Wall clock time and date at job start Tue Mar 31 2020 09:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47290 * 2 1 4 4 C 1.36453 * 124.84509 * 270.34391 * 3 2 1 5 5 C 1.50695 * 125.57406 * 359.97438 * 4 3 2 6 6 C 1.34486 * 108.85112 * 180.13931 * 4 3 2 7 7 C 1.46690 * 106.33430 * 359.57853 * 6 4 3 8 8 C 1.47263 * 126.93951 * 180.30139 * 7 6 4 9 9 O 1.21627 * 119.99587 * 177.54502 * 8 7 6 10 10 N 1.34771 * 120.00117 * 357.54283 * 8 7 6 11 11 C 1.46499 * 119.99962 * 185.53834 * 10 8 7 12 12 C 1.52999 * 109.47572 * 183.72701 * 11 10 8 13 13 C 1.50698 * 115.54758 * 306.59453 * 12 11 10 14 14 H 1.07993 * 120.00365 * 144.86769 * 13 12 11 15 15 C 1.37880 * 119.99825 * 324.86422 * 13 12 11 16 16 N 1.31512 * 120.00163 * 349.19467 * 15 13 12 17 17 Si 1.86802 * 119.99795 * 169.19193 * 15 13 12 18 18 H 1.48496 * 109.47512 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46922 * 120.00373 * 17 15 13 20 20 H 1.48501 * 109.47149 * 239.99872 * 17 15 13 21 21 C 1.52999 * 117.50007 * 160.92207 * 12 11 10 22 22 C 1.52997 * 117.50065 * 92.25903 * 12 11 10 23 23 C 1.34652 * 124.85517 * 89.99227 * 3 2 1 24 24 C 1.50705 * 125.80093 * 0.04260 * 23 3 2 25 25 H 1.09007 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47398 * 300.00201 * 1 2 3 27 27 H 1.08999 * 109.46670 * 60.00884 * 1 2 3 28 28 H 1.08997 * 109.47058 * 239.99103 * 2 1 3 29 29 H 1.09008 * 109.46663 * 119.99930 * 2 1 3 30 30 H 1.08999 * 109.47275 * 270.21328 * 5 4 3 31 31 H 1.09002 * 109.47307 * 30.21410 * 5 4 3 32 32 H 1.09007 * 109.46908 * 150.21578 * 5 4 3 33 33 H 1.07997 * 126.83213 * 179.83867 * 6 4 3 34 34 H 0.96999 * 120.00731 * 5.54043 * 10 8 7 35 35 H 1.09012 * 109.47182 * 303.72846 * 11 10 8 36 36 H 1.09002 * 109.47363 * 63.72065 * 11 10 8 37 37 H 0.96998 * 120.00385 * 185.02436 * 16 15 13 38 38 H 1.08994 * 117.50217 * 0.02562 * 21 12 11 39 39 H 1.09003 * 117.49449 * 145.02420 * 21 12 11 40 40 H 1.08993 * 117.50447 * 214.98180 * 22 12 11 41 41 H 1.09008 * 117.49737 * 359.97438 * 22 12 11 42 42 H 1.08999 * 109.46970 * 270.02310 * 24 23 3 43 43 H 1.09003 * 109.46877 * 30.02011 * 24 23 3 44 44 H 1.08996 * 109.47314 * 150.02043 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2720 2.1184 -1.1199 5 6 2.0961 1.6450 -2.5396 6 6 2.7079 3.3355 -0.7493 7 6 2.7113 3.3436 0.7176 8 6 3.1044 4.4586 1.5955 9 8 3.0160 4.3421 2.8030 10 7 3.5621 5.6081 1.0611 11 6 4.0667 6.6715 1.9333 12 6 4.4345 7.8928 1.0883 13 6 5.3779 7.6303 -0.0572 14 1 5.2715 8.1794 -0.9810 15 6 6.3769 6.6892 0.0743 16 7 6.6447 6.1750 1.2547 17 14 7.3500 6.1445 -1.4243 18 1 6.8580 6.8684 -2.6240 19 1 8.7887 6.4496 -1.2180 20 1 7.1774 4.6829 -1.6222 21 6 4.5517 9.2390 1.8059 22 6 3.3591 8.9623 0.8869 23 6 2.2748 2.1067 1.1050 24 6 2.1091 1.6359 2.5269 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.0214 1.1852 -2.8866 31 1 1.2890 0.9135 -2.5814 32 1 1.8506 2.4938 -3.1779 33 1 2.9942 4.1470 -1.4019 34 1 3.5573 5.7314 0.0990 35 1 3.2964 6.9468 2.6538 36 1 4.9505 6.3174 2.4641 37 1 7.3940 5.5683 1.3608 38 1 4.3673 9.2546 2.8800 39 1 5.3109 9.9350 1.4491 40 1 3.3342 9.4764 -0.0738 41 1 2.3894 8.7956 1.3562 42 1 1.0999 1.8640 2.8699 43 1 2.2745 0.5595 2.5748 44 1 2.8329 2.1434 3.1645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435227372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:08 Heat of formation + Delta-G solvation = 4.196322 kcal Electronic energy + Delta-G solvation = -23681.993173 eV Core-core repulsion = 20406.737841 eV Total energy + Delta-G solvation = -3275.255332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.40665 -40.04441 -38.34685 -35.04626 -34.61019 -34.09785 -33.53720 -30.41850 -30.00284 -27.96737 -27.28332 -25.47742 -24.37161 -22.98257 -22.51917 -21.13313 -20.67948 -19.59984 -18.23729 -17.74961 -16.77481 -16.66948 -16.34147 -16.29555 -15.70910 -15.45495 -15.20751 -14.67566 -14.30864 -14.16386 -14.02600 -13.99724 -13.73551 -13.54748 -13.44616 -13.36072 -13.14588 -12.89889 -12.84001 -12.63838 -12.44679 -12.27147 -12.22533 -12.08309 -12.04245 -11.41137 -11.05632 -10.69271 -10.58446 -10.08669 -9.72012 -9.38319 -8.87085 -8.00791 -6.16906 0.86229 1.40479 1.45449 1.47534 1.54965 1.88968 2.42162 2.68320 2.82412 3.11657 3.66715 3.81282 3.81600 3.93802 4.13079 4.19171 4.25879 4.37914 4.41529 4.51059 4.54455 4.66958 4.70488 4.77860 4.78459 4.81584 4.82448 4.87523 4.96216 5.00707 5.06426 5.13258 5.14343 5.26842 5.29105 5.42132 5.53096 5.60465 5.87008 5.93704 5.94738 6.19192 6.39801 6.45264 6.81272 7.08765 7.46143 7.64009 8.94219 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.005057 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.210453 B = 5535.375874 C = 6319.599856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 N -0.432 5.432 4 C 0.018 3.982 5 C -0.078 4.078 6 C -0.194 4.194 7 C -0.263 4.263 8 C 0.572 3.428 9 O -0.609 6.609 10 N -0.684 5.684 11 C 0.177 3.823 12 C 0.010 3.990 13 C -0.507 4.507 14 H 0.060 0.940 15 C 0.039 3.961 16 N -0.893 5.893 17 Si 0.945 3.055 18 H -0.261 1.261 19 H -0.286 1.286 20 H -0.284 1.284 21 C -0.197 4.197 22 C -0.187 4.187 23 C 0.093 3.907 24 C -0.082 4.082 25 H 0.101 0.899 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.401 0.599 35 H 0.019 0.981 36 H 0.070 0.930 37 H 0.258 0.742 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.638 -15.062 -6.916 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.034 4.034 3 N -0.109 5.109 4 C -0.091 4.091 5 C -0.135 4.135 6 C -0.217 4.217 7 C -0.273 4.273 8 C 0.362 3.638 9 O -0.494 6.494 10 N -0.330 5.330 11 C 0.053 3.947 12 C 0.010 3.990 13 C -0.544 4.544 14 H 0.078 0.922 15 C -0.163 4.163 16 N -0.530 5.530 17 Si 0.771 3.229 18 H -0.185 1.185 19 H -0.212 1.212 20 H -0.210 1.210 21 C -0.235 4.235 22 C -0.224 4.224 23 C -0.025 4.025 24 C -0.139 4.139 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.158 0.842 34 H 0.236 0.764 35 H 0.037 0.963 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.703 -15.640 -6.052 20.450 hybrid contribution 1.020 0.499 -0.635 1.301 sum -10.682 -15.141 -6.687 19.699 Atomic orbital electron populations 1.22137 0.93179 1.04313 1.02505 1.22246 0.96483 0.78571 1.06137 1.43847 1.50225 1.12867 1.03939 1.20659 1.06424 0.91653 0.90337 1.20426 1.03280 1.02820 0.86990 1.21954 1.08632 0.98618 0.92526 1.20292 1.17326 0.95497 0.94208 1.17856 0.76543 0.82450 0.86982 1.90591 1.59325 1.83128 1.16391 1.45483 1.61451 1.15291 1.10824 1.20613 0.95930 0.86935 0.91200 1.19240 0.96597 0.86423 0.96765 1.20686 1.14064 1.21252 0.98419 0.92209 1.25566 0.97689 0.95406 0.97670 1.70031 1.27927 1.31605 1.23436 0.85698 0.78283 0.78074 0.80825 1.18467 1.21214 1.20969 1.22925 1.00725 1.03451 0.96404 1.22938 0.92811 1.06231 1.00405 1.20391 1.00878 0.90763 0.90455 1.20444 1.03426 1.01736 0.88291 0.88047 0.93133 0.92165 0.86887 0.87944 0.90204 0.89466 0.89445 0.84227 0.76404 0.96328 0.91207 0.93289 0.90809 0.90370 0.89595 0.90082 0.90114 0.89011 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.24 71.98 0.74 -1.15 16 2 C 0.09 1.21 6.09 86.38 0.53 1.73 16 3 N -0.43 -10.77 2.69 -495.49 -1.33 -12.10 16 4 C 0.02 0.47 6.85 40.98 0.28 0.75 16 5 C -0.08 -1.29 9.81 71.23 0.70 -0.59 16 6 C -0.19 -6.70 10.46 23.62 0.25 -6.45 16 7 C -0.26 -10.63 6.29 -19.04 -0.12 -10.75 16 8 C 0.57 27.64 7.80 86.62 0.68 28.32 16 9 O -0.61 -32.28 14.83 -4.12 -0.06 -32.34 16 10 N -0.68 -33.38 5.27 -466.52 -2.46 -35.84 16 11 C 0.18 9.23 4.76 86.38 0.41 9.64 16 12 C 0.01 0.52 2.00 -52.93 -0.11 0.41 16 13 C -0.51 -26.74 8.26 25.60 0.21 -26.53 16 14 H 0.06 3.11 7.84 -2.91 -0.02 3.09 16 15 C 0.04 2.06 5.12 84.66 0.43 2.50 16 16 N -0.89 -50.97 10.77 21.45 0.23 -50.74 16 17 Si 0.95 42.53 29.55 68.60 2.03 44.56 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 C -0.20 -8.95 9.96 30.62 0.30 -8.65 16 22 C -0.19 -7.98 9.92 30.62 0.30 -7.67 16 23 C 0.09 3.05 6.89 41.78 0.29 3.33 16 24 C -0.08 -2.33 9.49 71.24 0.68 -1.65 16 25 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 28 H 0.11 1.09 7.54 -2.39 -0.02 1.08 16 29 H 0.10 1.21 6.88 -2.38 -0.02 1.20 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 0.99 7.61 -2.39 -0.02 0.97 16 32 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.14 4.74 7.70 -2.91 -0.02 4.71 16 34 H 0.40 18.86 7.05 -92.71 -0.65 18.21 16 35 H 0.02 0.96 8.06 -2.38 -0.02 0.94 16 36 H 0.07 4.15 6.06 -2.39 -0.01 4.14 16 37 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 38 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 40 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.09 1.86 6.92 -2.39 -0.02 1.85 16 44 H 0.07 2.43 6.52 -2.39 -0.02 2.41 16 Total: -1.00 -70.03 360.26 4.31 -65.71 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: 0.34 Total: 37.50 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 5.57 Total: -16.75 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -3.56 Total: -98.68 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.06 Total: -32.34 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -70.03 4.31 -65.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435227372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.908 kcal (2) G-P(sol) polarization free energy of solvation -70.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds