Wall clock time and date at job start Tue Mar 31 2020 07:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47666 * 2 1 4 4 C 1.50708 * 109.46715 * 119.99934 * 2 1 3 5 5 C 1.38649 * 120.78839 * 330.50394 * 4 2 1 6 6 C 1.38206 * 119.16016 * 179.74952 * 5 4 2 7 7 N 1.31871 * 120.76518 * 0.25564 * 6 5 4 8 8 C 1.31870 * 121.72459 * 359.97438 * 7 6 5 9 9 C 1.38202 * 120.76656 * 359.97438 * 8 7 6 10 10 N 1.46503 * 109.46980 * 239.99416 * 2 1 3 11 11 C 1.46500 * 120.00260 * 305.14174 * 10 2 1 12 12 C 1.34774 * 119.99817 * 125.14906 * 10 2 1 13 13 O 1.21282 * 119.99879 * 359.97438 * 12 10 2 14 14 C 1.50696 * 120.00222 * 180.02562 * 12 10 2 15 15 C 1.52993 * 109.47387 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.47397 * 179.97438 * 15 14 12 17 17 C 1.52993 * 109.47397 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47269 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99577 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00013 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00078 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99804 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47114 * 59.99934 * 22 20 18 24 24 H 1.48499 * 109.46691 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46668 * 300.00039 * 22 20 18 26 26 H 1.09003 * 109.46702 * 60.00082 * 1 2 3 27 27 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46951 * 300.00945 * 1 2 3 29 29 H 1.08003 * 120.42029 * 0.02586 * 5 4 2 30 30 H 1.08001 * 119.61701 * 180.22660 * 6 5 4 31 31 H 1.07998 * 119.61531 * 179.97438 * 8 7 6 32 32 H 1.07999 * 120.42413 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.47175 * 95.32765 * 11 10 2 34 34 H 1.08995 * 109.47546 * 215.33588 * 11 10 2 35 35 H 1.09000 * 109.46942 * 335.33333 * 11 10 2 36 36 H 1.09001 * 109.46680 * 299.99693 * 14 12 10 37 37 H 1.09008 * 109.46978 * 59.99131 * 14 12 10 38 38 H 1.09001 * 109.47598 * 299.99912 * 15 14 12 39 39 H 1.08999 * 109.47398 * 60.00074 * 15 14 12 40 40 H 1.08996 * 109.47482 * 300.00940 * 16 15 14 41 41 H 1.09008 * 109.46590 * 60.00143 * 16 15 14 42 42 H 1.09001 * 109.47598 * 300.00381 * 17 16 15 43 43 H 1.08999 * 109.47398 * 60.00542 * 17 16 15 44 44 H 0.97002 * 119.99929 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.2914 -0.7099 2.4025 6 6 1.7816 -1.3766 3.5094 7 7 2.9408 -2.0033 3.4608 8 6 3.6742 -2.0209 2.3650 9 6 3.2480 -1.3771 1.2187 10 7 2.0184 -0.6907 -1.1961 11 6 1.5740 -2.0563 -1.4862 12 6 2.8765 -0.0700 -2.0296 13 8 3.2441 1.0606 -1.7896 14 6 3.3784 -0.7802 -3.2603 15 6 4.3309 0.1393 -4.0270 16 6 4.8410 -0.5820 -5.2762 17 6 5.7930 0.3377 -6.0433 18 6 6.2949 -0.3725 -7.2741 19 1 5.9672 -1.3792 -7.4879 20 6 7.1724 0.2627 -8.1270 21 7 7.5718 1.4883 -7.8663 22 14 7.7939 -0.6175 -9.6529 23 1 6.6437 -0.9739 -10.5218 24 1 8.7190 0.2748 -10.3967 25 1 8.5136 -1.8532 -9.2528 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 0.3411 -0.1987 2.4484 30 1 1.2088 -1.3840 4.4250 31 1 4.6187 -2.5445 2.3632 32 1 3.8529 -1.3954 0.3242 33 1 0.7284 -2.0250 -2.1732 34 1 2.3915 -2.6155 -1.9413 35 1 1.2715 -2.5444 -0.5597 36 1 3.9066 -1.6872 -2.9663 37 1 2.5342 -1.0420 -3.8984 38 1 3.8025 1.0462 -4.3211 39 1 5.1750 0.4014 -3.3892 40 1 5.3695 -1.4887 -4.9820 41 1 3.9970 -0.8444 -5.9143 42 1 5.2640 1.2442 -6.3377 43 1 6.6370 0.6005 -5.4056 44 1 8.1888 1.9353 -8.4666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588299476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:41 Heat of formation + Delta-G solvation = -19.932440 kcal Electronic energy + Delta-G solvation = -22431.125241 eV Core-core repulsion = 19154.823607 eV Total energy + Delta-G solvation = -3276.301634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.93706 -39.72353 -36.70930 -34.92406 -33.59216 -32.54597 -31.59340 -30.50665 -29.41936 -27.24932 -25.90448 -24.64772 -23.57719 -22.62161 -21.14926 -20.02953 -19.18370 -17.48532 -17.20028 -16.64739 -16.16329 -15.94701 -15.76363 -15.57903 -14.51814 -14.45060 -14.26577 -14.06403 -13.74285 -13.57743 -13.27569 -13.04896 -12.72916 -12.52269 -12.35154 -12.15868 -11.82916 -11.77529 -11.65874 -11.54910 -10.97481 -10.54275 -10.53648 -10.41258 -10.03205 -9.80503 -9.71075 -9.61795 -9.46344 -9.22786 -8.99449 -8.97131 -8.30401 -5.95194 -3.97859 0.82033 0.89556 2.58919 2.73647 3.35130 3.39587 3.41715 3.51356 4.10069 4.16801 4.40295 4.48528 4.57010 4.74750 4.75410 4.83401 4.88881 4.95331 5.10327 5.14598 5.27255 5.31833 5.36077 5.39915 5.41329 5.46711 5.51601 5.65057 5.72992 5.82476 5.91903 6.11835 6.25356 6.32643 6.38007 6.53329 6.82430 6.99429 7.14813 7.21589 7.66315 7.73597 7.89700 8.05914 8.11216 8.47651 9.09638 9.65729 11.16104 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030777 B = 0.002494 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.561582 B =11222.027459 C =11518.069809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.172 3.828 3 H 0.118 0.882 4 C -0.049 4.049 5 C -0.169 4.169 6 C 0.097 3.903 7 N -0.488 5.488 8 C 0.100 3.900 9 C -0.155 4.155 10 N -0.618 5.618 11 C 0.079 3.921 12 C 0.514 3.486 13 O -0.531 6.531 14 C -0.136 4.136 15 C -0.104 4.104 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.138 0.862 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.133 0.867 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.876 -7.780 20.968 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 H 0.136 0.864 4 C -0.059 4.059 5 C -0.189 4.189 6 C -0.060 4.060 7 N -0.198 5.198 8 C -0.057 4.057 9 C -0.175 4.175 10 N -0.353 5.353 11 C -0.064 4.064 12 C 0.304 3.696 13 O -0.407 6.407 14 C -0.176 4.176 15 C -0.142 4.142 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.150 0.850 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.251 -7.457 21.744 28.152 hybrid contribution 0.049 -0.100 -1.613 1.617 sum -16.202 -7.558 20.131 26.923 Atomic orbital electron populations 1.22165 0.93572 1.02813 1.03060 1.19883 0.94397 0.97599 0.81294 0.86444 1.20688 0.94197 0.95522 0.95451 1.22065 1.01470 1.01826 0.93564 1.22759 0.92270 0.92984 0.97987 1.67685 1.06139 1.17781 1.28167 1.22795 0.98821 0.96011 0.88031 1.22025 0.96567 0.98672 1.00268 1.47991 1.47135 1.16023 1.24110 1.21766 1.00693 0.82315 1.01642 1.21210 0.77345 0.86616 0.84476 1.90706 1.56901 1.18705 1.74338 1.21830 1.01355 1.00463 0.93933 1.21471 0.97810 0.97864 0.97054 1.21643 0.99409 0.99141 0.94530 1.19089 0.93768 0.94518 0.94319 1.21243 1.26519 1.00498 1.07676 0.92820 1.25041 0.96488 0.94926 0.98101 1.69961 1.33658 1.12122 1.37729 0.86670 0.78705 0.79493 0.83188 1.20284 1.21317 1.20283 0.91358 0.91871 0.90967 0.84474 0.82772 0.82676 0.84953 0.92254 0.90613 0.91244 0.89105 0.89048 0.91798 0.91823 0.93492 0.93492 0.96615 0.96603 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 8.43 37.16 0.31 -0.72 16 2 C 0.17 1.57 3.05 -69.07 -0.21 1.36 16 3 H 0.12 1.35 6.92 -51.93 -0.36 0.99 16 4 C -0.05 -0.44 4.86 -104.31 -0.51 -0.95 16 5 C -0.17 -1.26 9.22 -39.44 -0.36 -1.62 16 6 C 0.10 0.79 11.18 -17.55 -0.20 0.59 16 7 N -0.49 -5.03 10.36 -13.25 -0.14 -5.17 16 8 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 9 C -0.16 -1.50 9.11 -39.44 -0.36 -1.86 16 10 N -0.62 -6.08 1.85 -175.26 -0.32 -6.40 16 11 C 0.08 0.54 8.76 59.85 0.52 1.07 16 12 C 0.51 6.88 7.61 -10.99 -0.08 6.80 16 13 O -0.53 -9.31 15.32 5.56 0.09 -9.23 16 14 C -0.14 -1.75 4.32 -27.89 -0.12 -1.87 16 15 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 16 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 17 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 18 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 22 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.36 7.41 -51.93 -0.38 -0.03 16 28 H 0.07 0.36 6.59 -51.93 -0.34 0.02 16 29 H 0.14 0.68 6.29 -52.48 -0.33 0.35 16 30 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 31 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.33 7.47 -52.49 -0.39 0.94 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.47 6.66 -51.93 -0.35 0.13 16 35 H 0.07 0.43 7.31 -51.93 -0.38 0.05 16 36 H 0.09 1.00 7.41 -51.93 -0.38 0.61 16 37 H 0.09 1.02 8.11 -51.92 -0.42 0.60 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 39 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 359.99 15.07 5.43 5.43 Total: -1.00 -34.50 359.99 -8.35 -42.85 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -7.10 Total: -3.40 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -2.01 Total: -14.13 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.27 Total: -38.37 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.50 -8.35 -42.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588299476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.918 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds