Wall clock time and date at job start Tue Mar 31 2020 08:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47001 * 2 1 4 4 C 1.50705 * 109.47235 * 119.99932 * 2 1 3 5 5 H 1.07996 * 119.99973 * 119.99848 * 4 2 1 6 6 C 1.37877 * 119.99918 * 300.00071 * 4 2 1 7 7 N 1.31520 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00081 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47270 * 60.00088 * 8 6 4 10 10 H 1.48506 * 109.47054 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47384 * 299.99776 * 8 6 4 12 12 N 1.46498 * 109.47096 * 239.99861 * 2 1 3 13 13 C 1.34775 * 120.00022 * 84.99942 * 12 2 1 14 14 O 1.21283 * 120.00120 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99999 * 179.97438 * 13 12 2 16 16 C 1.53005 * 109.47007 * 179.97438 * 15 13 12 17 17 H 1.08994 * 109.47529 * 305.00254 * 16 15 13 18 18 C 1.50700 * 109.46989 * 185.00137 * 16 15 13 19 19 C 1.38228 * 120.00096 * 129.39756 * 18 16 15 20 20 C 1.38237 * 120.00225 * 179.78506 * 19 18 16 21 21 C 1.38237 * 119.99681 * 0.44568 * 20 19 18 22 22 C 1.38232 * 119.99924 * 359.80640 * 21 20 19 23 23 C 1.38231 * 120.00319 * 359.97438 * 22 21 20 24 24 N 1.46900 * 109.46904 * 65.00282 * 16 15 13 25 25 C 1.46912 * 111.00046 * 61.19176 * 24 16 15 26 26 C 1.46899 * 111.00035 * 185.14581 * 24 16 15 27 27 H 1.08996 * 109.47362 * 60.00518 * 1 2 3 28 28 H 1.09005 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47481 * 300.00054 * 1 2 3 30 30 H 0.97004 * 120.00104 * 179.97438 * 7 6 4 31 31 H 0.97001 * 120.00083 * 265.00182 * 12 2 1 32 32 H 1.08993 * 109.47309 * 299.99943 * 15 13 12 33 33 H 1.09004 * 109.47185 * 59.99963 * 15 13 12 34 34 H 1.08007 * 119.99968 * 359.97438 * 19 18 16 35 35 H 1.08001 * 119.99870 * 180.27089 * 20 19 18 36 36 H 1.08002 * 119.99778 * 179.83100 * 21 20 19 37 37 H 1.08005 * 119.99577 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.99904 * 179.97438 * 23 22 21 39 39 H 1.08997 * 109.46743 * 67.99912 * 25 24 16 40 40 H 1.08993 * 109.47005 * 188.00212 * 25 24 16 41 41 H 1.09001 * 109.46791 * 308.00038 * 25 24 16 42 42 H 1.08998 * 109.46840 * 60.00010 * 26 24 16 43 43 H 1.09003 * 109.47045 * 180.02562 * 26 24 16 44 44 H 1.08998 * 109.47142 * 299.99807 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1194 4.0079 9 1 3.8075 -1.1188 4.0078 10 1 1.8269 -0.4197 5.2205 11 1 1.8281 -2.5197 4.0083 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8581 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5874 16 6 2.7006 0.2543 -4.7589 17 1 1.7206 0.7124 -4.8916 18 6 3.0853 -0.4821 -6.0162 19 6 2.3270 -0.3355 -7.1625 20 6 2.6824 -1.0075 -8.3171 21 6 3.7910 -1.8333 -8.3226 22 6 4.5463 -1.9839 -7.1748 23 6 4.1935 -1.3084 -6.0215 24 7 3.6953 1.2985 -4.4791 25 6 5.0364 0.7196 -4.3221 26 6 3.6859 2.3286 -5.5263 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.7089 1.1615 3.4844 31 1 2.2490 -1.6318 -1.1526 32 1 3.6492 -1.1204 -3.3979 33 1 1.9777 -1.5510 -3.8325 34 1 1.4584 0.3065 -7.1570 35 1 2.0923 -0.8894 -9.2139 36 1 4.0671 -2.3604 -9.2239 37 1 5.4127 -2.6289 -7.1793 38 1 4.7835 -1.4265 -5.1247 39 1 5.3778 0.3287 -5.2806 40 1 5.7264 1.4896 -3.9772 41 1 4.9999 -0.0890 -3.5921 42 1 2.6993 2.7895 -5.5737 43 1 4.4318 3.0890 -5.2947 44 1 3.9200 1.8716 -6.4878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431774566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:00 Heat of formation + Delta-G solvation = -21.598928 kcal Electronic energy + Delta-G solvation = -23433.707053 eV Core-core repulsion = 20157.333155 eV Total energy + Delta-G solvation = -3276.373898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.81 seconds Orbital eigenvalues (eV) -41.33377 -40.00921 -37.95066 -36.51564 -34.22860 -33.13897 -31.97037 -31.34309 -29.97499 -28.56615 -27.31369 -26.18432 -23.66915 -23.31180 -22.89594 -21.27681 -20.63686 -18.79939 -17.88218 -17.27456 -17.16788 -17.03462 -16.41777 -16.00403 -15.83512 -15.44728 -15.25025 -15.11200 -14.64602 -14.31672 -14.16231 -13.91953 -13.50615 -13.42519 -13.16594 -13.03906 -12.90929 -12.78964 -12.75820 -12.66190 -12.35106 -12.22498 -12.12605 -12.07759 -11.99493 -11.70772 -11.07079 -10.61420 -10.43716 -9.79643 -9.66270 -9.59103 -9.07671 -8.14403 -6.31932 0.41980 0.51137 1.45535 1.48021 1.55699 2.05326 2.39020 2.71595 2.87554 3.13942 3.15612 3.74579 3.81503 4.06121 4.15941 4.20268 4.27082 4.29341 4.45414 4.49839 4.59990 4.65728 4.67298 4.70344 4.76118 4.82251 4.95401 4.96808 5.00166 5.04990 5.10358 5.15423 5.17307 5.49034 5.57481 5.63711 5.67611 5.68341 5.76729 5.98951 6.12198 6.15768 6.17304 6.20351 6.77336 7.13815 7.36710 7.75995 8.91675 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.003404 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.104464 B = 8223.561145 C = 8389.867807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.715 5.715 13 C 0.501 3.499 14 O -0.577 6.577 15 C -0.123 4.123 16 C 0.147 3.853 17 H 0.073 0.927 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.119 4.119 24 N -0.541 5.541 25 C 0.012 3.988 26 C 0.034 3.966 27 H 0.010 0.990 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.264 0.736 31 H 0.401 0.599 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.553 -7.542 -21.503 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.170 3.830 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.365 5.365 13 C 0.288 3.712 14 O -0.456 6.456 15 C -0.163 4.163 16 C 0.038 3.962 17 H 0.092 0.908 18 C -0.123 4.123 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.138 4.138 24 N -0.263 5.263 25 C -0.136 4.136 26 C -0.114 4.114 27 H 0.029 0.971 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.236 0.764 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.149 0.851 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.134 -6.323 -20.921 22.990 hybrid contribution 0.235 -0.575 0.406 0.742 sum 7.368 -6.898 -20.515 22.864 Atomic orbital electron populations 1.21886 0.98641 0.99226 0.99351 1.18224 0.90822 0.91760 0.82183 0.98766 1.21557 1.32461 1.13492 0.90962 0.90936 1.25825 0.94930 0.95600 1.02380 1.70064 1.37134 1.24005 1.24556 0.85399 0.78661 0.78712 0.77564 1.19536 1.21253 1.18811 1.46295 1.66240 1.14025 1.09937 1.21080 0.77641 0.87234 0.85294 1.90649 1.51529 1.17812 1.85626 1.21838 1.04278 0.98795 0.91341 1.20278 0.96238 0.90020 0.89636 0.90850 1.20504 0.97129 0.98641 0.95992 1.21236 0.99639 1.00060 0.92974 1.21405 0.97752 0.97000 0.98206 1.21493 0.95150 0.98503 0.99033 1.21444 1.00549 0.99544 0.92809 1.21374 0.96592 0.96312 0.99487 1.62251 1.06053 1.12692 1.45332 1.22756 0.89712 1.00239 1.00895 1.22258 1.02222 0.94736 0.92203 0.97051 0.94249 0.91746 0.92641 0.76416 0.87165 0.86865 0.86122 0.84299 0.83931 0.84048 0.85100 0.93200 0.91848 0.91312 0.92362 0.91296 0.94838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 2 C 0.27 14.60 2.56 44.25 0.11 14.71 16 3 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 4 C -0.55 -29.52 8.73 25.60 0.22 -29.29 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.92 11.32 21.45 0.24 -53.68 16 8 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 12 N -0.71 -30.25 5.07 -446.10 -2.26 -32.51 16 13 C 0.50 20.16 7.66 87.66 0.67 20.83 16 14 O -0.58 -28.71 15.02 -3.04 -0.05 -28.75 16 15 C -0.12 -3.40 4.61 29.85 0.14 -3.26 16 16 C 0.15 4.02 1.68 44.17 0.07 4.10 16 17 H 0.07 2.31 7.71 -2.39 -0.02 2.30 16 18 C -0.12 -2.62 3.63 -19.87 -0.07 -2.69 16 19 C -0.12 -2.40 9.48 22.27 0.21 -2.19 16 20 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 21 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 22 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 23 C -0.12 -2.22 6.94 22.27 0.15 -2.07 16 24 N -0.54 -15.85 4.15 -927.71 -3.85 -19.70 16 25 C 0.01 0.28 7.87 127.69 1.00 1.28 16 26 C 0.03 0.86 9.36 127.69 1.20 2.06 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.06 3.68 6.07 -2.39 -0.01 3.66 16 30 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.40 14.22 8.54 -92.71 -0.79 13.43 16 32 H 0.11 2.59 5.14 -2.39 -0.01 2.58 16 33 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 34 H 0.12 2.32 7.97 -2.91 -0.02 2.30 16 35 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.13 2.24 5.22 -2.91 -0.02 2.23 16 39 H 0.05 1.02 5.54 -2.39 -0.01 1.01 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.63 5.46 -2.39 -0.01 1.62 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.03 0.76 7.10 -2.39 -0.02 0.74 16 Total: -1.00 -70.23 349.01 1.82 -68.41 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.20 Total: 28.40 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 5.50 Total: -6.74 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -5.87 Total: -105.89 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.75 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.23 1.82 -68.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431774566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.813 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.81 seconds