Wall clock time and date at job start Tue Mar 31 2020 08:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47008 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00109 * 2 1 3 5 5 H 1.08003 * 119.99495 * 119.99784 * 4 2 1 6 6 C 1.37872 * 120.00343 * 300.00281 * 4 2 1 7 7 N 1.31520 * 119.99773 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00276 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.46870 * 59.99374 * 8 6 4 10 10 H 1.48493 * 109.46879 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46660 * 299.99315 * 8 6 4 12 12 N 1.46501 * 109.46842 * 240.00124 * 2 1 3 13 13 C 1.34779 * 120.00008 * 85.00054 * 12 2 1 14 14 O 1.21550 * 119.99966 * 359.97438 * 13 12 2 15 15 C 1.47848 * 120.00150 * 179.97438 * 13 12 2 16 16 C 1.39575 * 120.14487 * 180.02562 * 15 13 12 17 17 C 1.37955 * 119.85263 * 180.27853 * 16 15 13 18 18 C 1.38361 * 120.14138 * 359.49245 * 17 16 15 19 19 C 1.50708 * 119.85196 * 180.25817 * 18 17 16 20 20 C 1.52999 * 109.47076 * 270.25154 * 19 18 17 21 21 N 1.46899 * 109.47059 * 179.97438 * 20 19 18 22 22 C 1.46903 * 110.99924 * 66.04602 * 21 20 19 23 23 C 1.46897 * 110.99809 * 189.99567 * 21 20 19 24 24 C 1.38356 * 120.29644 * 0.50649 * 18 17 16 25 25 C 1.37958 * 120.14423 * 359.75425 * 24 18 17 26 26 H 1.09003 * 109.47346 * 59.99829 * 1 2 3 27 27 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47335 * 299.99774 * 1 2 3 29 29 H 0.96999 * 120.00090 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00391 * 265.00330 * 12 2 1 31 31 H 1.08002 * 120.07104 * 359.97438 * 16 15 13 32 32 H 1.07998 * 119.92975 * 179.72529 * 17 16 15 33 33 H 1.08997 * 109.46821 * 30.25241 * 19 18 17 34 34 H 1.09000 * 109.46932 * 150.24699 * 19 18 17 35 35 H 1.09004 * 109.47072 * 300.00014 * 20 19 18 36 36 H 1.08994 * 109.47029 * 59.99595 * 20 19 18 37 37 H 1.09009 * 109.46979 * 59.99831 * 22 21 20 38 38 H 1.09000 * 109.46988 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.47306 * 300.00322 * 22 21 20 40 40 H 1.09004 * 109.46906 * 60.00598 * 23 21 20 41 41 H 1.08998 * 109.46997 * 179.97438 * 23 21 20 42 42 H 1.09001 * 109.47391 * 300.00175 * 23 21 20 43 43 H 1.08006 * 119.93372 * 179.76996 * 24 18 17 44 44 H 1.07997 * 120.07488 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8075 -1.1192 4.0076 10 1 1.8279 -0.4195 5.2203 11 1 1.8280 -2.5200 4.0081 12 7 2.0182 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8575 1.1610 -2.4118 15 6 2.6402 -0.7150 -3.5643 16 6 2.7752 -0.0215 -4.7680 17 6 3.2306 -0.6790 -5.8920 18 6 3.5632 -2.0203 -5.8253 19 6 4.0655 -2.7308 -7.0559 20 6 2.8807 -3.3190 -7.8246 21 7 3.3703 -4.0109 -9.0244 22 6 4.1715 -5.1880 -8.6631 23 6 2.2576 -4.3827 -9.9085 24 6 3.4318 -2.7137 -4.6353 25 6 2.9725 -2.0694 -3.5052 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7094 1.1616 3.4844 30 1 2.2489 -1.6317 -1.1528 31 1 2.5190 1.0264 -4.8205 32 1 3.3312 -0.1446 -6.8251 33 1 4.5965 -2.0231 -7.6926 34 1 4.7421 -3.5331 -6.7614 35 1 2.3497 -4.0266 -7.1878 36 1 2.2042 -2.5166 -8.1189 37 1 3.5595 -5.8807 -8.0853 38 1 4.5210 -5.6818 -9.5698 39 1 5.0281 -4.8751 -8.0660 40 1 1.7229 -3.4843 -10.2170 41 1 2.6481 -4.8929 -10.7890 42 1 1.5764 -5.0463 -9.3759 43 1 3.6896 -3.7616 -4.5907 44 1 2.8700 -2.6118 -2.5769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557597340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:12 Heat of formation + Delta-G solvation = -38.029018 kcal Electronic energy + Delta-G solvation = -22214.062132 eV Core-core repulsion = 18936.975772 eV Total energy + Delta-G solvation = -3277.086361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -41.17935 -39.71607 -38.27766 -36.77170 -34.58925 -33.97973 -32.00757 -31.09903 -29.57506 -28.42776 -27.37289 -26.02082 -23.93047 -23.57086 -22.51964 -21.74123 -21.02565 -19.50996 -17.89951 -17.35901 -16.89903 -16.61166 -16.29539 -15.97595 -15.86378 -15.63787 -15.54679 -15.22302 -14.57578 -14.48212 -14.23657 -14.02335 -13.84003 -13.64393 -13.21248 -13.01949 -12.90193 -12.81384 -12.76131 -12.65323 -12.42841 -12.29717 -12.17890 -12.12672 -12.10970 -11.61320 -11.15569 -10.87007 -10.60899 -9.95823 -9.93539 -9.60960 -9.29558 -8.19079 -6.37423 -0.12528 0.42881 1.44267 1.46951 1.54798 1.93457 2.32518 2.56856 2.86783 3.06525 3.11273 3.79576 3.82359 4.02034 4.05908 4.11760 4.25304 4.35290 4.45331 4.51444 4.53615 4.64866 4.70432 4.73705 4.77408 4.87681 4.88777 4.96579 5.04025 5.05021 5.06488 5.11603 5.22412 5.33557 5.37007 5.46802 5.56207 5.61050 5.65046 5.87006 5.95797 6.05856 6.08152 6.11886 6.68841 6.89032 7.28486 7.46571 8.87349 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.002690 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.622716 B =10404.505832 C =10909.329478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.002 1.002 4 C -0.549 4.549 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.976 3.024 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.262 1.262 12 N -0.698 5.698 13 C 0.537 3.463 14 O -0.601 6.601 15 C -0.152 4.152 16 C -0.076 4.076 17 C -0.120 4.120 18 C -0.055 4.055 19 C -0.070 4.070 20 C 0.062 3.938 21 N -0.559 5.559 22 C 0.017 3.983 23 C 0.022 3.978 24 C -0.119 4.119 25 C -0.085 4.085 26 H 0.010 0.990 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.266 0.734 30 H 0.404 0.596 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.024 0.976 43 H 0.155 0.845 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.307 -14.496 -22.370 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.016 0.984 4 C -0.587 4.587 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.555 5.555 8 Si 0.800 3.200 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.187 1.187 12 N -0.347 5.347 13 C 0.325 3.675 14 O -0.485 6.485 15 C -0.155 4.155 16 C -0.095 4.095 17 C -0.137 4.137 18 C -0.055 4.055 19 C -0.108 4.108 20 C -0.066 4.066 21 N -0.283 5.283 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.137 4.137 25 C -0.104 4.104 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.240 0.760 31 H 0.137 0.863 32 H 0.169 0.831 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.043 0.957 43 H 0.173 0.827 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.304 -13.247 -22.489 26.851 hybrid contribution -0.575 -0.592 1.655 1.850 sum 5.729 -13.840 -20.834 25.660 Atomic orbital electron populations 1.21903 0.98146 0.99562 0.99619 1.18400 0.91269 0.91948 0.81783 0.98417 1.21486 1.32852 1.13703 0.90666 0.90759 1.25846 0.94806 0.95599 1.02419 1.70052 1.36856 1.23860 1.24773 0.85342 0.78628 0.78719 0.77320 1.19556 1.21109 1.18680 1.46227 1.64669 1.14188 1.09575 1.19026 0.77643 0.86372 0.84439 1.90676 1.53780 1.17995 1.86031 1.20002 1.06166 0.95766 0.93584 1.21306 0.96325 1.00109 0.91750 1.21230 0.99582 0.94732 0.98192 1.20270 0.96049 0.93578 0.95651 1.20601 0.97570 1.00231 0.92358 1.22077 0.96267 0.97943 0.90339 1.62010 1.23319 1.26185 1.16830 1.22518 0.97946 0.91109 1.01496 1.22421 0.92532 1.00803 0.96823 1.21266 0.99841 1.01160 0.91397 1.21506 0.96394 0.92313 1.00161 0.97092 0.93948 0.91192 0.92452 0.75981 0.86289 0.83123 0.89357 0.89381 0.94766 0.90849 0.95573 0.90721 0.90412 0.91196 0.90429 0.95697 0.82695 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.02 9.26 71.98 0.67 -6.35 16 2 C 0.27 14.54 2.56 44.24 0.11 14.65 16 3 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 4 C -0.55 -29.60 8.73 25.60 0.22 -29.38 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.31 11.32 21.45 0.24 -53.06 16 8 Si 0.98 42.17 29.54 68.60 2.03 44.20 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 12 N -0.70 -30.96 5.02 -448.99 -2.25 -33.22 16 13 C 0.54 23.76 7.74 86.79 0.67 24.43 16 14 O -0.60 -31.96 16.01 -3.87 -0.06 -32.02 16 15 C -0.15 -5.09 5.87 -20.09 -0.12 -5.21 16 16 C -0.08 -2.25 9.60 22.53 0.22 -2.04 16 17 C -0.12 -2.56 9.68 22.23 0.22 -2.35 16 18 C -0.05 -0.99 5.14 -19.80 -0.10 -1.10 16 19 C -0.07 -0.91 5.26 29.85 0.16 -0.75 16 20 C 0.06 0.84 4.94 86.30 0.43 1.26 16 21 N -0.56 -7.30 5.02 -948.84 -4.76 -12.06 16 22 C 0.02 0.18 9.32 127.69 1.19 1.37 16 23 C 0.02 0.25 9.57 127.69 1.22 1.47 16 24 C -0.12 -2.29 9.68 22.23 0.22 -2.07 16 25 C -0.09 -2.18 9.54 22.53 0.21 -1.96 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 3.97 6.07 -2.38 -0.01 3.96 16 29 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.40 14.97 6.57 -92.71 -0.61 14.36 16 31 H 0.12 3.82 7.65 -2.91 -0.02 3.80 16 32 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.09 1.11 8.08 -2.39 -0.02 1.10 16 34 H 0.09 0.95 6.49 -2.39 -0.02 0.93 16 35 H 0.03 0.49 8.12 -2.39 -0.02 0.47 16 36 H 0.07 1.06 8.06 -2.39 -0.02 1.04 16 37 H 0.03 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 39 H 0.08 0.70 6.47 -2.39 -0.02 0.69 16 40 H 0.07 0.75 8.12 -2.38 -0.02 0.73 16 41 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 42 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.14 3.16 6.41 -2.91 -0.02 3.14 16 Total: -1.00 -70.19 361.02 1.33 -68.86 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.37 Total: 24.14 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 5.76 Total: -6.85 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -6.77 Total: -98.34 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.06 Total: -32.02 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -70.19 1.33 -68.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557597340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.831 kcal (2) G-P(sol) polarization free energy of solvation -70.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds