.89011 0.92482 0.92378 0.84565 0.84162 0.84398 0.89922 0.89182 0.92927 0.93484 0.92093 0.82237 0.96530 0.93621 0.92831 0.91192 0.89833 0.89661 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 101.05 1.05 1.61 16 2 O -0.31 -5.18 10.48 -18.72 -0.20 -5.37 16 3 C 0.32 5.61 7.49 -17.12 -0.13 5.48 16 4 C -0.20 -3.17 10.04 -39.28 -0.39 -3.56 16 5 C -0.03 -0.48 10.17 -39.31 -0.40 -0.88 16 6 C -0.19 -3.01 9.70 -39.43 -0.38 -3.39 16 7 C 0.17 2.73 5.09 -82.61 -0.42 2.31 16 8 C -0.07 -1.01 5.18 -27.88 -0.14 -1.15 16 9 C 0.09 1.38 2.57 -67.71 -0.17 1.20 16 10 H 0.05 0.81 7.46 -51.93 -0.39 0.42 16 11 C -0.14 -1.86 9.44 37.16 0.35 -1.51 16 12 N -0.67 -13.33 6.08 -106.73 -0.65 -13.98 16 13 C 0.10 2.17 5.43 -3.83 -0.02 2.15 16 14 C 0.01 0.23 1.24 -155.66 -0.19 0.04 16 15 C -0.47 -13.00 8.09 -34.44 -0.28 -13.28 16 16 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 17 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 18 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 19 Si 0.87 22.49 24.89 -169.99 -4.23 18.26 16 20 H -0.28 -7.09 7.03 56.52 0.40 -6.70 16 21 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 22 H -0.26 -6.61 5.60 56.52 0.32 -6.30 16 23 C -0.17 -3.70 9.88 -26.74 -0.26 -3.97 16 24 C -0.21 -4.71 7.55 -26.74 -0.20 -4.91 16 25 N -0.54 -9.36 8.63 -9.55 -0.08 -9.44 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 29 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.14 1.84 7.94 -52.49 -0.42 1.43 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.18 7.86 -51.92 -0.41 0.77 16 34 H 0.05 0.76 7.59 -51.93 -0.39 0.36 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.36 7.94 6.36 -39.29 -0.25 7.69 16 38 H 0.02 0.39 6.58 -51.93 -0.34 0.05 16 39 H 0.05 0.91 7.35 -51.93 -0.38 0.53 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 42 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 43 H 0.08 2.00 6.94 -51.93 -0.36 1.64 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -30.89 355.23 -7.96 -38.85 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.23 Total: 10.08 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.70 Total: -17.73 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.04 Total: -49.44 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.20 Total: -5.37 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.23 Total: 18.26 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.89 -7.96 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430731537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.325 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds