Wall clock time and date at job start Tue Mar 31 2020 07:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.50522 * 2 1 4 4 C 1.53090 * 109.51067 * 239.86985 * 2 1 3 5 5 N 1.47015 * 109.26059 * 183.21697 * 4 2 1 6 6 C 1.39680 * 110.99905 * 182.39300 * 5 4 2 7 7 C 1.38930 * 120.07326 * 300.33610 * 6 5 4 8 8 C 1.38082 * 119.92755 * 179.97438 * 7 6 5 9 9 C 1.38315 * 120.06791 * 0.02562 * 8 7 6 10 10 C 1.38258 * 120.15413 * 359.97438 * 9 8 7 11 11 C 1.38134 * 120.07263 * 359.74519 * 10 9 8 12 12 C 1.50701 * 120.03348 * 180.27757 * 11 10 9 13 13 N 1.46897 * 109.46796 * 258.63614 * 12 11 10 14 14 C 1.46904 * 111.00104 * 184.64752 * 13 12 11 15 15 C 1.50698 * 109.47334 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00056 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99838 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99761 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00182 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47102 * 89.99565 * 19 17 15 21 21 H 1.48502 * 109.46936 * 209.99880 * 19 17 15 22 22 H 1.48496 * 109.46973 * 329.99399 * 19 17 15 23 23 C 1.47007 * 110.75560 * 58.61423 * 5 4 2 24 24 C 1.53106 * 109.25700 * 301.38738 * 23 5 4 25 25 O 1.43013 * 109.26050 * 56.84732 * 24 23 5 26 26 H 1.09006 * 109.47481 * 299.91512 * 1 2 3 27 27 H 1.09000 * 109.47823 * 59.91615 * 1 2 3 28 28 H 1.09001 * 109.47157 * 179.91862 * 1 2 3 29 29 H 1.09004 * 109.50709 * 303.14711 * 4 2 1 30 30 H 1.08997 * 109.50651 * 63.27887 * 4 2 1 31 31 H 1.08008 * 120.03663 * 359.97438 * 7 6 5 32 32 H 1.07990 * 119.96520 * 179.97438 * 8 7 6 33 33 H 1.07997 * 119.91858 * 179.97438 * 9 8 7 34 34 H 1.07995 * 119.96462 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.47596 * 18.63704 * 12 11 10 36 36 H 1.09007 * 109.46666 * 138.64028 * 12 11 10 37 37 H 1.00902 * 111.00533 * 308.59471 * 13 12 11 38 38 H 1.09001 * 109.46726 * 299.99902 * 14 13 12 39 39 H 1.09003 * 109.46755 * 59.99671 * 14 13 12 40 40 H 0.97007 * 119.99613 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.50790 * 181.45094 * 23 5 4 42 42 H 1.09002 * 109.51080 * 61.31655 * 23 5 4 43 43 H 1.08996 * 109.50440 * 176.78286 * 24 23 5 44 44 H 1.09002 * 109.50307 * 296.91357 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7243 -1.2480 5 7 3.5093 -0.7888 -1.2040 6 6 4.0183 -1.3963 -2.3542 7 6 3.6528 -2.6980 -2.6739 8 6 4.1575 -3.2954 -3.8120 9 6 5.0263 -2.5995 -4.6329 10 6 5.3921 -1.3039 -4.3176 11 6 4.8864 -0.6984 -3.1838 12 6 5.2808 0.7160 -2.8443 13 7 6.3056 0.6993 -1.7921 14 6 6.6357 2.0630 -1.3570 15 6 7.6874 2.0058 -0.2791 16 1 8.0718 1.0517 0.0502 17 6 8.1587 3.1714 0.2867 18 7 9.0761 3.1214 1.2277 19 14 7.4933 4.8215 -0.2823 20 1 6.3146 5.1908 0.5419 21 1 8.5463 5.8580 -0.1328 22 1 7.0903 4.7276 -1.7085 23 6 3.9640 -1.4883 0.0064 24 6 3.4334 -0.7562 1.2420 25 8 2.0075 -0.6757 1.1666 26 1 -0.3634 0.5125 0.8908 27 1 -0.3635 0.5151 -0.8892 28 1 -0.3633 -1.0277 -0.0015 29 1 1.6332 -1.7348 -1.2752 30 1 1.7273 -0.1803 -2.1388 31 1 2.9747 -3.2420 -2.0331 32 1 3.8741 -4.3073 -4.0609 33 1 5.4198 -3.0692 -5.5222 34 1 6.0703 -0.7632 -4.9610 35 1 5.6802 1.2050 -3.7328 36 1 4.4061 1.2622 -2.4911 37 1 6.0128 0.1316 -1.0110 38 1 7.0149 2.6332 -2.2051 39 1 5.7405 2.5461 -0.9654 40 1 9.4075 3.9415 1.6260 41 1 5.0536 -1.5018 0.0314 42 1 3.5867 -2.5109 -0.0006 43 1 3.7200 -1.3032 2.1401 44 1 3.8533 0.2491 1.2777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459511232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:43 Heat of formation + Delta-G solvation = -29.462613 kcal Electronic energy + Delta-G solvation = -23872.523530 eV Core-core repulsion = 20595.808637 eV Total energy + Delta-G solvation = -3276.714893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55236 -39.73631 -37.04848 -36.55224 -34.65400 -33.82462 -32.46584 -31.17681 -29.48062 -28.82279 -26.73739 -25.57709 -24.21617 -23.12806 -23.03907 -21.67365 -21.22851 -19.01796 -18.17419 -17.45718 -17.07672 -16.84771 -16.49120 -16.34440 -16.08458 -15.66408 -15.57654 -15.38688 -14.99996 -14.62931 -14.43724 -14.24944 -13.68247 -13.62820 -13.38798 -13.20318 -13.09246 -12.91208 -12.74550 -12.62062 -12.45697 -12.20896 -12.19141 -11.92644 -11.81378 -11.51700 -11.44213 -10.81816 -10.71207 -9.78591 -9.61277 -9.51901 -9.05635 -8.30055 -6.33869 0.34457 0.44620 1.33511 1.35248 1.46801 2.33636 2.59328 2.75961 2.78546 3.04122 3.71860 3.77463 3.85427 3.96623 3.99003 4.06023 4.09553 4.13837 4.19239 4.40454 4.44104 4.47769 4.51325 4.62093 4.65718 4.70881 4.73160 4.80080 4.85493 4.87669 4.94677 5.04471 5.08657 5.12640 5.23583 5.48653 5.51534 5.55603 5.65509 5.76916 5.93490 5.95896 6.13835 6.37914 6.59767 6.65930 6.77200 7.30992 8.86672 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.005579 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.528408 B = 5017.505980 C = 6449.807500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.051 0.949 4 C 0.037 3.963 5 N -0.514 5.514 6 C 0.080 3.920 7 C -0.152 4.152 8 C -0.112 4.112 9 C -0.120 4.120 10 C -0.108 4.108 11 C -0.071 4.071 12 C 0.110 3.890 13 N -0.677 5.677 14 C 0.178 3.822 15 C -0.523 4.523 16 H 0.036 0.964 17 C 0.011 3.989 18 N -0.946 5.946 19 Si 0.948 3.052 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.252 1.252 23 C 0.031 3.969 24 C 0.065 3.935 25 O -0.392 6.392 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.131 0.869 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.335 0.665 38 H 0.024 0.976 39 H -0.020 1.020 40 H 0.267 0.733 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.117 0.883 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.323 -11.424 -9.445 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.024 3.976 3 H 0.069 0.931 4 C -0.089 4.089 5 N -0.236 5.236 6 C -0.014 4.014 7 C -0.172 4.172 8 C -0.131 4.131 9 C -0.137 4.137 10 C -0.127 4.127 11 C -0.072 4.072 12 C -0.019 4.019 13 N -0.307 5.307 14 C 0.049 3.951 15 C -0.562 4.562 16 H 0.054 0.946 17 C -0.186 4.186 18 N -0.587 5.587 19 Si 0.772 3.228 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.175 1.175 23 C -0.096 4.096 24 C -0.011 4.011 25 O -0.311 6.311 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.145 0.855 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.153 0.847 38 H 0.042 0.958 39 H -0.002 1.002 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.135 0.865 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.646 -10.919 -9.594 22.861 hybrid contribution -0.439 0.445 0.604 0.869 sum -18.085 -10.474 -8.990 22.750 Atomic orbital electron populations 1.21723 0.90522 1.03484 1.03604 1.22315 0.96451 0.94904 0.83901 0.93118 1.22840 0.85769 1.00756 0.99554 1.59667 1.10084 1.53044 1.00777 1.18695 0.97999 0.92365 0.92340 1.21692 1.01712 0.94815 0.98935 1.21321 0.97023 1.00743 0.93967 1.21462 0.97727 0.93966 1.00590 1.21226 0.99068 0.96002 0.96446 1.19830 0.96497 0.95792 0.95100 1.20678 0.92895 0.92975 0.95383 1.60586 1.42569 1.13037 1.14528 1.19721 0.93491 0.87679 0.94163 1.21279 1.21850 0.93609 1.19434 0.94587 1.25818 0.94915 1.03269 0.94618 1.70052 1.31048 1.29486 1.28082 0.85700 0.78399 0.78657 0.80075 1.19294 1.20442 1.17534 1.22762 1.00871 0.96374 0.89545 1.22672 0.80520 1.00121 0.97836 1.87948 1.21212 1.78439 1.43519 0.91466 0.89205 0.91303 0.92762 0.89315 0.85495 0.83433 0.83329 0.85089 0.91305 0.95054 0.84730 0.95823 1.00221 0.92361 0.90618 0.92544 0.86522 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.57 71.98 0.69 -1.61 16 2 C 0.08 1.94 3.43 30.62 0.10 2.04 16 3 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.04 0.86 4.64 86.31 0.40 1.26 16 5 N -0.51 -14.23 3.56 -694.32 -2.47 -16.71 16 6 C 0.08 2.19 4.62 38.21 0.18 2.37 16 7 C -0.15 -3.41 8.62 22.40 0.19 -3.22 16 8 C -0.11 -2.15 10.04 22.25 0.22 -1.93 16 9 C -0.12 -2.42 10.04 22.29 0.22 -2.20 16 10 C -0.11 -2.77 9.66 22.25 0.21 -2.56 16 11 C -0.07 -2.13 5.38 -19.73 -0.11 -2.23 16 12 C 0.11 3.87 5.45 85.56 0.47 4.34 16 13 N -0.68 -29.50 6.51 -521.97 -3.40 -32.90 16 14 C 0.18 8.91 4.50 85.56 0.39 9.30 16 15 C -0.52 -31.20 9.87 25.60 0.25 -30.95 16 16 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 17 C 0.01 0.68 5.47 84.65 0.46 1.14 16 18 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 19 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 23 C 0.03 0.85 5.19 86.32 0.45 1.30 16 24 C 0.07 1.80 7.01 72.02 0.50 2.30 16 25 O -0.39 -10.62 10.47 -148.98 -1.56 -12.18 16 26 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.14 7.20 -2.38 -0.02 1.12 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.13 2.50 7.04 -2.91 -0.02 2.48 16 32 H 0.15 1.94 8.06 -2.92 -0.02 1.92 16 33 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.13 3.11 8.03 -2.91 -0.02 3.09 16 35 H 0.07 2.34 7.99 -2.39 -0.02 2.32 16 36 H 0.03 1.14 7.84 -2.38 -0.02 1.12 16 37 H 0.33 14.75 7.19 -89.69 -0.64 14.11 16 38 H 0.02 1.19 7.20 -2.39 -0.02 1.17 16 39 H -0.02 -0.98 7.57 -2.39 -0.02 -1.00 16 40 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 41 H 0.08 2.33 7.31 -2.39 -0.02 2.31 16 42 H 0.06 1.37 7.43 -2.39 -0.02 1.36 16 43 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -68.97 350.48 -0.33 -69.30 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.27 Total: 25.77 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 4.64 Total: -20.64 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -5.57 Total: -109.23 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -1.56 Total: -12.18 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -68.97 -0.33 -69.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459511232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.836 kcal (2) G-P(sol) polarization free energy of solvation -68.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds