Wall clock time and date at job start Tue Mar 31 2020 09:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47290 * 2 1 4 4 C 1.36453 * 124.84509 * 270.34391 * 3 2 1 5 5 C 1.50695 * 125.57406 * 359.97438 * 4 3 2 6 6 C 1.34486 * 108.85112 * 180.13931 * 4 3 2 7 7 C 1.46690 * 106.33430 * 359.57853 * 6 4 3 8 8 C 1.47263 * 126.93951 * 180.30139 * 7 6 4 9 9 O 1.21627 * 119.99587 * 177.54502 * 8 7 6 10 10 N 1.34771 * 120.00117 * 357.54283 * 8 7 6 11 11 C 1.46499 * 119.99962 * 185.53834 * 10 8 7 12 12 C 1.52999 * 109.47572 * 183.72701 * 11 10 8 13 13 C 1.50698 * 115.54758 * 306.59453 * 12 11 10 14 14 H 1.07993 * 120.00365 * 144.86769 * 13 12 11 15 15 C 1.37880 * 119.99825 * 324.86422 * 13 12 11 16 16 N 1.31512 * 120.00163 * 349.19467 * 15 13 12 17 17 Si 1.86802 * 119.99795 * 169.19193 * 15 13 12 18 18 H 1.48496 * 109.47512 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46922 * 120.00373 * 17 15 13 20 20 H 1.48501 * 109.47149 * 239.99872 * 17 15 13 21 21 C 1.52999 * 117.50007 * 160.92207 * 12 11 10 22 22 C 1.52997 * 117.50065 * 92.25903 * 12 11 10 23 23 C 1.34652 * 124.85517 * 89.99227 * 3 2 1 24 24 C 1.50705 * 125.80093 * 0.04260 * 23 3 2 25 25 H 1.09007 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47398 * 300.00201 * 1 2 3 27 27 H 1.08999 * 109.46670 * 60.00884 * 1 2 3 28 28 H 1.08997 * 109.47058 * 239.99103 * 2 1 3 29 29 H 1.09008 * 109.46663 * 119.99930 * 2 1 3 30 30 H 1.08999 * 109.47275 * 270.21328 * 5 4 3 31 31 H 1.09002 * 109.47307 * 30.21410 * 5 4 3 32 32 H 1.09007 * 109.46908 * 150.21578 * 5 4 3 33 33 H 1.07997 * 126.83213 * 179.83867 * 6 4 3 34 34 H 0.96999 * 120.00731 * 5.54043 * 10 8 7 35 35 H 1.09012 * 109.47182 * 303.72846 * 11 10 8 36 36 H 1.09002 * 109.47363 * 63.72065 * 11 10 8 37 37 H 0.96998 * 120.00385 * 185.02436 * 16 15 13 38 38 H 1.08994 * 117.50217 * 0.02562 * 21 12 11 39 39 H 1.09003 * 117.49449 * 145.02420 * 21 12 11 40 40 H 1.08993 * 117.50447 * 214.98180 * 22 12 11 41 41 H 1.09008 * 117.49737 * 359.97438 * 22 12 11 42 42 H 1.08999 * 109.46970 * 270.02310 * 24 23 3 43 43 H 1.09003 * 109.46877 * 30.02011 * 24 23 3 44 44 H 1.08996 * 109.47314 * 150.02043 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2720 2.1184 -1.1199 5 6 2.0961 1.6450 -2.5396 6 6 2.7079 3.3355 -0.7493 7 6 2.7113 3.3436 0.7176 8 6 3.1044 4.4586 1.5955 9 8 3.0160 4.3421 2.8030 10 7 3.5621 5.6081 1.0611 11 6 4.0667 6.6715 1.9333 12 6 4.4345 7.8928 1.0883 13 6 5.3779 7.6303 -0.0572 14 1 5.2715 8.1794 -0.9810 15 6 6.3769 6.6892 0.0743 16 7 6.6447 6.1750 1.2547 17 14 7.3500 6.1445 -1.4243 18 1 6.8580 6.8684 -2.6240 19 1 8.7887 6.4496 -1.2180 20 1 7.1774 4.6829 -1.6222 21 6 4.5517 9.2390 1.8059 22 6 3.3591 8.9623 0.8869 23 6 2.2748 2.1067 1.1050 24 6 2.1091 1.6359 2.5269 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.0214 1.1852 -2.8866 31 1 1.2890 0.9135 -2.5814 32 1 1.8506 2.4938 -3.1779 33 1 2.9942 4.1470 -1.4019 34 1 3.5573 5.7314 0.0990 35 1 3.2964 6.9468 2.6538 36 1 4.9505 6.3174 2.4641 37 1 7.3940 5.5683 1.3608 38 1 4.3673 9.2546 2.8800 39 1 5.3109 9.9350 1.4491 40 1 3.3342 9.4764 -0.0738 41 1 2.3894 8.7956 1.3562 42 1 1.0999 1.8640 2.8699 43 1 2.2745 0.5595 2.5748 44 1 2.8329 2.1434 3.1645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435227372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:10 Heat of formation + Delta-G solvation = 21.465080 kcal Electronic energy + Delta-G solvation = -23681.244344 eV Core-core repulsion = 20406.737841 eV Total energy + Delta-G solvation = -3274.506503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22426 -38.25924 -36.48071 -34.04825 -32.91260 -32.37422 -32.06928 -29.36462 -28.95366 -26.19205 -25.37274 -24.18233 -23.44069 -21.31150 -21.06001 -19.28970 -19.17762 -18.20107 -16.62428 -16.23833 -15.48025 -15.11078 -14.72426 -14.63221 -14.46529 -13.86138 -13.56866 -13.29781 -13.21162 -13.05417 -12.89457 -12.77860 -12.55023 -12.22393 -12.11861 -11.94914 -11.70345 -11.50890 -11.43988 -11.33110 -11.08618 -11.00372 -10.69242 -10.43728 -10.18940 -9.51810 -9.07145 -8.82521 -8.72966 -8.29841 -8.13369 -7.78159 -7.49898 -5.99405 -4.09628 2.23501 2.72511 2.93453 3.25774 3.36000 3.37834 4.35061 4.35616 4.47022 4.58524 4.75716 4.80970 4.98284 5.04655 5.06923 5.23977 5.35749 5.40439 5.46345 5.54314 5.57638 5.73562 5.82021 5.85020 5.93882 6.01842 6.11954 6.24025 6.30171 6.41106 6.61531 6.66603 6.71413 6.83571 7.00024 7.16370 7.20396 7.35904 7.40602 7.51962 7.66438 7.82516 8.00998 8.41186 8.78811 8.94973 9.43058 9.51182 10.97200 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.005057 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.210453 B = 5535.375874 C = 6319.599856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.096 3.904 3 N -0.441 5.441 4 C 0.000 4.000 5 C -0.080 4.080 6 C -0.160 4.160 7 C -0.215 4.215 8 C 0.579 3.421 9 O -0.576 6.576 10 N -0.684 5.684 11 C 0.164 3.836 12 C 0.040 3.960 13 C -0.500 4.500 14 H 0.061 0.939 15 C 0.078 3.922 16 N -0.865 5.865 17 Si 0.887 3.113 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.281 1.281 21 C -0.197 4.197 22 C -0.212 4.212 23 C 0.090 3.910 24 C -0.086 4.086 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.399 0.601 35 H 0.025 0.975 36 H 0.106 0.894 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 -12.914 -4.733 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.120 5.120 4 C -0.107 4.107 5 C -0.137 4.137 6 C -0.184 4.184 7 C -0.224 4.224 8 C 0.367 3.633 9 O -0.459 6.459 10 N -0.330 5.330 11 C 0.041 3.959 12 C 0.039 3.961 13 C -0.537 4.537 14 H 0.080 0.920 15 C -0.127 4.127 16 N -0.500 5.500 17 Si 0.714 3.286 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.207 1.207 21 C -0.236 4.236 22 C -0.249 4.249 23 C -0.025 4.025 24 C -0.144 4.144 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.234 0.766 35 H 0.043 0.957 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.366 -13.485 -3.835 17.436 hybrid contribution 0.674 -0.107 -1.325 1.491 sum -9.692 -13.592 -5.161 17.473 Atomic orbital electron populations 1.22162 0.94510 1.02650 1.03344 1.21774 0.95436 0.81252 1.04092 1.43510 1.51890 1.11461 1.05135 1.20076 1.09497 0.92785 0.88389 1.20273 1.01619 1.01743 0.90079 1.21881 1.06068 0.96822 0.93636 1.20377 1.13713 0.95150 0.93203 1.17248 0.77382 0.81888 0.86802 1.90634 1.57870 1.82515 1.14903 1.45545 1.61205 1.15207 1.11046 1.20954 0.97718 0.86189 0.91048 1.19193 0.94738 0.85908 0.96276 1.20501 1.13863 1.21203 0.98151 0.92048 1.24948 0.96716 0.95370 0.95627 1.69864 1.27523 1.30964 1.21658 0.86613 0.79795 0.78804 0.83358 1.19642 1.21078 1.20656 1.22910 1.00054 1.04893 0.95701 1.22949 0.92965 1.08821 1.00207 1.20180 1.02173 0.91286 0.88836 1.20482 1.03959 0.99899 0.90014 0.90982 0.91714 0.91868 0.89459 0.89327 0.91445 0.92230 0.90198 0.83791 0.76630 0.95673 0.87649 0.92747 0.91567 0.90298 0.90713 0.91398 0.91061 0.92686 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 37.16 0.38 -0.92 16 2 C 0.10 0.88 6.09 -4.04 -0.02 0.85 16 3 N -0.44 -6.02 2.69 -107.96 -0.29 -6.31 16 4 C 0.00 0.00 6.85 -81.86 -0.56 -0.57 16 5 C -0.08 -0.80 9.81 36.00 0.35 -0.45 16 6 C -0.16 -2.75 10.46 -37.50 -0.39 -3.14 16 7 C -0.21 -4.21 6.29 -103.35 -0.65 -4.86 16 8 C 0.58 13.29 7.80 -12.59 -0.10 13.20 16 9 O -0.58 -14.41 14.83 5.25 0.08 -14.33 16 10 N -0.68 -15.91 5.27 -61.43 -0.32 -16.23 16 11 C 0.16 4.09 4.76 -4.04 -0.02 4.07 16 12 C 0.04 0.97 2.00 -155.66 -0.31 0.66 16 13 C -0.50 -13.05 8.26 -34.44 -0.28 -13.34 16 14 H 0.06 1.60 7.84 -52.49 -0.41 1.19 16 15 C 0.08 2.06 5.12 -17.82 -0.09 1.97 16 16 N -0.86 -23.84 10.77 55.43 0.60 -23.24 16 17 Si 0.89 20.49 29.55 -169.99 -5.02 15.47 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.20 -4.49 9.96 -26.69 -0.27 -4.76 16 22 C -0.21 -4.61 9.92 -26.69 -0.26 -4.88 16 23 C 0.09 1.50 6.89 -81.89 -0.56 0.94 16 24 C -0.09 -1.25 9.49 36.01 0.34 -0.91 16 25 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 28 H 0.09 0.65 7.54 -51.93 -0.39 0.26 16 29 H 0.09 0.72 6.88 -51.92 -0.36 0.36 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.49 7.61 -51.93 -0.40 0.09 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.14 2.37 7.70 -52.49 -0.40 1.97 16 34 H 0.40 8.98 7.05 -40.82 -0.29 8.69 16 35 H 0.03 0.62 8.06 -51.92 -0.42 0.20 16 36 H 0.11 2.96 6.06 -51.93 -0.31 2.64 16 37 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.62 6.92 -51.93 -0.36 0.26 16 44 H 0.10 1.75 6.52 -51.93 -0.34 1.41 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -30.90 360.26 -9.02 -39.92 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.04 Total: 11.43 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.45 Total: -12.14 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.02 Total: -45.78 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.08 Total: -14.33 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.90 -9.02 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435227372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.389 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds