Wall clock time and date at job start Tue Mar 31 2020 07:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46828 * 2 1 4 4 N 1.46496 * 109.47026 * 120.00511 * 2 1 3 5 5 C 1.34781 * 120.00045 * 274.99640 * 4 2 1 6 6 O 1.21589 * 119.99631 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00150 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99682 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46736 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.47017 * 299.99505 * 9 8 7 11 11 C 1.52991 * 109.47616 * 59.99429 * 9 8 7 12 12 C 1.50705 * 109.47248 * 179.97438 * 9 8 7 13 13 H 1.08003 * 119.99518 * 357.00371 * 12 9 8 14 14 C 1.37870 * 119.99959 * 177.00009 * 12 9 8 15 15 N 1.31517 * 120.00438 * 5.54323 * 14 12 9 16 16 Si 1.86801 * 119.99736 * 185.53802 * 14 12 9 17 17 H 1.48496 * 109.46972 * 85.00524 * 16 14 12 18 18 H 1.48496 * 109.47151 * 205.00335 * 16 14 12 19 19 H 1.48502 * 109.47366 * 325.00403 * 16 14 12 20 20 C 1.50696 * 109.47039 * 240.00413 * 2 1 3 21 21 C 1.38236 * 120.00397 * 99.99811 * 20 2 1 22 22 C 1.38230 * 120.00249 * 179.97438 * 21 20 2 23 23 C 1.38237 * 120.00143 * 359.97438 * 22 21 20 24 24 C 1.38231 * 119.99820 * 359.97438 * 23 22 21 25 25 C 1.38237 * 119.99985 * 279.91066 * 20 2 1 26 26 H 1.09000 * 109.47240 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47389 * 299.99776 * 1 2 3 28 28 H 1.09002 * 109.47754 * 59.99621 * 1 2 3 29 29 H 0.96999 * 120.00235 * 95.00091 * 4 2 1 30 30 H 0.96999 * 120.00130 * 0.02562 * 7 5 4 31 31 H 1.09002 * 109.46630 * 299.99281 * 8 7 5 32 32 H 1.08990 * 109.47337 * 59.99930 * 8 7 5 33 33 H 1.09005 * 109.47086 * 53.93362 * 10 9 8 34 34 H 1.09002 * 109.47454 * 173.93753 * 10 9 8 35 35 H 1.09004 * 109.46818 * 293.94080 * 10 9 8 36 36 H 1.08997 * 109.47196 * 60.00337 * 11 9 8 37 37 H 1.09004 * 109.47219 * 180.02562 * 11 9 8 38 38 H 1.08998 * 109.47354 * 300.00123 * 11 9 8 39 39 H 0.96996 * 119.99664 * 179.97438 * 15 14 12 40 40 H 1.08001 * 119.99895 * 0.25364 * 21 20 2 41 41 H 1.08006 * 119.99704 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.99867 * 179.97438 * 23 22 21 43 43 H 1.08007 * 119.99928 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.99932 * 0.08358 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8575 1.1612 2.4119 7 7 2.5968 -0.6537 3.4574 8 6 2.7362 0.0770 4.7195 9 6 3.2619 -0.8690 5.8010 10 6 2.2789 -2.0265 5.9878 11 6 4.6247 -1.4206 5.3778 12 6 3.4059 -0.1173 7.0992 13 1 3.1946 0.9412 7.1366 14 6 3.8074 -0.7808 8.2391 15 7 4.1694 -2.0434 8.1721 16 14 3.8372 0.1136 9.8788 17 1 2.4874 0.0617 10.4956 18 1 4.8192 -0.5396 10.7812 19 1 4.2289 1.5297 9.6633 20 6 2.0323 -0.7103 -1.2305 21 6 2.4587 0.0195 -2.3243 22 6 2.9199 -0.6320 -3.4528 23 6 2.9553 -2.0135 -3.4874 24 6 2.5300 -2.7434 -2.3932 25 6 2.0684 -2.0918 -1.2648 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 2.2490 -1.6318 1.1525 30 1 2.8281 -1.5947 3.4136 31 1 3.4369 0.9013 4.5865 32 1 1.7654 0.4702 5.0208 33 1 2.0922 -2.5035 5.0256 34 1 2.7028 -2.7554 6.6786 35 1 1.3412 -1.6452 6.3922 36 1 5.3250 -0.5960 5.2448 37 1 4.9989 -2.0949 6.1481 38 1 4.5209 -1.9642 4.4387 39 1 4.4521 -2.5100 8.9741 40 1 2.4356 1.0989 -2.2955 41 1 3.2526 -0.0617 -4.3075 42 1 3.3153 -2.5225 -4.3692 43 1 2.5572 -3.8227 -2.4203 44 1 1.7354 -2.6620 -0.4102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457393113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:47 Heat of formation + Delta-G solvation = -32.956434 kcal Electronic energy + Delta-G solvation = -22899.234443 eV Core-core repulsion = 19622.368047 eV Total energy + Delta-G solvation = -3276.866397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31893 -40.09548 -38.27301 -36.45818 -34.99423 -33.13405 -32.04359 -31.67667 -30.01331 -27.55460 -27.43827 -26.65670 -24.72834 -23.63414 -22.23687 -21.34530 -20.55736 -19.71238 -17.96539 -17.74370 -17.04941 -16.64530 -16.46525 -16.10087 -15.83255 -15.30866 -15.09159 -14.86195 -14.70122 -14.44238 -14.22415 -14.03026 -13.96248 -13.36023 -13.20195 -13.07632 -13.05856 -12.69332 -12.59262 -12.53370 -12.22699 -12.13780 -11.94049 -11.73617 -11.46914 -11.36149 -11.13321 -10.70254 -10.40413 -10.31911 -9.80928 -9.74347 -9.60988 -8.02255 -6.16513 0.39723 0.51267 1.43586 1.45957 1.53561 1.81803 2.21541 2.47078 2.89590 3.21782 3.42194 3.60306 3.97089 4.15012 4.30750 4.32928 4.34112 4.43721 4.55073 4.62967 4.66149 4.72273 4.76691 4.91001 5.02200 5.06009 5.06821 5.11887 5.16480 5.20982 5.24029 5.39170 5.45750 5.57717 5.64041 5.64512 5.68063 5.69348 5.73808 6.06310 6.12341 6.15055 6.22614 6.44308 6.87497 7.15928 7.50786 7.64535 8.97387 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032388 B = 0.002957 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.306643 B = 9465.915930 C = 9835.261080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.203 3.797 3 H 0.074 0.926 4 N -0.729 5.729 5 C 0.698 3.302 6 O -0.639 6.639 7 N -0.726 5.726 8 C 0.168 3.832 9 C 0.053 3.947 10 C -0.117 4.117 11 C -0.119 4.119 12 C -0.531 4.531 13 H 0.044 0.956 14 C 0.030 3.970 15 N -0.899 5.899 16 Si 0.944 3.056 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.276 1.276 20 C -0.099 4.099 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.122 4.122 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.406 0.594 30 H 0.405 0.595 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.062 0.938 38 H 0.035 0.965 39 H 0.260 0.740 40 H 0.128 0.872 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.624 -4.127 -22.855 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.098 3.902 3 H 0.092 0.908 4 N -0.387 5.387 5 C 0.398 3.602 6 O -0.521 6.521 7 N -0.382 5.382 8 C 0.044 3.956 9 C 0.052 3.948 10 C -0.175 4.175 11 C -0.177 4.177 12 C -0.569 4.569 13 H 0.062 0.938 14 C -0.170 4.170 15 N -0.537 5.537 16 Si 0.771 3.229 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.202 1.202 20 C -0.100 4.100 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.140 4.140 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.243 0.757 30 H 0.241 0.759 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.146 0.854 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.813 -3.207 -22.661 23.202 hybrid contribution 0.256 -0.109 1.303 1.332 sum -3.557 -3.316 -21.359 21.905 Atomic orbital electron populations 1.22117 0.93847 1.02815 1.02180 1.19575 0.94358 0.95598 0.80706 0.90783 1.45149 1.71600 1.14032 1.07878 1.16166 0.78193 0.84727 0.81102 1.90852 1.59331 1.16440 1.85454 1.45212 1.69781 1.14310 1.08854 1.21103 0.98449 0.94306 0.81756 1.18349 0.92813 0.92391 0.91253 1.21636 0.97413 0.99341 0.99108 1.21671 0.97777 0.99387 0.98819 1.21266 1.46155 0.95019 0.94482 0.93751 1.25439 0.94581 0.95693 1.01327 1.69927 1.44546 1.10304 1.28945 0.85788 0.77744 0.78810 0.80551 1.20400 1.20847 1.20154 1.19879 1.00646 0.94521 0.94934 1.21211 0.98853 1.00531 0.93420 1.21428 0.99159 0.95211 0.98255 1.21531 0.99218 0.94271 0.99274 1.21446 0.98290 1.01159 0.93092 1.21130 1.00151 0.93436 0.99281 0.91298 0.93891 0.90174 0.75653 0.75868 0.94796 0.94581 0.94341 0.92136 0.96336 0.96471 0.91880 0.94574 0.93035 0.85371 0.83999 0.83860 0.83926 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.46 71.98 0.68 -2.60 16 2 C 0.20 4.78 2.78 44.24 0.12 4.91 16 3 H 0.07 2.07 7.44 -2.39 -0.02 2.05 16 4 N -0.73 -18.90 5.03 -461.42 -2.32 -21.22 16 5 C 0.70 24.87 8.53 179.05 1.53 26.40 16 6 O -0.64 -28.21 16.01 -4.00 -0.06 -28.27 16 7 N -0.73 -25.83 4.91 -478.54 -2.35 -28.18 16 8 C 0.17 7.36 4.50 86.38 0.39 7.75 16 9 C 0.05 2.46 0.50 -52.93 -0.03 2.43 16 10 C -0.12 -5.22 8.03 71.98 0.58 -4.64 16 11 C -0.12 -5.33 8.10 71.98 0.58 -4.74 16 12 C -0.53 -28.39 8.01 25.60 0.20 -28.19 16 13 H 0.04 2.43 7.75 -2.91 -0.02 2.41 16 14 C 0.03 1.57 5.13 84.65 0.43 2.00 16 15 N -0.90 -48.12 9.45 21.45 0.20 -47.92 16 16 Si 0.94 42.91 29.54 68.60 2.03 44.94 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 C -0.10 -1.91 4.95 -19.87 -0.10 -2.01 16 21 C -0.12 -2.14 9.67 22.27 0.22 -1.92 16 22 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 23 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 24 C -0.12 -1.70 10.05 22.27 0.22 -1.47 16 25 C -0.12 -2.00 9.06 22.27 0.20 -1.80 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.41 8.24 6.88 -92.71 -0.64 7.60 16 30 H 0.40 12.37 6.17 -92.71 -0.57 11.80 16 31 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.42 6.71 -2.38 -0.02 1.40 16 34 H 0.06 2.96 6.25 -2.39 -0.01 2.94 16 35 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 3.13 6.10 -2.38 -0.01 3.12 16 38 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 39 H 0.26 13.42 8.31 -92.71 -0.77 12.64 16 40 H 0.13 2.04 8.04 -2.91 -0.02 2.02 16 41 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 43 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 44 H 0.13 1.80 6.91 -2.91 -0.02 1.78 16 Total: -1.00 -64.16 353.72 2.77 -61.39 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.21 Total: 26.10 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 5.48 Total: -6.84 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -4.47 Total: -97.32 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.06 Total: -28.27 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -64.16 2.77 -61.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457393113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.438 kcal (2) G-P(sol) polarization free energy of solvation -64.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds