Wall clock time and date at job start Tue Mar 31 2020 07:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47666 * 2 1 4 4 C 1.50708 * 109.46715 * 119.99934 * 2 1 3 5 5 C 1.38649 * 120.78839 * 330.50394 * 4 2 1 6 6 C 1.38206 * 119.16016 * 179.74952 * 5 4 2 7 7 N 1.31871 * 120.76518 * 0.25564 * 6 5 4 8 8 C 1.31870 * 121.72459 * 359.97438 * 7 6 5 9 9 C 1.38202 * 120.76656 * 359.97438 * 8 7 6 10 10 N 1.46503 * 109.46980 * 239.99416 * 2 1 3 11 11 C 1.46500 * 120.00260 * 305.14174 * 10 2 1 12 12 C 1.34774 * 119.99817 * 125.14906 * 10 2 1 13 13 O 1.21282 * 119.99879 * 359.97438 * 12 10 2 14 14 C 1.50696 * 120.00222 * 180.02562 * 12 10 2 15 15 C 1.52993 * 109.47387 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.47397 * 179.97438 * 15 14 12 17 17 C 1.52993 * 109.47397 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47269 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99577 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00013 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00078 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99804 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47114 * 59.99934 * 22 20 18 24 24 H 1.48499 * 109.46691 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46668 * 300.00039 * 22 20 18 26 26 H 1.09003 * 109.46702 * 60.00082 * 1 2 3 27 27 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46951 * 300.00945 * 1 2 3 29 29 H 1.08003 * 120.42029 * 0.02586 * 5 4 2 30 30 H 1.08001 * 119.61701 * 180.22660 * 6 5 4 31 31 H 1.07998 * 119.61531 * 179.97438 * 8 7 6 32 32 H 1.07999 * 120.42413 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.47175 * 95.32765 * 11 10 2 34 34 H 1.08995 * 109.47546 * 215.33588 * 11 10 2 35 35 H 1.09000 * 109.46942 * 335.33333 * 11 10 2 36 36 H 1.09001 * 109.46680 * 299.99693 * 14 12 10 37 37 H 1.09008 * 109.46978 * 59.99131 * 14 12 10 38 38 H 1.09001 * 109.47598 * 299.99912 * 15 14 12 39 39 H 1.08999 * 109.47398 * 60.00074 * 15 14 12 40 40 H 1.08996 * 109.47482 * 300.00940 * 16 15 14 41 41 H 1.09008 * 109.46590 * 60.00143 * 16 15 14 42 42 H 1.09001 * 109.47598 * 300.00381 * 17 16 15 43 43 H 1.08999 * 109.47398 * 60.00542 * 17 16 15 44 44 H 0.97002 * 119.99929 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.2914 -0.7099 2.4025 6 6 1.7816 -1.3766 3.5094 7 7 2.9408 -2.0033 3.4608 8 6 3.6742 -2.0209 2.3650 9 6 3.2480 -1.3771 1.2187 10 7 2.0184 -0.6907 -1.1961 11 6 1.5740 -2.0563 -1.4862 12 6 2.8765 -0.0700 -2.0296 13 8 3.2441 1.0606 -1.7896 14 6 3.3784 -0.7802 -3.2603 15 6 4.3309 0.1393 -4.0270 16 6 4.8410 -0.5820 -5.2762 17 6 5.7930 0.3377 -6.0433 18 6 6.2949 -0.3725 -7.2741 19 1 5.9672 -1.3792 -7.4879 20 6 7.1724 0.2627 -8.1270 21 7 7.5718 1.4883 -7.8663 22 14 7.7939 -0.6175 -9.6529 23 1 6.6437 -0.9739 -10.5218 24 1 8.7190 0.2748 -10.3967 25 1 8.5136 -1.8532 -9.2528 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 0.3411 -0.1987 2.4484 30 1 1.2088 -1.3840 4.4250 31 1 4.6187 -2.5445 2.3632 32 1 3.8529 -1.3954 0.3242 33 1 0.7284 -2.0250 -2.1732 34 1 2.3915 -2.6155 -1.9413 35 1 1.2715 -2.5444 -0.5597 36 1 3.9066 -1.6872 -2.9663 37 1 2.5342 -1.0420 -3.8984 38 1 3.8025 1.0462 -4.3211 39 1 5.1750 0.4014 -3.3892 40 1 5.3695 -1.4887 -4.9820 41 1 3.9970 -0.8444 -5.9143 42 1 5.2640 1.2442 -6.3377 43 1 6.6370 0.6005 -5.4056 44 1 8.1888 1.9353 -8.4666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588299476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:36 Heat of formation + Delta-G solvation = -40.119187 kcal Electronic energy + Delta-G solvation = -22432.000604 eV Core-core repulsion = 19154.823607 eV Total energy + Delta-G solvation = -3277.176997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -41.70130 -40.60696 -37.60874 -36.59090 -34.75537 -34.16092 -32.24323 -31.64832 -30.63801 -27.91943 -27.53628 -25.57167 -24.31991 -24.06669 -22.20006 -21.63113 -20.08865 -18.45191 -18.17520 -18.10381 -17.40805 -16.83634 -16.68554 -16.49337 -16.29675 -15.70737 -15.02830 -14.79377 -14.54501 -14.50386 -14.45045 -14.21255 -13.67463 -13.62609 -13.57261 -13.35757 -13.06121 -12.87610 -12.78613 -12.45507 -12.39667 -12.32075 -12.14997 -12.12366 -11.37845 -11.34533 -11.16828 -10.82664 -10.54441 -10.53301 -10.46514 -10.10577 -9.77807 -8.18521 -6.30841 0.18103 0.21267 1.40347 1.44424 1.52259 1.57215 1.92792 2.42066 2.84971 3.14115 3.40793 3.57448 3.62995 3.83965 4.02467 4.09610 4.12000 4.15218 4.22956 4.25766 4.31832 4.57101 4.59824 4.63799 4.71768 4.75212 4.80448 4.85101 4.86077 4.92246 4.95149 5.04419 5.16503 5.18257 5.27979 5.33132 5.37000 5.55988 5.59139 5.74941 5.77957 5.88019 6.25083 6.29438 6.87557 7.00930 7.13142 7.38803 8.93565 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030777 B = 0.002494 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.561582 B =11222.027459 C =11518.069809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.170 3.830 3 H 0.089 0.911 4 C -0.056 4.056 5 C -0.160 4.160 6 C 0.092 3.908 7 N -0.513 5.513 8 C 0.090 3.910 9 C -0.167 4.167 10 N -0.607 5.607 11 C 0.072 3.928 12 C 0.511 3.489 13 O -0.586 6.586 14 C -0.126 4.126 15 C -0.096 4.096 16 C -0.094 4.094 17 C 0.019 3.981 18 C -0.542 4.542 19 H 0.067 0.933 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.969 3.031 23 H -0.264 1.264 24 H -0.286 1.286 25 H -0.264 1.264 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.167 0.833 30 H 0.182 0.818 31 H 0.166 0.834 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.061 0.939 42 H -0.016 1.016 43 H -0.016 1.016 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.859 -10.322 21.217 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.066 3.934 3 H 0.106 0.894 4 C -0.065 4.065 5 C -0.180 4.180 6 C -0.065 4.065 7 N -0.223 5.223 8 C -0.066 4.066 9 C -0.187 4.187 10 N -0.339 5.339 11 C -0.070 4.070 12 C 0.302 3.698 13 O -0.465 6.465 14 C -0.165 4.165 15 C -0.134 4.134 16 C -0.132 4.132 17 C -0.018 4.018 18 C -0.580 4.580 19 H 0.085 0.915 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.793 3.207 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.189 1.189 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.184 0.816 30 H 0.199 0.801 31 H 0.183 0.817 32 H 0.141 0.859 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.002 0.998 43 H 0.002 0.998 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.273 -10.053 22.015 30.326 hybrid contribution 0.638 0.722 -1.610 1.876 sum -17.636 -9.332 20.405 28.539 Atomic orbital electron populations 1.22136 0.91045 1.03963 1.03712 1.19935 0.96220 0.96062 0.81135 0.89359 1.20734 0.94258 0.95580 0.95938 1.22336 1.02167 1.01022 0.92454 1.23279 0.91786 0.92180 0.99248 1.67713 1.07238 1.18837 1.28495 1.22982 0.99394 0.96310 0.87945 1.22008 0.97034 0.99588 1.00114 1.47982 1.45583 1.16966 1.23408 1.22034 1.01690 0.80439 1.02840 1.21254 0.77597 0.85990 0.85001 1.90691 1.59127 1.21032 1.75692 1.21702 1.01297 0.99816 0.93669 1.21250 0.98007 0.97965 0.96154 1.21436 0.98503 0.98225 0.95026 1.19053 0.93768 0.94654 0.94361 1.21728 1.26696 1.01181 1.08382 0.91525 1.26100 0.96683 0.95686 1.01967 1.70126 1.34430 1.14042 1.39283 0.85437 0.78374 0.78336 0.78517 1.18849 1.21128 1.18894 0.92069 0.90344 0.89043 0.81606 0.80083 0.81652 0.85933 0.90494 0.89608 0.90085 0.86449 0.86405 0.93929 0.94002 0.92053 0.92030 0.99778 0.99795 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.43 71.98 0.61 -0.99 16 2 C 0.17 2.95 3.05 44.25 0.14 3.09 16 3 H 0.09 2.10 6.92 -2.39 -0.02 2.08 16 4 C -0.06 -0.92 4.86 -19.66 -0.10 -1.02 16 5 C -0.16 -1.99 9.22 22.36 0.21 -1.78 16 6 C 0.09 1.29 11.18 84.68 0.95 2.24 16 7 N -0.51 -9.96 10.36 -195.84 -2.03 -11.99 16 8 C 0.09 1.66 11.18 84.68 0.95 2.61 16 9 C -0.17 -3.15 9.11 22.36 0.20 -2.95 16 10 N -0.61 -11.18 1.85 -826.78 -1.53 -12.71 16 11 C 0.07 0.78 8.76 127.77 1.12 1.89 16 12 C 0.51 13.63 7.61 87.66 0.67 14.30 16 13 O -0.59 -21.55 15.32 -3.04 -0.05 -21.60 16 14 C -0.13 -3.05 4.32 29.84 0.13 -2.92 16 15 C -0.10 -3.44 4.50 30.59 0.14 -3.30 16 16 C -0.09 -3.83 5.15 30.59 0.16 -3.67 16 17 C 0.02 1.03 4.97 29.85 0.15 1.18 16 18 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 19 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 20 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 21 N -0.94 -59.30 13.29 21.45 0.28 -59.01 16 22 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.61 7.41 -2.39 -0.02 0.60 16 28 H 0.09 0.62 6.59 -2.39 -0.02 0.60 16 29 H 0.17 1.02 6.29 -2.91 -0.02 1.01 16 30 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.12 2.49 7.47 -2.91 -0.02 2.47 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 0.79 6.66 -2.39 -0.02 0.78 16 35 H 0.08 0.74 7.31 -2.39 -0.02 0.72 16 36 H 0.12 2.26 7.41 -2.39 -0.02 2.24 16 37 H 0.12 2.28 8.11 -2.38 -0.02 2.26 16 38 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 42 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 43 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -78.45 359.99 5.67 -72.78 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.97 Total: 8.21 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 6.00 Total: -22.48 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -3.27 Total: -83.71 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -78.45 5.67 -72.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588299476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.660 kcal (2) G-P(sol) polarization free energy of solvation -78.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds