Wall clock time and date at job start Tue Mar 31 2020 08:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47008 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00109 * 2 1 3 5 5 H 1.08003 * 119.99495 * 119.99784 * 4 2 1 6 6 C 1.37872 * 120.00343 * 300.00281 * 4 2 1 7 7 N 1.31520 * 119.99773 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00276 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.46870 * 59.99374 * 8 6 4 10 10 H 1.48493 * 109.46879 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46660 * 299.99315 * 8 6 4 12 12 N 1.46501 * 109.46842 * 240.00124 * 2 1 3 13 13 C 1.34779 * 120.00008 * 85.00054 * 12 2 1 14 14 O 1.21550 * 119.99966 * 359.97438 * 13 12 2 15 15 C 1.47848 * 120.00150 * 179.97438 * 13 12 2 16 16 C 1.39575 * 120.14487 * 180.02562 * 15 13 12 17 17 C 1.37955 * 119.85263 * 180.27853 * 16 15 13 18 18 C 1.38361 * 120.14138 * 359.49245 * 17 16 15 19 19 C 1.50708 * 119.85196 * 180.25817 * 18 17 16 20 20 C 1.52999 * 109.47076 * 270.25154 * 19 18 17 21 21 N 1.46899 * 109.47059 * 179.97438 * 20 19 18 22 22 C 1.46903 * 110.99924 * 66.04602 * 21 20 19 23 23 C 1.46897 * 110.99809 * 189.99567 * 21 20 19 24 24 C 1.38356 * 120.29644 * 0.50649 * 18 17 16 25 25 C 1.37958 * 120.14423 * 359.75425 * 24 18 17 26 26 H 1.09003 * 109.47346 * 59.99829 * 1 2 3 27 27 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47335 * 299.99774 * 1 2 3 29 29 H 0.96999 * 120.00090 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00391 * 265.00330 * 12 2 1 31 31 H 1.08002 * 120.07104 * 359.97438 * 16 15 13 32 32 H 1.07998 * 119.92975 * 179.72529 * 17 16 15 33 33 H 1.08997 * 109.46821 * 30.25241 * 19 18 17 34 34 H 1.09000 * 109.46932 * 150.24699 * 19 18 17 35 35 H 1.09004 * 109.47072 * 300.00014 * 20 19 18 36 36 H 1.08994 * 109.47029 * 59.99595 * 20 19 18 37 37 H 1.09009 * 109.46979 * 59.99831 * 22 21 20 38 38 H 1.09000 * 109.46988 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.47306 * 300.00322 * 22 21 20 40 40 H 1.09004 * 109.46906 * 60.00598 * 23 21 20 41 41 H 1.08998 * 109.46997 * 179.97438 * 23 21 20 42 42 H 1.09001 * 109.47391 * 300.00175 * 23 21 20 43 43 H 1.08006 * 119.93372 * 179.76996 * 24 18 17 44 44 H 1.07997 * 120.07488 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8075 -1.1192 4.0076 10 1 1.8279 -0.4195 5.2203 11 1 1.8280 -2.5200 4.0081 12 7 2.0182 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8575 1.1610 -2.4118 15 6 2.6402 -0.7150 -3.5643 16 6 2.7752 -0.0215 -4.7680 17 6 3.2306 -0.6790 -5.8920 18 6 3.5632 -2.0203 -5.8253 19 6 4.0655 -2.7308 -7.0559 20 6 2.8807 -3.3190 -7.8246 21 7 3.3703 -4.0109 -9.0244 22 6 4.1715 -5.1880 -8.6631 23 6 2.2576 -4.3827 -9.9085 24 6 3.4318 -2.7137 -4.6353 25 6 2.9725 -2.0694 -3.5052 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7094 1.1616 3.4844 30 1 2.2489 -1.6317 -1.1528 31 1 2.5190 1.0264 -4.8205 32 1 3.3312 -0.1446 -6.8251 33 1 4.5965 -2.0231 -7.6926 34 1 4.7421 -3.5331 -6.7614 35 1 2.3497 -4.0266 -7.1878 36 1 2.2042 -2.5166 -8.1189 37 1 3.5595 -5.8807 -8.0853 38 1 4.5210 -5.6818 -9.5698 39 1 5.0281 -4.8751 -8.0660 40 1 1.7229 -3.4843 -10.2170 41 1 2.6481 -4.8929 -10.7890 42 1 1.5764 -5.0463 -9.3759 43 1 3.6896 -3.7616 -4.5907 44 1 2.8700 -2.6118 -2.5769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557597340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:15 Heat of formation + Delta-G solvation = -18.021918 kcal Electronic energy + Delta-G solvation = -22213.194559 eV Core-core repulsion = 18936.975772 eV Total energy + Delta-G solvation = -3276.218788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -39.86776 -38.46351 -37.49448 -34.82357 -33.31233 -32.36951 -30.89621 -29.60351 -28.29086 -27.92966 -25.29839 -25.10288 -22.68106 -22.55903 -21.32702 -20.63493 -19.40910 -17.93904 -16.31469 -16.05251 -15.83706 -15.47366 -15.24285 -14.87097 -14.71495 -14.40008 -14.17837 -13.83594 -13.57134 -13.26255 -12.95738 -12.87602 -12.62494 -12.38247 -12.18378 -12.09720 -11.80789 -11.59073 -11.30720 -11.27143 -11.09889 -10.96063 -10.83965 -10.73671 -10.33474 -10.23580 -9.13669 -9.05463 -8.93727 -8.77004 -8.65099 -8.55069 -7.90592 -6.12473 -4.22036 1.01303 1.43419 3.25230 3.27204 3.30622 3.31869 3.61140 4.06036 4.19200 4.37671 4.60207 4.70949 4.80296 4.87071 4.95332 5.00308 5.03068 5.19583 5.20029 5.26060 5.30870 5.37242 5.44030 5.50750 5.52450 5.54634 5.74849 5.80075 5.95397 6.04658 6.37728 6.52653 6.54224 6.63449 6.64844 6.82988 6.94543 6.97625 7.14733 7.44401 7.55851 7.69104 7.91195 8.14362 8.64637 8.77015 9.09737 9.45304 10.93520 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.002690 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.622716 B =10404.505832 C =10909.329478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.540 3.460 14 O -0.552 6.552 15 C -0.123 4.123 16 C -0.063 4.063 17 C -0.125 4.125 18 C -0.071 4.071 19 C -0.077 4.077 20 C 0.059 3.941 21 N -0.549 5.549 22 C 0.019 3.981 23 C 0.024 3.976 24 C -0.125 4.125 25 C -0.086 4.086 26 H 0.015 0.985 27 H 0.026 0.974 28 H 0.091 0.909 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.123 0.877 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.851 -11.391 -21.040 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.349 5.349 13 C 0.326 3.674 14 O -0.432 6.432 15 C -0.126 4.126 16 C -0.082 4.082 17 C -0.143 4.143 18 C -0.072 4.072 19 C -0.114 4.114 20 C -0.069 4.069 21 N -0.273 5.273 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.143 4.143 25 C -0.105 4.105 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.141 0.859 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.835 -10.097 -21.130 23.913 hybrid contribution -0.152 -1.546 1.398 2.089 sum 4.684 -11.642 -19.733 23.385 Atomic orbital electron populations 1.22080 0.98354 0.99152 1.00977 1.18776 0.91104 0.94053 0.79842 0.93229 1.21166 1.32564 1.13270 0.90317 0.92141 1.24890 0.94798 0.94964 0.99050 1.69894 1.35768 1.22362 1.24012 0.86493 0.79179 0.79561 0.81777 1.20161 1.21103 1.20162 1.46498 1.64480 1.13535 1.10428 1.18271 0.78909 0.86807 0.83432 1.90718 1.51647 1.15689 1.85149 1.20341 1.02667 0.94345 0.95225 1.21296 0.95323 1.00487 0.91102 1.20992 1.00743 0.94091 0.98458 1.19932 0.98383 0.94091 0.94813 1.20602 0.97377 0.99894 0.93560 1.22148 0.96543 0.98050 0.90136 1.61998 1.22854 1.25449 1.16989 1.22463 0.98005 0.91485 1.00953 1.22383 0.92727 1.00671 0.96679 1.20922 1.01306 0.99746 0.92358 1.21380 0.96755 0.93703 0.98662 0.96590 0.95458 0.89057 0.92488 0.77878 0.84733 0.85650 0.90000 0.90884 0.94437 0.90424 0.95568 0.91470 0.90944 0.91245 0.91361 0.95606 0.85945 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.85 2.56 -69.08 -0.18 6.67 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.01 11.32 55.43 0.63 -24.38 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 12 N -0.70 -15.16 5.02 -55.88 -0.28 -15.44 16 13 C 0.54 11.46 7.74 -12.33 -0.10 11.36 16 14 O -0.55 -13.74 16.01 5.32 0.09 -13.66 16 15 C -0.12 -2.04 5.87 -104.97 -0.62 -2.65 16 16 C -0.06 -0.93 9.60 -39.19 -0.38 -1.31 16 17 C -0.12 -1.47 9.68 -39.64 -0.38 -1.85 16 18 C -0.07 -0.77 5.14 -104.53 -0.54 -1.30 16 19 C -0.08 -0.65 5.26 -27.88 -0.15 -0.79 16 20 C 0.06 0.49 4.94 -3.82 -0.02 0.47 16 21 N -0.55 -4.38 5.02 -251.26 -1.26 -5.64 16 22 C 0.02 0.13 9.32 60.07 0.56 0.69 16 23 C 0.02 0.16 9.57 60.06 0.57 0.73 16 24 C -0.13 -1.42 9.68 -39.64 -0.38 -1.80 16 25 C -0.09 -1.18 9.54 -39.18 -0.37 -1.55 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.39 7.21 6.57 -40.82 -0.27 6.94 16 31 H 0.13 2.04 7.65 -52.49 -0.40 1.64 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.07 0.56 6.49 -51.93 -0.34 0.23 16 35 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 36 H 0.08 0.66 8.06 -51.93 -0.42 0.25 16 37 H 0.03 0.17 8.14 -51.92 -0.42 -0.25 16 38 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 39 H 0.07 0.46 6.47 -51.93 -0.34 0.12 16 40 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 41 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 42 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.13 1.59 6.41 -52.49 -0.34 1.25 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -31.15 361.02 -9.43 -40.57 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.99 Total: 5.04 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -2.03 Total: -7.61 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.91 Total: -45.46 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.15 -9.43 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557597340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.551 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds