Wall clock time and date at job start Tue Mar 31 2020 07:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 C 1.52995 * 109.47023 * 119.99594 * 2 1 3 5 5 C 1.52999 * 109.47075 * 185.00349 * 4 2 1 6 6 C 1.53005 * 109.47395 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47438 * 179.97438 * 6 5 4 8 8 C 1.38676 * 120.41808 * 269.72187 * 7 6 5 9 9 C 1.38625 * 118.41757 * 179.78198 * 8 7 6 10 10 C 1.38232 * 119.16376 * 0.51251 * 9 8 7 11 11 N 1.31849 * 120.76201 * 359.72360 * 10 9 8 12 12 C 1.31887 * 121.72682 * 0.02562 * 11 10 9 13 13 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 2 1 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 2 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 2 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.50697 * 109.47491 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99437 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00278 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00172 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00140 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47213 * 89.99904 * 22 20 18 24 24 H 1.48497 * 109.47216 * 209.99799 * 22 20 18 25 25 H 1.48504 * 109.47159 * 330.00245 * 22 20 18 26 26 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 28 28 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 29 29 H 1.09000 * 109.47218 * 305.00067 * 4 2 1 30 30 H 1.09000 * 109.47293 * 65.00233 * 4 2 1 31 31 H 1.09000 * 109.46867 * 299.99933 * 5 4 2 32 32 H 1.09000 * 109.47154 * 59.99799 * 5 4 2 33 33 H 1.09001 * 109.46639 * 300.00199 * 6 5 4 34 34 H 1.09005 * 109.47007 * 59.99315 * 6 5 4 35 35 H 1.07991 * 120.78964 * 0.02562 * 8 7 6 36 36 H 1.08006 * 120.42127 * 180.21602 * 9 8 7 37 37 H 1.07996 * 119.61642 * 179.74819 * 10 9 8 38 38 H 1.07994 * 119.61937 * 180.02562 * 12 11 10 39 39 H 0.97000 * 119.99484 * 264.99304 * 13 2 1 40 40 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 41 41 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 42 42 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 43 43 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 44 44 H 0.96998 * 120.00586 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0749 -1.3348 2.5627 7 6 5.5768 -1.2290 2.6259 8 6 6.3744 -2.1969 2.0343 9 6 7.7512 -2.0560 2.1136 10 6 8.2795 -0.9688 2.7842 11 7 7.4904 -0.0702 3.3392 12 6 6.1766 -0.1694 3.2794 13 7 2.0183 -0.6906 -1.1961 14 6 2.1471 -0.0183 -2.3571 15 8 1.8582 1.1583 -2.4117 16 6 2.6435 -0.7303 -3.5891 17 6 2.6898 0.2514 -4.7617 18 6 3.1868 -0.4604 -5.9935 19 1 3.4444 -1.5081 -5.9447 20 6 3.3127 0.2259 -7.1826 21 7 3.7460 -0.3954 -8.2577 22 14 2.8665 2.0378 -7.2671 23 1 4.0644 2.8577 -6.9540 24 1 2.3854 2.3660 -8.6331 25 1 1.7952 2.3303 -6.2812 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7714 1.2057 31 1 3.9994 -1.0727 0.4261 32 1 3.8531 0.4372 1.3573 33 1 3.6402 -0.8756 3.4506 34 1 3.7865 -2.3851 2.5187 35 1 5.9334 -3.0383 1.5206 36 1 8.4029 -2.7889 1.6613 37 1 9.3511 -0.8540 2.8539 38 1 5.5624 0.5866 3.7458 39 1 2.2491 -1.6318 -1.1525 40 1 3.6436 -1.1225 -3.4039 41 1 1.9697 -1.5525 -3.8299 42 1 1.6897 0.6435 -4.9469 43 1 3.3636 1.0736 -4.5208 44 1 3.8350 0.0874 -9.0943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457945406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:51 Heat of formation + Delta-G solvation = -60.404992 kcal Electronic energy + Delta-G solvation = -22100.732023 eV Core-core repulsion = 18822.675367 eV Total energy + Delta-G solvation = -3278.056656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.10144 -40.79010 -37.81886 -35.62456 -35.41911 -33.52186 -33.06068 -32.36905 -30.90245 -27.97768 -27.39728 -24.47328 -24.20689 -23.33683 -21.95704 -21.64122 -21.20507 -19.21900 -17.97715 -17.69058 -17.35025 -17.11507 -16.45777 -16.27978 -16.04812 -15.37268 -15.17666 -14.92171 -14.71311 -14.64622 -14.46924 -14.13826 -13.95319 -13.87987 -13.40780 -13.22220 -13.00022 -12.90529 -12.61575 -12.53362 -12.10642 -11.97733 -11.88846 -11.80345 -11.74748 -11.49023 -11.40603 -10.79296 -10.69332 -10.67568 -10.35745 -10.01295 -9.81553 -8.32738 -6.35374 0.19882 0.37824 1.31637 1.33562 1.48746 1.74628 2.33649 2.34790 2.87750 3.02959 3.55473 3.71514 3.90284 3.94842 4.07336 4.11378 4.12735 4.19421 4.25631 4.39984 4.43569 4.49449 4.58257 4.63010 4.69359 4.80387 4.85968 4.91927 4.97265 4.98388 5.06087 5.12795 5.22854 5.26040 5.32930 5.34615 5.44343 5.47004 5.47816 5.60232 5.69115 5.83712 6.22670 6.67516 6.71088 7.05257 7.30123 7.39607 8.82922 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.003170 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.626921 B = 8831.996764 C =10151.476806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 H 0.057 0.943 4 C -0.111 4.111 5 C -0.113 4.113 6 C -0.067 4.067 7 C -0.135 4.135 8 C -0.083 4.083 9 C -0.173 4.173 10 C 0.071 3.929 11 N -0.518 5.518 12 C 0.079 3.921 13 N -0.712 5.712 14 C 0.513 3.487 15 O -0.589 6.589 16 C -0.118 4.118 17 C 0.006 3.994 18 C -0.528 4.528 19 H 0.051 0.949 20 C 0.014 3.986 21 N -0.943 5.943 22 Si 0.937 3.063 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.263 1.263 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.026 0.974 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.414 0.586 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.008 0.992 43 H 0.005 0.995 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 -6.690 28.266 29.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 H 0.076 0.924 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.105 4.105 7 C -0.137 4.137 8 C -0.109 4.109 9 C -0.192 4.192 10 C -0.086 4.086 11 N -0.227 5.227 12 C -0.078 4.078 13 N -0.365 5.365 14 C 0.301 3.699 15 O -0.469 6.469 16 C -0.157 4.157 17 C -0.032 4.032 18 C -0.566 4.566 19 H 0.069 0.931 20 C -0.184 4.184 21 N -0.584 5.584 22 Si 0.762 3.238 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.187 1.187 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.046 0.954 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.172 0.828 36 H 0.175 0.825 37 H 0.186 0.814 38 H 0.180 0.820 39 H 0.251 0.749 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.026 0.974 43 H 0.024 0.976 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.555 -5.125 28.512 28.974 hybrid contribution -0.088 -0.104 -1.222 1.230 sum 0.467 -5.229 27.290 27.790 Atomic orbital electron populations 1.22138 0.94951 1.02839 1.01786 1.21075 0.94277 0.96789 0.84796 0.92447 1.21834 0.94782 1.02199 0.96053 1.21546 0.95670 1.00146 0.97693 1.20558 0.88259 1.02813 0.98881 1.21182 0.98532 0.95620 0.98360 1.21909 0.93760 0.98878 0.96378 1.22485 0.96604 0.99896 1.00236 1.23145 1.00935 0.90516 0.93956 1.67650 1.06593 1.29057 1.19379 1.22985 0.90749 0.97194 0.96859 1.46021 1.67134 1.14524 1.08833 1.21142 0.76214 0.86837 0.85693 1.90634 1.51906 1.18485 1.85894 1.21492 1.03287 0.99589 0.91376 1.19205 0.96026 0.95023 0.92982 1.21437 1.43458 0.97656 0.94081 0.93079 1.25790 0.94618 1.02551 0.95421 1.70018 1.48433 1.38535 1.01378 0.85847 0.79622 0.80779 0.77571 1.19474 1.20231 1.18710 0.90834 0.89901 0.95438 0.88420 0.88937 0.92506 0.93462 0.89217 0.88844 0.82753 0.82539 0.81354 0.81996 0.74876 0.88189 0.88023 0.97356 0.97613 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.48 71.98 0.68 -2.31 16 2 C 0.13 2.67 2.57 44.99 0.12 2.78 16 3 H 0.06 1.50 7.58 -2.38 -0.02 1.48 16 4 C -0.11 -1.20 4.75 30.59 0.15 -1.05 16 5 C -0.11 -1.48 5.08 30.60 0.16 -1.33 16 6 C -0.07 -0.64 5.37 29.85 0.16 -0.48 16 7 C -0.14 -2.01 5.15 -19.77 -0.10 -2.11 16 8 C -0.08 -1.18 9.86 22.47 0.22 -0.96 16 9 C -0.17 -2.52 10.11 22.36 0.23 -2.29 16 10 C 0.07 1.26 11.18 84.69 0.95 2.20 16 11 N -0.52 -11.33 10.36 -195.85 -2.03 -13.36 16 12 C 0.08 1.44 10.86 84.67 0.92 2.36 16 13 N -0.71 -16.46 4.53 -442.53 -2.00 -18.47 16 14 C 0.51 17.93 7.79 87.66 0.68 18.61 16 15 O -0.59 -26.12 15.65 -3.04 -0.05 -26.17 16 16 C -0.12 -4.43 5.64 29.85 0.17 -4.26 16 17 C 0.01 0.28 3.33 29.85 0.10 0.38 16 18 C -0.53 -30.70 9.66 25.60 0.25 -30.46 16 19 H 0.05 3.11 7.99 -2.91 -0.02 3.08 16 20 C 0.01 0.83 5.47 84.65 0.46 1.30 16 21 N -0.94 -59.33 13.96 21.44 0.30 -59.03 16 22 Si 0.94 47.36 27.47 68.60 1.88 49.24 16 23 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.26 -13.26 6.54 99.48 0.65 -12.61 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.88 7.75 -2.39 -0.02 0.87 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.64 8.09 -2.39 -0.02 0.62 16 34 H 0.09 0.60 8.09 -2.38 -0.02 0.58 16 35 H 0.15 1.45 8.06 -2.92 -0.02 1.42 16 36 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.41 6.75 8.60 -92.71 -0.80 5.95 16 40 H 0.10 3.42 8.14 -2.38 -0.02 3.40 16 41 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.01 0.43 7.15 -2.38 -0.02 0.41 16 43 H 0.01 0.29 7.53 -2.39 -0.02 0.27 16 44 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -79.01 367.51 3.35 -75.66 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.11 Total: 9.73 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 5.13 Total: -17.60 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -3.73 Total: -90.86 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.05 Total: -26.17 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.88 Total: 49.24 kcal Total: -79.01 3.35 -75.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457945406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.254 kcal (2) G-P(sol) polarization free energy of solvation -79.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds