Wall clock time and date at job start Tue Mar 31 2020 07:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46556 * 2 1 4 4 C 1.50696 * 109.47003 * 240.00282 * 2 1 3 5 5 C 1.38310 * 119.96588 * 25.85540 * 4 2 1 6 6 C 1.38266 * 120.14979 * 180.02562 * 5 4 2 7 7 C 1.38124 * 120.07523 * 0.24646 * 6 5 4 8 8 C 1.38895 * 119.92352 * 359.45776 * 7 6 5 9 9 N 1.39678 * 120.07441 * 180.27532 * 8 7 6 10 10 C 1.46502 * 119.99752 * 0.28902 * 9 8 7 11 11 C 1.50698 * 109.46911 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99836 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00192 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99757 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00360 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46898 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47304 * 119.99588 * 15 13 11 18 18 H 1.48494 * 109.46959 * 239.99804 * 15 13 11 19 19 C 1.38084 * 119.95944 * 205.87185 * 4 2 1 20 20 N 1.46894 * 109.47225 * 119.99919 * 2 1 3 21 21 C 1.47020 * 111.00117 * 53.76653 * 20 2 1 22 22 C 1.53091 * 109.26004 * 177.60735 * 21 20 2 23 23 O 1.43017 * 109.25946 * 56.84592 * 22 21 20 24 24 C 1.43012 * 113.73841 * 301.33166 * 23 22 21 25 25 C 1.47015 * 111.00187 * 290.13059 * 20 2 1 26 26 H 1.09002 * 109.47432 * 299.99880 * 1 2 3 27 27 H 1.09005 * 109.47487 * 59.99914 * 1 2 3 28 28 H 1.09001 * 109.46875 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.92280 * 0.02562 * 5 4 2 30 30 H 1.08001 * 119.96120 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.03723 * 179.72212 * 7 6 5 32 32 H 0.96999 * 120.00264 * 180.29072 * 9 8 7 33 33 H 1.08995 * 109.47528 * 300.00196 * 10 9 8 34 34 H 1.08998 * 109.47101 * 60.00696 * 10 9 8 35 35 H 0.97009 * 119.99910 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.03844 * 359.95791 * 19 4 2 37 37 H 1.09003 * 109.49888 * 297.54244 * 21 20 2 38 38 H 1.09001 * 109.50588 * 57.66863 * 21 20 2 39 39 H 1.09004 * 109.50816 * 296.91222 * 22 21 20 40 40 H 1.09000 * 109.54131 * 176.80396 * 22 21 20 41 41 H 1.09001 * 109.50893 * 298.73350 * 24 23 22 42 42 H 1.09006 * 109.54176 * 178.62782 * 24 23 22 43 43 H 1.09006 * 109.50554 * 302.32632 * 25 20 2 44 44 H 1.08996 * 109.50464 * 62.41143 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.2459 -0.7631 -2.3671 6 6 1.7028 -1.4143 -3.4980 7 6 2.9447 -2.0189 -3.4944 8 6 3.7395 -1.9625 -2.3568 9 7 4.9983 -2.5679 -2.3516 10 6 5.4841 -3.2578 -3.5492 11 6 6.8569 -3.8197 -3.2830 12 1 7.3208 -3.6774 -2.3181 13 6 7.5206 -4.5153 -4.2712 14 7 6.9554 -4.6890 -5.4460 15 14 9.2220 -5.2124 -3.9411 16 1 9.6311 -4.8825 -2.5522 17 1 9.1945 -6.6872 -4.1124 18 1 10.1930 -4.6211 -4.8963 19 6 3.2770 -1.3081 -1.2218 20 7 2.0197 -0.6924 1.1994 21 6 1.4304 -2.0348 1.3103 22 6 2.0117 -2.7417 2.5375 23 8 1.7675 -1.9454 3.7002 24 6 2.3280 -0.6318 3.6265 25 6 1.7500 0.0965 2.4103 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2729 -0.2946 -2.3712 30 1 1.0861 -1.4540 -4.3837 31 1 3.2991 -2.5312 -4.3767 32 1 5.5507 -2.5315 -1.5552 33 1 4.8025 -4.0698 -3.8025 34 1 5.5343 -2.5532 -4.3793 35 1 7.4222 -5.1787 -6.1411 36 1 3.8907 -1.2662 -0.3341 37 1 0.3490 -1.9498 1.4173 38 1 1.6640 -2.6100 0.4143 39 1 3.0856 -2.8746 2.4064 40 1 1.5363 -3.7153 2.6567 41 1 3.4112 -0.7033 3.5271 42 1 2.0815 -0.0788 4.5330 43 1 2.2169 1.0770 2.3173 44 1 0.6737 0.2161 2.5344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566673940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:34 Heat of formation + Delta-G solvation = -13.519040 kcal Electronic energy + Delta-G solvation = -23249.493326 eV Core-core repulsion = 19973.469798 eV Total energy + Delta-G solvation = -3276.023528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.18603 -38.73044 -36.63218 -34.76519 -32.68914 -31.66375 -31.21744 -29.91303 -28.31413 -26.89402 -26.03092 -24.15184 -23.70344 -22.27201 -21.67347 -20.35659 -19.14419 -17.18660 -16.73768 -16.38116 -15.97929 -15.41438 -15.18473 -15.08097 -14.85640 -14.70400 -14.40864 -14.01474 -13.58641 -13.23987 -13.04520 -12.77379 -12.59571 -12.31974 -12.11035 -12.05286 -11.82265 -11.63097 -11.36816 -11.09324 -11.02565 -10.94434 -10.78571 -10.56956 -10.33844 -10.08979 -9.78419 -9.37236 -9.36936 -8.54415 -8.40730 -8.20007 -6.50282 -6.21076 -4.25961 1.96551 2.24342 3.21741 3.29326 3.32950 3.62967 3.79112 4.25789 4.44166 4.57546 4.74041 4.81181 4.87791 4.99330 5.09141 5.10457 5.16333 5.22839 5.24045 5.42853 5.47523 5.52306 5.58126 5.63314 5.71602 5.79618 5.83631 5.90349 6.04995 6.08699 6.22953 6.38394 6.54586 6.81830 6.87900 7.01910 7.05531 7.09477 7.18818 7.24667 7.43861 7.50222 7.68747 7.95894 8.33540 8.70208 8.92818 9.40603 10.89611 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.003696 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.354505 B = 7574.464162 C = 8768.800848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.125 3.875 3 H 0.089 0.911 4 C -0.039 4.039 5 C -0.203 4.203 6 C -0.073 4.073 7 C -0.204 4.204 8 C 0.229 3.771 9 N -0.730 5.730 10 C 0.252 3.748 11 C -0.537 4.537 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.189 4.189 20 N -0.523 5.523 21 C 0.016 3.984 22 C 0.063 3.937 23 O -0.389 6.389 24 C 0.064 3.936 25 C 0.016 3.984 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.391 0.609 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.265 0.735 36 H 0.122 0.878 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.811 9.006 13.343 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.017 3.983 3 H 0.107 0.893 4 C -0.041 4.041 5 C -0.224 4.224 6 C -0.092 4.092 7 C -0.227 4.227 8 C 0.120 3.880 9 N -0.352 5.352 10 C 0.130 3.870 11 C -0.576 4.576 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.527 5.527 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.212 4.212 20 N -0.248 5.248 21 C -0.112 4.112 22 C -0.014 4.014 23 O -0.308 6.308 24 C -0.013 4.013 25 C -0.113 4.113 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.139 0.861 32 H 0.224 0.776 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.250 8.665 13.087 19.910 hybrid contribution 0.414 -0.203 -0.008 0.461 sum -11.836 8.462 13.079 19.564 Atomic orbital electron populations 1.22488 0.97067 1.02626 1.01972 1.20497 0.92496 0.97337 0.87928 0.89274 1.19205 0.93996 0.97466 0.93405 1.20558 1.00479 1.07359 0.94015 1.20734 0.95093 0.96133 0.97220 1.20758 0.95913 1.07366 0.98652 1.18104 0.86314 0.90398 0.93225 1.45490 1.14570 1.57673 1.17492 1.19083 0.94161 0.91264 0.82483 1.21245 1.01224 1.35596 0.99508 0.91960 1.24929 0.98481 0.95789 0.94792 1.69959 1.38161 1.40861 1.03748 0.86368 0.83449 0.78746 0.78435 1.19633 1.20777 1.20784 1.20361 0.97596 1.05563 0.97689 1.62365 1.58239 1.02532 1.01621 1.22821 0.97419 0.90912 1.00050 1.22698 1.00783 0.93880 0.84041 1.87957 1.77801 1.25267 1.39731 1.22635 0.97914 0.83491 0.97263 1.22793 0.99663 0.97891 0.90915 0.92886 0.91347 0.91842 0.87334 0.87133 0.86095 0.77625 0.96286 0.96282 0.92546 0.86043 0.93739 0.88799 0.92099 0.88599 0.92250 0.88787 0.89798 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 7.61 37.16 0.28 -1.55 16 2 C 0.13 1.46 2.73 -68.87 -0.19 1.27 16 3 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 4 C -0.04 -0.57 4.61 -104.65 -0.48 -1.05 16 5 C -0.20 -2.94 9.13 -39.54 -0.36 -3.30 16 6 C -0.07 -1.17 10.04 -39.61 -0.40 -1.56 16 7 C -0.20 -3.87 9.31 -39.38 -0.37 -4.23 16 8 C 0.23 4.42 6.65 -83.78 -0.56 3.86 16 9 N -0.73 -15.58 5.73 -59.81 -0.34 -15.92 16 10 C 0.25 6.41 4.67 -5.19 -0.02 6.38 16 11 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 12 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 C -0.19 -3.13 8.40 -39.38 -0.33 -3.46 16 20 N -0.52 -6.00 3.76 -227.73 -0.86 -6.85 16 21 C 0.02 0.19 4.70 -3.71 -0.02 0.17 16 22 C 0.06 0.70 7.01 37.20 0.26 0.96 16 23 O -0.39 -4.59 10.83 -35.23 -0.38 -4.97 16 24 C 0.06 0.61 7.01 37.21 0.26 0.87 16 25 C 0.02 0.15 5.39 -3.71 -0.02 0.13 16 26 H 0.05 0.48 6.74 -51.93 -0.35 0.13 16 27 H 0.07 0.64 6.55 -51.93 -0.34 0.30 16 28 H 0.06 0.68 6.38 -51.93 -0.33 0.35 16 29 H 0.11 1.33 6.06 -52.49 -0.32 1.01 16 30 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.12 2.47 6.73 -52.49 -0.35 2.12 16 32 H 0.39 7.85 8.33 -40.82 -0.34 7.51 16 33 H 0.02 0.53 7.94 -51.93 -0.41 0.11 16 34 H 0.02 0.53 7.96 -51.93 -0.41 0.11 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.12 1.98 7.53 -52.49 -0.40 1.59 16 37 H 0.04 0.51 6.37 -51.93 -0.33 0.18 16 38 H 0.09 1.24 6.72 -51.93 -0.35 0.89 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 44 H 0.04 0.41 6.72 -51.93 -0.35 0.06 16 LS Contribution 343.13 15.07 5.17 5.17 Total: -1.00 -28.83 343.13 -9.82 -38.65 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.77 Total: 7.70 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -2.36 Total: -14.78 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.46 Total: -47.65 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.38 Total: -4.97 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.83 -9.82 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566673940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.129 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds