Wall clock time and date at job start Tue Mar 31 2020 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46556 * 2 1 4 4 C 1.50696 * 109.47003 * 240.00282 * 2 1 3 5 5 C 1.38310 * 119.96588 * 25.85540 * 4 2 1 6 6 C 1.38266 * 120.14979 * 180.02562 * 5 4 2 7 7 C 1.38124 * 120.07523 * 0.24646 * 6 5 4 8 8 C 1.38895 * 119.92352 * 359.45776 * 7 6 5 9 9 N 1.39678 * 120.07441 * 180.27532 * 8 7 6 10 10 C 1.46502 * 119.99752 * 0.28902 * 9 8 7 11 11 C 1.50698 * 109.46911 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99836 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00192 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99757 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00360 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46898 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47304 * 119.99588 * 15 13 11 18 18 H 1.48494 * 109.46959 * 239.99804 * 15 13 11 19 19 C 1.38084 * 119.95944 * 205.87185 * 4 2 1 20 20 N 1.46894 * 109.47225 * 119.99919 * 2 1 3 21 21 C 1.47020 * 111.00117 * 53.76653 * 20 2 1 22 22 C 1.53091 * 109.26004 * 177.60735 * 21 20 2 23 23 O 1.43017 * 109.25946 * 56.84592 * 22 21 20 24 24 C 1.43012 * 113.73841 * 301.33166 * 23 22 21 25 25 C 1.47015 * 111.00187 * 290.13059 * 20 2 1 26 26 H 1.09002 * 109.47432 * 299.99880 * 1 2 3 27 27 H 1.09005 * 109.47487 * 59.99914 * 1 2 3 28 28 H 1.09001 * 109.46875 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.92280 * 0.02562 * 5 4 2 30 30 H 1.08001 * 119.96120 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.03723 * 179.72212 * 7 6 5 32 32 H 0.96999 * 120.00264 * 180.29072 * 9 8 7 33 33 H 1.08995 * 109.47528 * 300.00196 * 10 9 8 34 34 H 1.08998 * 109.47101 * 60.00696 * 10 9 8 35 35 H 0.97009 * 119.99910 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.03844 * 359.95791 * 19 4 2 37 37 H 1.09003 * 109.49888 * 297.54244 * 21 20 2 38 38 H 1.09001 * 109.50588 * 57.66863 * 21 20 2 39 39 H 1.09004 * 109.50816 * 296.91222 * 22 21 20 40 40 H 1.09000 * 109.54131 * 176.80396 * 22 21 20 41 41 H 1.09001 * 109.50893 * 298.73350 * 24 23 22 42 42 H 1.09006 * 109.54176 * 178.62782 * 24 23 22 43 43 H 1.09006 * 109.50554 * 302.32632 * 25 20 2 44 44 H 1.08996 * 109.50464 * 62.41143 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.2459 -0.7631 -2.3671 6 6 1.7028 -1.4143 -3.4980 7 6 2.9447 -2.0189 -3.4944 8 6 3.7395 -1.9625 -2.3568 9 7 4.9983 -2.5679 -2.3516 10 6 5.4841 -3.2578 -3.5492 11 6 6.8569 -3.8197 -3.2830 12 1 7.3208 -3.6774 -2.3181 13 6 7.5206 -4.5153 -4.2712 14 7 6.9554 -4.6890 -5.4460 15 14 9.2220 -5.2124 -3.9411 16 1 9.6311 -4.8825 -2.5522 17 1 9.1945 -6.6872 -4.1124 18 1 10.1930 -4.6211 -4.8963 19 6 3.2770 -1.3081 -1.2218 20 7 2.0197 -0.6924 1.1994 21 6 1.4304 -2.0348 1.3103 22 6 2.0117 -2.7417 2.5375 23 8 1.7675 -1.9454 3.7002 24 6 2.3280 -0.6318 3.6265 25 6 1.7500 0.0965 2.4103 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2729 -0.2946 -2.3712 30 1 1.0861 -1.4540 -4.3837 31 1 3.2991 -2.5312 -4.3767 32 1 5.5507 -2.5315 -1.5552 33 1 4.8025 -4.0698 -3.8025 34 1 5.5343 -2.5532 -4.3793 35 1 7.4222 -5.1787 -6.1411 36 1 3.8907 -1.2662 -0.3341 37 1 0.3490 -1.9498 1.4173 38 1 1.6640 -2.6100 0.4143 39 1 3.0856 -2.8746 2.4064 40 1 1.5363 -3.7153 2.6567 41 1 3.4112 -0.7033 3.5271 42 1 2.0815 -0.0788 4.5330 43 1 2.2169 1.0770 2.3173 44 1 0.6737 0.2161 2.5344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566673940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:33 Heat of formation + Delta-G solvation = -31.711532 kcal Electronic energy + Delta-G solvation = -23250.282211 eV Core-core repulsion = 19973.469798 eV Total energy + Delta-G solvation = -3276.812414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17427 -39.93095 -37.74984 -36.30759 -34.60243 -32.74132 -32.07941 -31.34892 -29.69759 -28.16201 -27.40334 -25.18804 -24.96194 -23.77233 -23.03418 -21.41528 -20.29075 -19.01453 -17.81306 -17.47343 -17.06491 -16.93978 -16.58092 -16.11873 -15.92541 -15.83582 -15.67382 -15.07330 -14.89771 -14.85103 -14.49403 -14.10611 -13.92233 -13.72933 -13.26731 -13.13124 -12.95904 -12.81640 -12.70369 -12.61637 -12.35048 -12.25356 -12.00762 -11.96855 -11.50249 -11.42127 -11.34365 -11.02605 -10.65510 -10.52840 -9.52022 -9.25421 -8.32037 -8.09382 -6.45880 0.62826 0.88796 1.39744 1.39964 1.53512 2.33195 2.76342 2.93825 2.98680 3.02794 3.13367 3.74847 4.00527 4.02040 4.15329 4.20236 4.24768 4.29142 4.38284 4.41579 4.50520 4.55347 4.66452 4.76301 4.79377 4.83372 4.87845 4.90856 4.91978 5.02627 5.06289 5.11427 5.26163 5.28937 5.31789 5.53295 5.62130 5.73770 5.80146 5.87166 6.05583 6.09868 6.20462 6.25393 6.50705 6.78410 7.18036 7.29144 8.80110 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.003696 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.354505 B = 7574.464162 C = 8768.800848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.127 3.873 3 H 0.102 0.898 4 C -0.033 4.033 5 C -0.187 4.187 6 C -0.073 4.073 7 C -0.230 4.230 8 C 0.200 3.800 9 N -0.737 5.737 10 C 0.275 3.725 11 C -0.556 4.556 12 H 0.069 0.931 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.978 3.022 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.182 4.182 20 N -0.537 5.537 21 C 0.022 3.978 22 C 0.064 3.936 23 O -0.403 6.403 24 C 0.059 3.941 25 C 0.018 3.982 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.395 0.605 33 H -0.012 1.012 34 H -0.012 1.012 35 H 0.269 0.731 36 H 0.124 0.876 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 10.463 15.262 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.019 3.981 3 H 0.119 0.881 4 C -0.034 4.034 5 C -0.208 4.208 6 C -0.092 4.092 7 C -0.254 4.254 8 C 0.094 3.906 9 N -0.363 5.363 10 C 0.152 3.848 11 C -0.594 4.594 12 H 0.087 0.913 13 C -0.191 4.191 14 N -0.566 5.566 15 Si 0.802 3.198 16 H -0.185 1.185 17 H -0.201 1.201 18 H -0.202 1.202 19 C -0.205 4.205 20 N -0.261 5.261 21 C -0.106 4.106 22 C -0.013 4.013 23 O -0.322 6.322 24 C -0.017 4.017 25 C -0.109 4.109 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.161 0.839 30 H 0.152 0.848 31 H 0.109 0.891 32 H 0.229 0.771 33 H 0.006 0.994 34 H 0.005 0.995 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.124 0.876 41 H 0.072 0.928 42 H 0.135 0.865 43 H 0.118 0.882 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.316 10.156 15.031 22.504 hybrid contribution 0.578 -0.559 -0.559 0.979 sum -12.738 9.597 14.473 21.536 Atomic orbital electron populations 1.22434 0.95297 1.02551 1.03298 1.20524 0.93781 0.97213 0.86539 0.88067 1.19602 0.92806 0.96094 0.94886 1.20966 1.01445 1.05469 0.92909 1.21011 0.93933 0.95357 0.98898 1.20756 0.97735 1.08972 0.97887 1.18365 0.85794 0.91830 0.94570 1.45115 1.15882 1.59028 1.16291 1.18498 0.93319 0.89700 0.83284 1.21614 1.01929 1.35897 0.99994 0.91258 1.25925 1.02840 0.95923 0.94386 1.70091 1.40083 1.41593 1.04802 0.85208 0.77947 0.77942 0.78740 1.18519 1.20146 1.20156 1.20407 0.98506 1.05030 0.96556 1.62324 1.58665 1.02687 1.02426 1.22702 0.97691 0.90980 0.99218 1.22693 1.00242 0.94444 0.83938 1.87941 1.78042 1.26312 1.39859 1.22824 0.97603 0.82813 0.98481 1.22844 1.00202 0.98145 0.89731 0.91387 0.90268 0.92567 0.83912 0.84828 0.89056 0.77136 0.99430 0.99458 0.92210 0.85832 0.93200 0.90862 0.93141 0.87567 0.92801 0.86465 0.88241 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 7.61 71.98 0.55 -2.30 16 2 C 0.13 2.57 2.73 44.17 0.12 2.69 16 3 H 0.10 1.89 8.04 -2.39 -0.02 1.87 16 4 C -0.03 -0.88 4.61 -19.88 -0.09 -0.97 16 5 C -0.19 -4.95 9.13 22.29 0.20 -4.74 16 6 C -0.07 -2.30 10.04 22.25 0.22 -2.07 16 7 C -0.23 -9.18 9.31 22.40 0.21 -8.97 16 8 C 0.20 8.06 6.65 38.22 0.25 8.32 16 9 N -0.74 -33.32 5.73 -343.13 -1.96 -35.29 16 10 C 0.28 14.99 4.67 85.63 0.40 15.39 16 11 C -0.56 -31.26 9.28 25.60 0.24 -31.03 16 12 H 0.07 3.70 7.60 -2.91 -0.02 3.68 16 13 C 0.01 0.50 5.46 84.65 0.46 0.97 16 14 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 15 Si 0.98 43.29 29.54 68.60 2.03 45.32 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 19 C -0.18 -6.01 8.40 22.40 0.19 -5.82 16 20 N -0.54 -11.07 3.76 -874.39 -3.29 -14.36 16 21 C 0.02 0.48 4.70 86.31 0.41 0.89 16 22 C 0.06 1.35 7.01 72.01 0.50 1.86 16 23 O -0.40 -8.80 10.83 -148.98 -1.61 -10.41 16 24 C 0.06 0.99 7.01 72.01 0.50 1.50 16 25 C 0.02 0.30 5.39 86.31 0.46 0.76 16 26 H 0.07 0.93 6.74 -2.39 -0.02 0.91 16 27 H 0.08 1.11 6.55 -2.38 -0.02 1.10 16 28 H 0.06 1.01 6.38 -2.39 -0.02 0.99 16 29 H 0.14 2.85 6.06 -2.91 -0.02 2.84 16 30 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 31 H 0.09 4.11 6.73 -2.91 -0.02 4.09 16 32 H 0.39 16.62 8.33 -92.71 -0.77 15.85 16 33 H -0.01 -0.72 7.94 -2.39 -0.02 -0.74 16 34 H -0.01 -0.74 7.96 -2.39 -0.02 -0.75 16 35 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 36 H 0.12 4.01 7.53 -2.91 -0.02 3.99 16 37 H 0.05 1.03 6.37 -2.39 -0.02 1.01 16 38 H 0.07 1.89 6.72 -2.39 -0.02 1.88 16 39 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.10 1.30 8.09 -2.38 -0.02 1.28 16 44 H 0.05 0.75 6.72 -2.39 -0.02 0.74 16 Total: -1.00 -64.45 343.13 0.30 -64.15 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.22 Total: 29.04 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.63 Total: -23.54 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -4.97 Total: -104.56 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -1.61 Total: -10.41 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -64.45 0.30 -64.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566673940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.443 kcal (2) G-P(sol) polarization free energy of solvation -64.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds