Wall clock time and date at job start Tue Mar 31 2020 07:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46828 * 2 1 4 4 N 1.46496 * 109.47026 * 120.00511 * 2 1 3 5 5 C 1.34781 * 120.00045 * 274.99640 * 4 2 1 6 6 O 1.21589 * 119.99631 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00150 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99682 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46736 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.47017 * 299.99505 * 9 8 7 11 11 C 1.52991 * 109.47616 * 59.99429 * 9 8 7 12 12 C 1.50705 * 109.47248 * 179.97438 * 9 8 7 13 13 H 1.08003 * 119.99518 * 357.00371 * 12 9 8 14 14 C 1.37870 * 119.99959 * 177.00009 * 12 9 8 15 15 N 1.31517 * 120.00438 * 5.54323 * 14 12 9 16 16 Si 1.86801 * 119.99736 * 185.53802 * 14 12 9 17 17 H 1.48496 * 109.46972 * 85.00524 * 16 14 12 18 18 H 1.48496 * 109.47151 * 205.00335 * 16 14 12 19 19 H 1.48502 * 109.47366 * 325.00403 * 16 14 12 20 20 C 1.50696 * 109.47039 * 240.00413 * 2 1 3 21 21 C 1.38236 * 120.00397 * 99.99811 * 20 2 1 22 22 C 1.38230 * 120.00249 * 179.97438 * 21 20 2 23 23 C 1.38237 * 120.00143 * 359.97438 * 22 21 20 24 24 C 1.38231 * 119.99820 * 359.97438 * 23 22 21 25 25 C 1.38237 * 119.99985 * 279.91066 * 20 2 1 26 26 H 1.09000 * 109.47240 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47389 * 299.99776 * 1 2 3 28 28 H 1.09002 * 109.47754 * 59.99621 * 1 2 3 29 29 H 0.96999 * 120.00235 * 95.00091 * 4 2 1 30 30 H 0.96999 * 120.00130 * 0.02562 * 7 5 4 31 31 H 1.09002 * 109.46630 * 299.99281 * 8 7 5 32 32 H 1.08990 * 109.47337 * 59.99930 * 8 7 5 33 33 H 1.09005 * 109.47086 * 53.93362 * 10 9 8 34 34 H 1.09002 * 109.47454 * 173.93753 * 10 9 8 35 35 H 1.09004 * 109.46818 * 293.94080 * 10 9 8 36 36 H 1.08997 * 109.47196 * 60.00337 * 11 9 8 37 37 H 1.09004 * 109.47219 * 180.02562 * 11 9 8 38 38 H 1.08998 * 109.47354 * 300.00123 * 11 9 8 39 39 H 0.96996 * 119.99664 * 179.97438 * 15 14 12 40 40 H 1.08001 * 119.99895 * 0.25364 * 21 20 2 41 41 H 1.08006 * 119.99704 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.99867 * 179.97438 * 23 22 21 43 43 H 1.08007 * 119.99928 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.99932 * 0.08358 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8575 1.1612 2.4119 7 7 2.5968 -0.6537 3.4574 8 6 2.7362 0.0770 4.7195 9 6 3.2619 -0.8690 5.8010 10 6 2.2789 -2.0265 5.9878 11 6 4.6247 -1.4206 5.3778 12 6 3.4059 -0.1173 7.0992 13 1 3.1946 0.9412 7.1366 14 6 3.8074 -0.7808 8.2391 15 7 4.1694 -2.0434 8.1721 16 14 3.8372 0.1136 9.8788 17 1 2.4874 0.0617 10.4956 18 1 4.8192 -0.5396 10.7812 19 1 4.2289 1.5297 9.6633 20 6 2.0323 -0.7103 -1.2305 21 6 2.4587 0.0195 -2.3243 22 6 2.9199 -0.6320 -3.4528 23 6 2.9553 -2.0135 -3.4874 24 6 2.5300 -2.7434 -2.3932 25 6 2.0684 -2.0918 -1.2648 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 2.2490 -1.6318 1.1525 30 1 2.8281 -1.5947 3.4136 31 1 3.4369 0.9013 4.5865 32 1 1.7654 0.4702 5.0208 33 1 2.0922 -2.5035 5.0256 34 1 2.7028 -2.7554 6.6786 35 1 1.3412 -1.6452 6.3922 36 1 5.3250 -0.5960 5.2448 37 1 4.9989 -2.0949 6.1481 38 1 4.5209 -1.9642 4.4387 39 1 4.4521 -2.5100 8.9741 40 1 2.4356 1.0989 -2.2955 41 1 3.2526 -0.0617 -4.3075 42 1 3.3153 -2.5225 -4.3692 43 1 2.5572 -3.8227 -2.4203 44 1 1.7354 -2.6620 -0.4102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457393113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:48 Heat of formation + Delta-G solvation = -16.316343 kcal Electronic energy + Delta-G solvation = -22898.512875 eV Core-core repulsion = 19622.368047 eV Total energy + Delta-G solvation = -3276.144828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.14931 -39.08464 -36.60874 -35.26861 -33.26185 -31.71943 -31.10751 -30.49289 -29.12140 -25.70360 -25.58241 -24.90335 -23.77188 -22.90716 -21.14987 -20.19141 -18.73797 -18.38103 -17.02515 -16.05710 -15.78746 -15.38890 -15.02547 -14.79668 -14.63691 -14.17554 -13.79293 -13.61009 -13.58110 -13.25668 -12.84819 -12.83789 -12.39122 -12.25421 -12.14095 -11.72606 -11.39015 -11.26893 -11.16857 -10.93687 -10.84029 -10.67365 -10.35416 -10.19926 -9.75771 -9.59636 -9.29353 -9.16306 -9.08646 -8.88484 -8.77087 -8.38896 -8.16549 -6.00724 -4.09294 1.08600 1.16071 3.10157 3.30508 3.36836 3.40945 3.56365 3.68735 4.40741 4.43250 4.64354 4.74972 4.76144 4.88298 5.20358 5.21531 5.26500 5.30666 5.36282 5.60676 5.74090 5.76058 5.88295 6.14473 6.20679 6.25279 6.27218 6.33557 6.39722 6.53780 6.72470 6.74569 6.83184 6.84782 6.93523 7.05765 7.12910 7.33460 7.44310 7.58453 7.72550 8.02057 8.14304 8.40209 8.51418 8.90360 9.07765 9.56030 11.01371 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032388 B = 0.002957 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.306643 B = 9465.915930 C = 9835.261080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.202 3.798 3 H 0.095 0.905 4 N -0.749 5.749 5 C 0.699 3.301 6 O -0.599 6.599 7 N -0.733 5.733 8 C 0.151 3.849 9 C 0.056 3.944 10 C -0.128 4.128 11 C -0.129 4.129 12 C -0.507 4.507 13 H 0.058 0.942 14 C 0.067 3.933 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.086 4.086 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.113 4.113 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.392 0.608 30 H 0.393 0.607 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.006 0.994 34 H 0.080 0.920 35 H 0.029 0.971 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.005 0.995 39 H 0.259 0.741 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -2.780 -21.024 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.096 3.904 3 H 0.113 0.887 4 N -0.406 5.406 5 C 0.399 3.601 6 O -0.478 6.478 7 N -0.387 5.387 8 C 0.028 3.972 9 C 0.055 3.945 10 C -0.186 4.186 11 C -0.187 4.187 12 C -0.545 4.545 13 H 0.076 0.924 14 C -0.134 4.134 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.087 4.087 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.132 4.132 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.228 0.772 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.851 -1.813 -20.791 21.222 hybrid contribution 0.260 -0.516 0.839 1.018 sum -3.591 -2.329 -19.952 20.406 Atomic orbital electron populations 1.22185 0.94555 1.02210 1.02664 1.19540 0.93814 0.96460 0.80551 0.88685 1.45288 1.72886 1.13484 1.08926 1.16056 0.78563 0.85163 0.80324 1.90875 1.57732 1.14482 1.84729 1.45516 1.69456 1.14024 1.09736 1.21564 1.00028 0.94945 0.80685 1.18359 0.92111 0.92117 0.91874 1.21796 0.98527 1.00214 0.98018 1.21835 0.98668 1.00068 0.98117 1.20978 1.45699 0.95224 0.92615 0.92405 1.24873 0.94736 0.94965 0.98871 1.69829 1.44504 1.09684 1.28415 0.86598 0.77762 0.79911 0.83660 1.20638 1.21366 1.19960 1.20038 0.99058 0.93990 0.95578 1.21037 0.98546 1.00069 0.93055 1.21143 0.99701 0.94656 0.98093 1.21169 1.00155 0.94260 0.98569 1.21146 0.98930 0.99962 0.93458 1.20967 0.99958 0.93862 0.98371 0.92516 0.91303 0.91835 0.77362 0.77243 0.92995 0.92940 0.97516 0.90089 0.95206 0.95477 0.89664 0.97639 0.93047 0.85741 0.85973 0.86154 0.85957 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.46 37.16 0.35 -1.42 16 2 C 0.20 2.45 2.78 -69.09 -0.19 2.26 16 3 H 0.10 1.31 7.44 -51.93 -0.39 0.92 16 4 N -0.75 -10.12 5.03 -59.82 -0.30 -10.42 16 5 C 0.70 12.58 8.53 -86.92 -0.74 11.84 16 6 O -0.60 -13.01 16.01 5.29 0.08 -12.93 16 7 N -0.73 -13.36 4.91 -65.23 -0.32 -13.68 16 8 C 0.15 3.27 4.50 -4.04 -0.02 3.25 16 9 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 10 C -0.13 -2.89 8.03 37.16 0.30 -2.59 16 11 C -0.13 -2.94 8.10 37.15 0.30 -2.64 16 12 C -0.51 -13.38 8.01 -34.44 -0.28 -13.66 16 13 H 0.06 1.55 7.75 -52.48 -0.41 1.14 16 14 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 15 N -0.89 -23.73 9.45 55.43 0.52 -23.20 16 16 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.09 -0.89 4.95 -104.63 -0.52 -1.41 16 21 C -0.11 -1.03 9.67 -39.59 -0.38 -1.41 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 23 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 25 C -0.11 -1.06 9.06 -39.58 -0.36 -1.42 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.39 4.39 6.88 -40.82 -0.28 4.11 16 30 H 0.39 6.43 6.17 -40.82 -0.25 6.18 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 34 H 0.08 2.00 6.25 -51.93 -0.32 1.68 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 2.14 6.10 -51.93 -0.32 1.82 16 38 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 39 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.12 1.03 8.04 -52.49 -0.42 0.61 16 41 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.12 1.00 6.91 -52.49 -0.36 0.63 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -29.72 353.72 -9.42 -39.14 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.82 Total: 8.36 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.90 Total: -8.45 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.10 Total: -47.30 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.72 -9.42 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457393113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.827 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds