Wall clock time and date at job start Tue Mar 31 2020 07:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35674 * 117.00194 * 2 1 4 4 C 1.38918 * 119.68380 * 179.97438 * 3 2 1 5 5 C 1.38380 * 119.11031 * 180.02562 * 4 3 2 6 6 C 1.38830 * 118.48599 * 0.02562 * 5 4 3 7 7 C 1.38044 * 119.28774 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.58287 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47325 * 124.99496 * 8 7 6 10 10 H 1.09000 * 109.46823 * 54.57751 * 9 8 7 11 11 C 1.53005 * 109.46899 * 174.57226 * 9 8 7 12 12 N 1.46900 * 109.47268 * 294.57138 * 9 8 7 13 13 C 1.46895 * 110.99869 * 152.04344 * 12 9 8 14 14 C 1.53001 * 109.47343 * 174.58018 * 13 12 9 15 15 C 1.50699 * 115.54689 * 39.86687 * 14 13 12 16 16 H 1.08003 * 120.00108 * 269.22200 * 15 14 13 17 17 C 1.37881 * 120.00075 * 89.22410 * 15 14 13 18 18 N 1.31509 * 120.00388 * 179.21657 * 17 15 14 19 19 Si 1.86803 * 119.99738 * 359.21261 * 17 15 14 20 20 H 1.48502 * 109.46785 * 87.93265 * 19 17 15 21 21 H 1.48492 * 109.47052 * 207.93158 * 19 17 15 22 22 H 1.48496 * 109.47336 * 327.93372 * 19 17 15 23 23 C 1.52997 * 117.49943 * 254.16071 * 14 13 12 24 24 C 1.52995 * 60.00005 * 252.50946 * 23 14 13 25 25 N 1.31963 * 120.83741 * 0.02562 * 7 6 5 26 26 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46803 * 299.99178 * 1 2 3 28 28 H 1.08997 * 109.47322 * 59.98957 * 1 2 3 29 29 H 1.08004 * 120.44421 * 0.03000 * 4 3 2 30 30 H 1.08000 * 120.75589 * 179.97438 * 5 4 3 31 31 H 1.07993 * 120.35545 * 179.72210 * 6 5 4 32 32 H 1.09001 * 109.47231 * 245.00146 * 8 7 6 33 33 H 1.09008 * 109.46780 * 4.99412 * 8 7 6 34 34 H 1.09004 * 109.46561 * 180.02562 * 11 9 8 35 35 H 1.09000 * 109.47084 * 300.00396 * 11 9 8 36 36 H 1.09000 * 109.46954 * 60.00605 * 11 9 8 37 37 H 1.00903 * 110.99707 * 28.09064 * 12 9 8 38 38 H 1.08999 * 109.47501 * 294.57988 * 13 12 9 39 39 H 1.08998 * 109.47380 * 54.58014 * 13 12 9 40 40 H 0.96995 * 120.00581 * 180.02562 * 18 17 15 41 41 H 1.09002 * 117.49736 * 0.02562 * 23 14 13 42 42 H 1.09003 * 117.49788 * 145.01246 * 23 14 13 43 43 H 1.09004 * 117.49900 * 252.51110 * 24 23 14 44 44 H 1.09004 * 117.51881 * 107.48264 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2738 0.0005 5 6 4.0486 2.5130 0.0011 6 6 3.2506 3.6491 0.0016 7 6 1.8772 3.5096 0.0010 8 6 1.0046 4.7383 0.0022 9 6 0.0352 4.6765 -1.1799 10 1 -0.5222 3.7405 -1.1441 11 6 -0.9393 5.8535 -1.1022 12 7 0.7910 4.7487 -2.4374 13 6 0.0768 4.0607 -3.5211 14 6 0.8245 4.2718 -4.8392 15 6 2.3276 4.2103 -4.7508 16 1 2.8951 5.1109 -4.5684 17 6 2.9784 3.0043 -4.9029 18 7 4.2911 2.9530 -4.8411 19 14 1.9956 1.4432 -5.1966 20 1 1.7655 1.2699 -6.6535 21 1 2.7507 0.2769 -4.6726 22 1 0.6892 1.5418 -4.4975 23 6 0.2150 5.2463 -5.8489 24 6 0.1695 3.7405 -6.1158 25 7 1.3187 2.3140 0.0005 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 4.0229 0.3693 0.0005 30 1 5.1255 2.5945 0.0019 31 1 3.6994 4.6313 0.0065 32 1 0.4399 4.7820 0.9334 33 1 1.6291 5.6274 -0.0861 34 1 -1.6303 5.8092 -1.9441 35 1 -1.5001 5.8000 -0.1691 36 1 -0.3820 6.7896 -1.1380 37 1 1.7209 4.3743 -2.3224 38 1 0.0225 2.9946 -3.3010 39 1 -0.9314 4.4659 -3.6064 40 1 4.7490 2.1047 -4.9485 41 1 -0.7184 5.7375 -5.5739 42 1 0.9013 5.8435 -6.4494 43 1 0.8259 3.3469 -6.8919 44 1 -0.7939 3.2403 -6.0166 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430731537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:09 Heat of formation + Delta-G solvation = -0.623283 kcal Electronic energy + Delta-G solvation = -24308.039138 eV Core-core repulsion = 21032.574812 eV Total energy + Delta-G solvation = -3275.464326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67995 -39.47129 -38.87653 -37.17693 -34.19411 -33.65900 -32.63513 -31.25414 -28.80408 -27.77310 -27.40075 -25.90030 -23.99781 -23.38973 -23.26413 -21.19776 -20.72058 -19.23852 -18.19026 -17.70858 -17.08969 -16.93182 -16.92010 -16.50430 -16.11342 -15.59078 -15.31779 -15.20975 -14.80467 -14.64701 -14.37607 -14.05020 -13.70201 -13.42835 -13.23335 -13.15926 -12.96844 -12.78335 -12.67683 -12.59624 -12.32641 -12.13468 -12.01494 -11.93214 -11.70290 -11.35821 -10.89528 -10.79905 -10.61622 -10.57583 -10.23376 -9.41064 -9.04864 -8.26847 -6.27428 0.14973 0.33794 1.24216 1.30095 1.38221 2.10568 2.32481 2.75489 3.07417 3.13124 3.19373 3.56267 3.78210 4.07168 4.10650 4.16925 4.22338 4.30922 4.33249 4.38178 4.40902 4.44422 4.50079 4.55327 4.65415 4.70322 4.80143 4.81284 4.84572 4.86916 4.99045 5.05632 5.06802 5.12034 5.22523 5.28368 5.35589 5.49382 5.50087 5.54761 5.77436 6.21135 6.33811 6.50680 6.66918 6.81930 6.86470 7.38760 8.87848 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.007520 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.610847 B = 3722.457905 C = 4523.162855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.324 6.324 3 C 0.295 3.705 4 C -0.211 4.211 5 C -0.038 4.038 6 C -0.204 4.204 7 C 0.153 3.847 8 C -0.065 4.065 9 C 0.085 3.915 10 H 0.031 0.969 11 C -0.128 4.128 12 N -0.671 5.671 13 C 0.112 3.888 14 C -0.019 4.019 15 C -0.460 4.460 16 H 0.042 0.958 17 C 0.035 3.965 18 N -0.936 5.936 19 Si 0.920 3.080 20 H -0.271 1.271 21 H -0.307 1.307 22 H -0.253 1.253 23 C -0.154 4.154 24 C -0.210 4.210 25 N -0.547 5.547 26 H 0.124 0.876 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.150 0.850 30 H 0.165 0.835 31 H 0.156 0.844 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.339 0.661 38 H -0.007 1.007 39 H 0.068 0.932 40 H 0.261 0.739 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.154 -0.260 12.605 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.232 6.232 3 C 0.116 3.884 4 C -0.231 4.231 5 C -0.063 4.063 6 C -0.224 4.224 7 C 0.017 3.983 8 C -0.103 4.103 9 C -0.025 4.025 10 H 0.049 0.951 11 C -0.185 4.185 12 N -0.303 5.303 13 C -0.018 4.018 14 C -0.020 4.020 15 C -0.498 4.498 16 H 0.060 0.940 17 C -0.163 4.163 18 N -0.577 5.577 19 Si 0.748 3.252 20 H -0.197 1.197 21 H -0.235 1.235 22 H -0.177 1.177 23 C -0.191 4.191 24 C -0.247 4.247 25 N -0.272 5.272 26 H 0.142 0.858 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.168 0.832 30 H 0.183 0.817 31 H 0.174 0.826 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.158 0.842 38 H 0.011 0.989 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.063 -0.102 12.440 15.392 hybrid contribution 0.976 -1.976 -0.385 2.238 sum -8.087 -2.078 12.055 14.664 Atomic orbital electron populations 1.22980 0.76265 1.04441 1.01782 1.86191 1.24122 1.24706 1.88183 1.20082 0.90114 0.84915 0.93296 1.21312 0.91969 1.00728 1.09118 1.21754 1.01999 0.90845 0.91685 1.22161 0.94064 1.01113 1.05104 1.21287 0.92780 0.91938 0.92316 1.20868 0.97026 0.92805 0.99618 1.21555 0.94504 0.98044 0.88440 0.95114 1.21717 0.97879 0.97464 1.01483 1.60538 1.05611 1.59867 1.04318 1.21408 0.95928 0.93190 0.91292 1.19401 0.93321 1.01515 0.87727 1.20281 0.88985 0.93733 1.46789 0.93975 1.25472 0.95032 1.00843 0.94931 1.69988 1.08607 1.26478 1.52593 0.86219 0.80026 0.80086 0.78904 1.19674 1.23530 1.17726 1.22817 1.01751 0.90802 1.03778 1.22994 1.01572 0.98290 1.01870 1.66998 1.41316 0.98715 1.20167 0.85822 0.91709 0.94278 0.83248 0.81748 0.82615 0.87438 0.88057 0.93488 0.90769 0.91822 0.84197 0.98868 0.91396 0.92999 0.88029 0.90540 0.91229 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.05 10.38 113.37 1.18 2.23 16 2 O -0.32 -10.77 10.48 -89.91 -0.94 -11.71 16 3 C 0.29 10.45 7.49 84.79 0.63 11.08 16 4 C -0.21 -6.87 10.04 22.47 0.23 -6.65 16 5 C -0.04 -1.13 10.17 22.45 0.23 -0.90 16 6 C -0.20 -6.23 9.70 22.37 0.22 -6.01 16 7 C 0.15 4.88 5.09 42.49 0.22 5.10 16 8 C -0.07 -1.73 5.18 29.85 0.15 -1.57 16 9 C 0.08 2.59 2.57 44.92 0.12 2.71 16 10 H 0.03 1.05 7.46 -2.39 -0.02 1.03 16 11 C -0.13 -3.13 9.44 71.98 0.68 -2.45 16 12 N -0.67 -26.15 6.08 -491.57 -2.99 -29.14 16 13 C 0.11 4.65 5.43 86.30 0.47 5.12 16 14 C -0.02 -0.85 1.24 -52.93 -0.07 -0.92 16 15 C -0.46 -25.54 8.09 25.60 0.21 -25.33 16 16 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 17 C 0.04 2.02 5.47 84.66 0.46 2.49 16 18 N -0.94 -57.26 13.96 21.45 0.30 -56.96 16 19 Si 0.92 46.62 24.89 68.60 1.71 48.32 16 20 H -0.27 -13.26 7.03 99.48 0.70 -12.56 16 21 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 22 H -0.25 -12.35 5.60 99.48 0.56 -11.79 16 23 C -0.15 -6.18 9.88 30.59 0.30 -5.87 16 24 C -0.21 -8.86 7.55 30.59 0.23 -8.63 16 25 N -0.55 -19.05 8.63 -297.00 -2.56 -21.62 16 26 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 28 H 0.04 1.15 8.10 -2.39 -0.02 1.14 16 29 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.16 4.02 7.94 -2.91 -0.02 4.00 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.10 2.45 7.86 -2.38 -0.02 2.43 16 34 H 0.05 1.20 7.59 -2.38 -0.02 1.18 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.34 15.16 6.36 -89.69 -0.57 14.59 16 38 H -0.01 -0.31 6.58 -2.39 -0.02 -0.32 16 39 H 0.07 2.51 7.35 -2.39 -0.02 2.49 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.10 3.44 8.08 -2.39 -0.02 3.42 16 42 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.07 3.16 6.94 -2.39 -0.02 3.14 16 44 H 0.09 3.46 8.14 -2.38 -0.02 3.44 16 Total: -1.00 -67.34 355.23 1.02 -66.32 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.25 Total: 34.40 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 5.26 Total: -29.62 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -5.25 Total: -107.72 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.94 Total: -11.71 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.71 Total: 48.32 kcal Total: -67.34 1.02 -66.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430731537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.701 kcal (2) G-P(sol) polarization free energy of solvation -67.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds