Wall clock time and date at job start Tue Mar 31 2020 07:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 C 1.52995 * 109.47023 * 119.99594 * 2 1 3 5 5 C 1.52999 * 109.47075 * 185.00349 * 4 2 1 6 6 C 1.53005 * 109.47395 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47438 * 179.97438 * 6 5 4 8 8 C 1.38676 * 120.41808 * 269.72187 * 7 6 5 9 9 C 1.38625 * 118.41757 * 179.78198 * 8 7 6 10 10 C 1.38232 * 119.16376 * 0.51251 * 9 8 7 11 11 N 1.31849 * 120.76201 * 359.72360 * 10 9 8 12 12 C 1.31887 * 121.72682 * 0.02562 * 11 10 9 13 13 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 2 1 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 2 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 2 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.50697 * 109.47491 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99437 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00278 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00172 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00140 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47213 * 89.99904 * 22 20 18 24 24 H 1.48497 * 109.47216 * 209.99799 * 22 20 18 25 25 H 1.48504 * 109.47159 * 330.00245 * 22 20 18 26 26 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 28 28 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 29 29 H 1.09000 * 109.47218 * 305.00067 * 4 2 1 30 30 H 1.09000 * 109.47293 * 65.00233 * 4 2 1 31 31 H 1.09000 * 109.46867 * 299.99933 * 5 4 2 32 32 H 1.09000 * 109.47154 * 59.99799 * 5 4 2 33 33 H 1.09001 * 109.46639 * 300.00199 * 6 5 4 34 34 H 1.09005 * 109.47007 * 59.99315 * 6 5 4 35 35 H 1.07991 * 120.78964 * 0.02562 * 8 7 6 36 36 H 1.08006 * 120.42127 * 180.21602 * 9 8 7 37 37 H 1.07996 * 119.61642 * 179.74819 * 10 9 8 38 38 H 1.07994 * 119.61937 * 180.02562 * 12 11 10 39 39 H 0.97000 * 119.99484 * 264.99304 * 13 2 1 40 40 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 41 41 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 42 42 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 43 43 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 44 44 H 0.96998 * 120.00586 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0749 -1.3348 2.5627 7 6 5.5768 -1.2290 2.6259 8 6 6.3744 -2.1969 2.0343 9 6 7.7512 -2.0560 2.1136 10 6 8.2795 -0.9688 2.7842 11 7 7.4904 -0.0702 3.3392 12 6 6.1766 -0.1694 3.2794 13 7 2.0183 -0.6906 -1.1961 14 6 2.1471 -0.0183 -2.3571 15 8 1.8582 1.1583 -2.4117 16 6 2.6435 -0.7303 -3.5891 17 6 2.6898 0.2514 -4.7617 18 6 3.1868 -0.4604 -5.9935 19 1 3.4444 -1.5081 -5.9447 20 6 3.3127 0.2259 -7.1826 21 7 3.7460 -0.3954 -8.2577 22 14 2.8665 2.0378 -7.2671 23 1 4.0644 2.8577 -6.9540 24 1 2.3854 2.3660 -8.6331 25 1 1.7952 2.3303 -6.2812 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7714 1.2057 31 1 3.9994 -1.0727 0.4261 32 1 3.8531 0.4372 1.3573 33 1 3.6402 -0.8756 3.4506 34 1 3.7865 -2.3851 2.5187 35 1 5.9334 -3.0383 1.5206 36 1 8.4029 -2.7889 1.6613 37 1 9.3511 -0.8540 2.8539 38 1 5.5624 0.5866 3.7458 39 1 2.2491 -1.6318 -1.1525 40 1 3.6436 -1.1225 -3.4039 41 1 1.9697 -1.5525 -3.8299 42 1 1.6897 0.6435 -4.9469 43 1 3.3636 1.0736 -4.5208 44 1 3.8350 0.0874 -9.0943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457945406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:56 Heat of formation + Delta-G solvation = -37.574932 kcal Electronic energy + Delta-G solvation = -22099.742037 eV Core-core repulsion = 18822.675367 eV Total energy + Delta-G solvation = -3277.066670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = -2.01 seconds Orbital eigenvalues (eV) -40.46500 -39.49732 -36.86604 -34.71766 -33.46001 -32.46345 -31.83841 -31.09571 -30.00788 -26.80244 -26.06130 -23.84775 -23.33339 -21.85800 -21.34390 -20.58182 -19.70349 -17.39182 -17.22420 -16.75793 -16.21044 -15.97317 -15.41523 -15.04958 -14.61056 -14.42557 -14.11798 -13.93664 -13.68285 -13.36253 -13.31834 -13.25047 -12.70965 -12.55257 -12.42859 -12.17434 -11.99577 -11.82450 -11.40499 -11.21319 -11.05850 -10.94800 -10.84338 -10.14873 -10.05214 -10.03088 -9.77309 -9.70571 -9.22190 -9.20802 -9.14017 -8.84315 -8.50084 -6.02608 -4.01260 0.81940 1.00114 3.15992 3.38478 3.44832 3.49852 3.51763 3.56109 4.13519 4.35055 4.47034 4.51542 4.55558 4.67051 4.71803 4.84294 4.89875 5.09773 5.19556 5.23828 5.32984 5.33080 5.44286 5.45123 5.50918 5.55289 5.59467 5.69063 5.75731 5.83949 5.98842 6.04706 6.05938 6.10469 6.12630 6.20812 6.42195 6.69948 6.74177 7.37787 7.44784 7.69655 7.78213 7.83832 8.51016 8.70158 9.00485 9.60637 11.10245 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.003170 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.626921 B = 8831.996764 C =10151.476806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.085 0.915 4 C -0.124 4.124 5 C -0.116 4.116 6 C -0.076 4.076 7 C -0.131 4.131 8 C -0.074 4.074 9 C -0.169 4.169 10 C 0.090 3.910 11 N -0.485 5.485 12 C 0.099 3.901 13 N -0.736 5.736 14 C 0.510 3.490 15 O -0.541 6.541 16 C -0.123 4.123 17 C 0.002 3.998 18 C -0.525 4.525 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.904 5.904 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.261 1.261 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.396 0.604 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.023 0.977 43 H 0.018 0.982 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.153 -5.635 26.360 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.103 0.897 4 C -0.162 4.162 5 C -0.153 4.153 6 C -0.114 4.114 7 C -0.133 4.133 8 C -0.100 4.100 9 C -0.189 4.189 10 C -0.067 4.067 11 N -0.193 5.193 12 C -0.058 4.058 13 N -0.390 5.390 14 C 0.299 3.701 15 O -0.417 6.417 16 C -0.163 4.163 17 C -0.036 4.036 18 C -0.562 4.562 19 H 0.090 0.910 20 C -0.133 4.133 21 N -0.543 5.543 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.185 1.185 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.230 0.770 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.362 -4.021 26.563 26.900 hybrid contribution -0.369 -0.348 -0.664 0.835 sum 0.993 -4.368 25.899 26.284 Atomic orbital electron populations 1.22175 0.95637 1.01902 1.02425 1.20882 0.93769 0.97699 0.84225 0.89699 1.21895 0.95502 1.01191 0.97629 1.21608 0.95186 1.01190 0.97355 1.20580 0.89746 1.01814 0.99246 1.20948 0.97314 0.96098 0.98967 1.21541 0.93585 0.98308 0.96521 1.22187 0.95990 0.99923 1.00789 1.22772 1.00101 0.90193 0.93640 1.67679 1.05618 1.27843 1.18137 1.22686 0.90849 0.96215 0.96081 1.46255 1.69087 1.13845 1.09832 1.21506 0.76349 0.87566 0.84715 1.90646 1.49441 1.16558 1.85061 1.21662 1.01599 1.00576 0.92433 1.19357 0.97694 0.94422 0.92124 1.21118 1.44206 0.98303 0.92616 0.90985 1.24972 0.94428 0.98308 0.95552 1.69912 1.46988 1.36739 1.00669 0.86795 0.79802 0.85714 0.77241 1.20245 1.21449 1.18529 0.92638 0.92090 0.91905 0.90517 0.91318 0.91288 0.91553 0.90608 0.90691 0.84789 0.84703 0.82855 0.82969 0.76979 0.89810 0.89707 0.95871 0.96337 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.37 16 2 C 0.14 1.52 2.57 -67.93 -0.17 1.34 16 3 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 4 C -0.12 -0.90 4.75 -26.73 -0.13 -1.03 16 5 C -0.12 -0.91 5.08 -26.73 -0.14 -1.04 16 6 C -0.08 -0.48 5.37 -27.88 -0.15 -0.63 16 7 C -0.13 -1.09 5.15 -104.48 -0.54 -1.63 16 8 C -0.07 -0.59 9.86 -39.28 -0.39 -0.98 16 9 C -0.17 -1.35 10.11 -39.44 -0.40 -1.75 16 10 C 0.09 0.82 11.18 -17.55 -0.20 0.62 16 11 N -0.48 -5.31 10.36 -13.25 -0.14 -5.44 16 12 C 0.10 0.93 10.86 -17.55 -0.19 0.74 16 13 N -0.74 -9.26 4.53 -53.81 -0.24 -9.51 16 14 C 0.51 9.12 7.79 -10.98 -0.09 9.03 16 15 O -0.54 -11.90 15.65 5.55 0.09 -11.81 16 16 C -0.12 -2.37 5.64 -27.88 -0.16 -2.53 16 17 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 18 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 19 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 21 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 22 Si 0.88 22.78 27.47 -169.99 -4.67 18.12 16 23 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.62 7.75 -51.93 -0.40 0.22 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.40 3.88 8.60 -40.82 -0.35 3.53 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 43 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -35.52 367.51 -8.77 -44.30 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.41 Total: -1.07 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.71 Total: -12.73 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.39 Total: -42.34 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.12 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.52 -8.77 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457945406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.722 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -2.01 seconds