Wall clock time and date at job start Tue Mar 31 2020 08:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47001 * 2 1 4 4 C 1.50705 * 109.47235 * 119.99932 * 2 1 3 5 5 H 1.07996 * 119.99973 * 119.99848 * 4 2 1 6 6 C 1.37877 * 119.99918 * 300.00071 * 4 2 1 7 7 N 1.31520 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00081 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47270 * 60.00088 * 8 6 4 10 10 H 1.48506 * 109.47054 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47384 * 299.99776 * 8 6 4 12 12 N 1.46498 * 109.47096 * 239.99861 * 2 1 3 13 13 C 1.34775 * 120.00022 * 84.99942 * 12 2 1 14 14 O 1.21283 * 120.00120 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99999 * 179.97438 * 13 12 2 16 16 C 1.53005 * 109.47007 * 179.97438 * 15 13 12 17 17 H 1.08994 * 109.47529 * 305.00254 * 16 15 13 18 18 C 1.50700 * 109.46989 * 185.00137 * 16 15 13 19 19 C 1.38228 * 120.00096 * 129.39756 * 18 16 15 20 20 C 1.38237 * 120.00225 * 179.78506 * 19 18 16 21 21 C 1.38237 * 119.99681 * 0.44568 * 20 19 18 22 22 C 1.38232 * 119.99924 * 359.80640 * 21 20 19 23 23 C 1.38231 * 120.00319 * 359.97438 * 22 21 20 24 24 N 1.46900 * 109.46904 * 65.00282 * 16 15 13 25 25 C 1.46912 * 111.00046 * 61.19176 * 24 16 15 26 26 C 1.46899 * 111.00035 * 185.14581 * 24 16 15 27 27 H 1.08996 * 109.47362 * 60.00518 * 1 2 3 28 28 H 1.09005 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47481 * 300.00054 * 1 2 3 30 30 H 0.97004 * 120.00104 * 179.97438 * 7 6 4 31 31 H 0.97001 * 120.00083 * 265.00182 * 12 2 1 32 32 H 1.08993 * 109.47309 * 299.99943 * 15 13 12 33 33 H 1.09004 * 109.47185 * 59.99963 * 15 13 12 34 34 H 1.08007 * 119.99968 * 359.97438 * 19 18 16 35 35 H 1.08001 * 119.99870 * 180.27089 * 20 19 18 36 36 H 1.08002 * 119.99778 * 179.83100 * 21 20 19 37 37 H 1.08005 * 119.99577 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.99904 * 179.97438 * 23 22 21 39 39 H 1.08997 * 109.46743 * 67.99912 * 25 24 16 40 40 H 1.08993 * 109.47005 * 188.00212 * 25 24 16 41 41 H 1.09001 * 109.46791 * 308.00038 * 25 24 16 42 42 H 1.08998 * 109.46840 * 60.00010 * 26 24 16 43 43 H 1.09003 * 109.47045 * 180.02562 * 26 24 16 44 44 H 1.08998 * 109.47142 * 299.99807 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1194 4.0079 9 1 3.8075 -1.1188 4.0078 10 1 1.8269 -0.4197 5.2205 11 1 1.8281 -2.5197 4.0083 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8581 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5874 16 6 2.7006 0.2543 -4.7589 17 1 1.7206 0.7124 -4.8916 18 6 3.0853 -0.4821 -6.0162 19 6 2.3270 -0.3355 -7.1625 20 6 2.6824 -1.0075 -8.3171 21 6 3.7910 -1.8333 -8.3226 22 6 4.5463 -1.9839 -7.1748 23 6 4.1935 -1.3084 -6.0215 24 7 3.6953 1.2985 -4.4791 25 6 5.0364 0.7196 -4.3221 26 6 3.6859 2.3286 -5.5263 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.7089 1.1615 3.4844 31 1 2.2490 -1.6318 -1.1526 32 1 3.6492 -1.1204 -3.3979 33 1 1.9777 -1.5510 -3.8325 34 1 1.4584 0.3065 -7.1570 35 1 2.0923 -0.8894 -9.2139 36 1 4.0671 -2.3604 -9.2239 37 1 5.4127 -2.6289 -7.1793 38 1 4.7835 -1.4265 -5.1247 39 1 5.3778 0.3287 -5.2806 40 1 5.7264 1.4896 -3.9772 41 1 4.9999 -0.0890 -3.5921 42 1 2.6993 2.7895 -5.5737 43 1 4.4318 3.0890 -5.2947 44 1 3.9200 1.8716 -6.4878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431774566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:06 Heat of formation + Delta-G solvation = -1.125606 kcal Electronic energy + Delta-G solvation = -23432.819263 eV Core-core repulsion = 20157.333155 eV Total energy + Delta-G solvation = -3275.486108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 7.76 seconds Orbital eigenvalues (eV) -40.31998 -38.54858 -36.90901 -34.58536 -32.32940 -32.01534 -31.21711 -29.99707 -28.40644 -27.59286 -25.23323 -24.97148 -22.73559 -22.51723 -21.24833 -19.92537 -19.09064 -17.17434 -16.78100 -16.19709 -15.79620 -15.33737 -15.10269 -14.78593 -14.72754 -14.35519 -13.89037 -13.80057 -13.51523 -13.11151 -12.64558 -12.56496 -12.28306 -12.10336 -11.97913 -11.79962 -11.54668 -11.36335 -11.25098 -11.12783 -10.98635 -10.88253 -10.77774 -10.57363 -10.24227 -10.16432 -9.05914 -8.98315 -8.96636 -8.70101 -8.46240 -8.06562 -7.72401 -6.05744 -4.14575 1.17677 1.24087 3.28990 3.34078 3.35312 3.59491 3.64503 4.13474 4.18379 4.42252 4.70433 4.75833 4.84463 4.96633 5.05989 5.25745 5.26899 5.31142 5.35219 5.39318 5.49034 5.66396 5.67030 5.75644 5.83924 5.84867 5.91880 6.00591 6.05910 6.08148 6.29935 6.34183 6.48226 6.84010 6.91660 7.05901 7.19206 7.20089 7.25342 7.60167 7.68607 7.79578 8.02100 8.24150 8.81876 8.90055 9.34031 9.54424 11.00158 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.003404 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.104464 B = 8223.561145 C = 8389.867807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.718 5.718 13 C 0.504 3.496 14 O -0.532 6.532 15 C -0.137 4.137 16 C 0.141 3.859 17 H 0.097 0.903 18 C -0.112 4.112 19 C -0.107 4.107 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.111 4.111 24 N -0.509 5.509 25 C 0.008 3.992 26 C 0.028 3.972 27 H 0.014 0.986 28 H 0.024 0.976 29 H 0.088 0.912 30 H 0.264 0.736 31 H 0.385 0.615 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.033 0.967 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.124 -4.969 -20.200 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.366 5.366 13 C 0.288 3.712 14 O -0.409 6.409 15 C -0.178 4.178 16 C 0.032 3.968 17 H 0.115 0.885 18 C -0.114 4.114 19 C -0.126 4.126 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.130 4.130 24 N -0.230 5.230 25 C -0.140 4.140 26 C -0.120 4.120 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.216 0.784 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 5.690 -3.710 -19.585 20.730 hybrid contribution 0.688 -1.418 0.080 1.578 sum 6.378 -5.128 -19.505 21.153 Atomic orbital electron populations 1.22069 0.98761 0.98889 1.00749 1.18649 0.90774 0.93968 0.80121 0.93448 1.21214 1.32268 1.13094 0.90496 0.92272 1.24888 0.94897 0.94971 0.98994 1.69902 1.35973 1.22459 1.23843 0.86534 0.79152 0.79575 0.81960 1.20221 1.21180 1.20229 1.46509 1.66082 1.13313 1.10746 1.20141 0.79008 0.87622 0.84400 1.90667 1.49845 1.15534 1.84864 1.21873 1.02984 0.98687 0.94226 1.20478 0.97335 0.90211 0.88734 0.88496 1.20774 0.95999 0.97729 0.96897 1.21121 0.99450 0.99488 0.92537 1.21137 0.97377 0.97497 0.98069 1.21134 0.95791 0.99084 0.98194 1.21150 0.99947 0.99793 0.93255 1.21282 0.96874 0.96217 0.98607 1.62279 1.04943 1.11684 1.44093 1.22773 0.90678 1.00432 1.00094 1.22324 1.02670 0.94966 0.92047 0.96717 0.95681 0.89341 0.92614 0.78360 0.89382 0.89210 0.86047 0.86237 0.86381 0.86211 0.85587 0.94884 0.91550 0.91178 0.91336 0.91678 0.95915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 2 C 0.27 6.93 2.56 -69.08 -0.18 6.75 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.36 11.32 55.43 0.63 -24.73 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 12 N -0.72 -15.17 5.07 -54.93 -0.28 -15.44 16 13 C 0.50 10.05 7.66 -10.99 -0.08 9.97 16 14 O -0.53 -12.73 15.02 5.55 0.08 -12.65 16 15 C -0.14 -1.97 4.61 -27.88 -0.13 -2.10 16 16 C 0.14 1.95 1.68 -68.86 -0.12 1.84 16 17 H 0.10 1.47 7.71 -51.93 -0.40 1.07 16 18 C -0.11 -1.30 3.63 -104.62 -0.38 -1.68 16 19 C -0.11 -1.14 9.48 -39.59 -0.38 -1.52 16 20 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 21 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 22 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 23 C -0.11 -1.18 6.94 -39.58 -0.27 -1.45 16 24 N -0.51 -7.44 4.15 -244.58 -1.01 -8.45 16 25 C 0.01 0.10 7.87 60.07 0.47 0.58 16 26 C 0.03 0.36 9.36 60.06 0.56 0.92 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.38 7.05 8.54 -40.82 -0.35 6.71 16 32 H 0.09 1.13 5.14 -51.93 -0.27 0.86 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.12 1.18 7.97 -52.48 -0.42 0.76 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.13 1.25 5.22 -52.49 -0.27 0.98 16 39 H 0.03 0.37 5.54 -51.93 -0.29 0.08 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.88 5.46 -51.93 -0.28 0.59 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.02 0.26 7.10 -51.93 -0.37 -0.10 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -31.70 349.01 -8.79 -40.48 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.70 Total: 7.30 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.74 Total: -7.65 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.67 Total: -48.63 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.70 -8.79 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431774566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.359 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.76 seconds