Wall clock time and date at job start Tue Mar 31 2020 07:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47017 * 2 1 4 4 C 1.50698 * 109.47021 * 119.99427 * 2 1 3 5 5 C 1.38674 * 120.41640 * 62.19412 * 4 2 1 6 6 C 1.38629 * 118.42021 * 179.78141 * 5 4 2 7 7 C 1.38232 * 119.15996 * 0.51264 * 6 5 4 8 8 N 1.31853 * 120.76144 * 359.72230 * 7 6 5 9 9 C 1.31888 * 121.72718 * 0.02562 * 8 7 6 10 10 N 1.46492 * 109.47241 * 239.99779 * 2 1 3 11 11 C 1.46499 * 119.99987 * 306.43614 * 10 2 1 12 12 C 1.34786 * 120.00318 * 126.16433 * 10 2 1 13 13 O 1.21284 * 119.99611 * 359.97438 * 12 10 2 14 14 C 1.50694 * 120.00397 * 179.97438 * 12 10 2 15 15 C 1.52991 * 109.47286 * 179.97438 * 14 12 10 16 16 C 1.53004 * 109.47346 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47411 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47162 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99598 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99916 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00137 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46540 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46774 * 119.99730 * 22 20 18 25 25 H 1.48499 * 109.47025 * 239.99997 * 22 20 18 26 26 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47055 * 300.00296 * 1 2 3 28 28 H 1.09000 * 109.46833 * 60.00340 * 1 2 3 29 29 H 1.08001 * 120.78915 * 0.02562 * 5 4 2 30 30 H 1.08000 * 120.42038 * 180.21743 * 6 5 4 31 31 H 1.07992 * 119.61949 * 179.74543 * 7 6 5 32 32 H 1.07995 * 119.61480 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47563 * 273.91720 * 11 10 2 34 34 H 1.08994 * 109.47185 * 33.91969 * 11 10 2 35 35 H 1.09007 * 109.47105 * 153.91857 * 11 10 2 36 36 H 1.09003 * 109.46976 * 300.00336 * 14 12 10 37 37 H 1.09004 * 109.46717 * 59.99660 * 14 12 10 38 38 H 1.09003 * 109.47685 * 300.00266 * 15 14 12 39 39 H 1.09004 * 109.47223 * 60.00334 * 15 14 12 40 40 H 1.09003 * 109.46850 * 300.00659 * 16 15 14 41 41 H 1.08995 * 109.46972 * 59.99755 * 16 15 14 42 42 H 1.09000 * 109.46919 * 300.00144 * 17 16 15 43 43 H 1.09003 * 109.46932 * 59.99993 * 17 16 15 44 44 H 0.97000 * 120.00074 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.7404 -2.0503 1.4360 6 6 2.2273 -2.6637 2.5799 7 6 2.9732 -1.9218 3.4765 8 7 3.2272 -0.6478 3.2508 9 6 2.7845 -0.0330 2.1712 10 7 2.0184 -0.6906 -1.1961 11 6 1.5521 -2.0455 -1.5013 12 6 2.8924 -0.0775 -2.0187 13 8 3.2743 1.0463 -1.7689 14 6 3.3952 -0.7881 -3.2488 15 6 4.3671 0.1221 -4.0022 16 6 4.8772 -0.5992 -5.2514 17 6 5.8496 0.3109 -6.0045 18 6 6.3524 -0.3998 -7.2347 19 1 6.0120 -1.4004 -7.4572 20 6 7.2461 0.2276 -8.0764 21 7 7.6594 1.4465 -7.8061 22 14 7.8688 -0.6530 -9.6016 23 1 7.2548 -2.0029 -9.6789 24 1 7.4998 0.1281 -10.8094 25 1 9.3463 -0.7840 -9.5290 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.1511 -2.6038 0.7200 30 1 2.0224 -3.7068 2.7705 31 1 3.3527 -2.3912 4.3720 32 1 3.0124 1.0118 2.0207 33 1 2.1742 -2.7707 -0.9766 34 1 0.5166 -2.1546 -1.1791 35 1 1.6187 -2.2193 -2.5753 36 1 3.9080 -1.7040 -2.9551 37 1 2.5532 -1.0346 -3.8956 38 1 3.8540 1.0379 -4.2959 39 1 5.2092 0.3689 -3.3555 40 1 5.3902 -1.5151 -4.9581 41 1 4.0349 -0.8457 -5.8979 42 1 5.3369 1.2269 -6.2977 43 1 6.6918 0.5569 -5.3578 44 1 8.2885 1.8878 -8.3981 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588299625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:18 Heat of formation + Delta-G solvation = -19.659536 kcal Electronic energy + Delta-G solvation = -22406.174148 eV Core-core repulsion = 19129.884348 eV Total energy + Delta-G solvation = -3276.289800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = -0.09 seconds Orbital eigenvalues (eV) -40.92268 -39.69786 -36.67297 -34.90583 -33.27822 -32.53771 -32.27367 -30.16093 -29.36941 -27.44217 -25.79765 -24.38735 -23.79462 -22.68997 -21.13938 -20.00735 -19.13351 -17.53282 -17.20998 -16.59104 -16.28240 -16.12158 -15.94693 -15.21663 -14.57409 -14.44622 -14.23885 -13.94837 -13.77102 -13.55183 -13.21343 -12.81267 -12.70336 -12.59047 -12.40688 -12.24031 -12.06045 -11.63352 -11.58045 -11.34484 -10.99177 -10.53276 -10.47713 -10.39967 -10.17515 -9.94046 -9.72403 -9.60606 -9.35913 -9.19128 -8.95824 -8.88240 -8.30058 -5.94580 -3.97073 0.74015 0.93766 2.64570 2.80116 3.33486 3.40602 3.44461 3.52707 4.07570 4.28631 4.43990 4.49179 4.56370 4.61728 4.70177 4.77984 4.85905 4.93543 5.10743 5.12966 5.28475 5.30156 5.37562 5.39420 5.41157 5.41885 5.55542 5.69989 5.76855 5.83155 5.91301 6.13936 6.25170 6.33890 6.36223 6.55435 6.84478 7.01607 7.17849 7.24067 7.65887 7.75212 7.91064 8.06947 8.16012 8.48698 9.10895 9.66617 11.16807 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027999 B = 0.002495 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.794786 B =11220.315692 C =11351.931878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.178 3.822 3 H 0.112 0.888 4 C -0.144 4.144 5 C -0.069 4.069 6 C -0.174 4.174 7 C 0.096 3.904 8 N -0.484 5.484 9 C 0.114 3.886 10 N -0.617 5.617 11 C 0.069 3.931 12 C 0.515 3.485 13 O -0.531 6.531 14 C -0.136 4.136 15 C -0.104 4.104 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.724 -9.564 21.097 29.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.074 3.926 3 H 0.130 0.870 4 C -0.147 4.147 5 C -0.095 4.095 6 C -0.194 4.194 7 C -0.061 4.061 8 N -0.192 5.192 9 C -0.043 4.043 10 N -0.352 5.352 11 C -0.074 4.074 12 C 0.305 3.695 13 O -0.407 6.407 14 C -0.176 4.176 15 C -0.142 4.142 16 C -0.147 4.147 17 C -0.018 4.018 18 C -0.558 4.558 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.210 1.210 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.172 0.828 32 H 0.174 0.826 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.899 -8.345 21.756 28.785 hybrid contribution -0.117 -1.139 -1.430 1.832 sum -17.017 -9.483 20.326 28.154 Atomic orbital electron populations 1.22141 0.93746 1.02551 1.03074 1.19810 0.94185 0.97469 0.81143 0.86993 1.21195 1.00156 0.95525 0.97865 1.21615 0.97135 0.94115 0.96613 1.22154 1.00141 1.01510 0.95622 1.22816 0.94604 0.89973 0.98704 1.67739 1.20007 1.10826 1.20595 1.22762 0.92315 1.00348 0.88918 1.47997 1.46099 1.16740 1.24318 1.21962 0.99838 0.83097 1.02503 1.21177 0.77395 0.86436 0.84482 1.90694 1.56826 1.19087 1.74060 1.21827 1.01168 1.00571 0.94028 1.21471 0.97658 0.97940 0.97129 1.21644 0.99409 0.99136 0.94529 1.19102 0.93642 0.94591 0.94431 1.21318 1.25452 1.01105 1.07881 0.92722 1.25046 0.96549 0.94930 0.98087 1.69986 1.32927 1.12672 1.37882 0.86559 0.78606 0.79773 0.83192 1.19789 1.21051 1.21045 0.92067 0.91127 0.91338 0.84672 0.84738 0.82799 0.82609 0.92518 0.91002 0.90032 0.89207 0.89083 0.91770 0.91821 0.93527 0.93497 0.96578 0.96593 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.85 37.16 0.33 -0.74 16 2 C 0.18 1.67 2.96 -69.09 -0.20 1.46 16 3 H 0.11 1.26 6.68 -51.93 -0.35 0.91 16 4 C -0.14 -1.33 4.98 -104.48 -0.52 -1.85 16 5 C -0.07 -0.52 8.16 -39.28 -0.32 -0.84 16 6 C -0.17 -1.24 10.11 -39.44 -0.40 -1.63 16 7 C 0.10 0.82 11.18 -17.54 -0.20 0.63 16 8 N -0.48 -5.38 10.36 -13.26 -0.14 -5.52 16 9 C 0.11 1.20 10.83 -17.55 -0.19 1.01 16 10 N -0.62 -6.30 2.75 -175.27 -0.48 -6.78 16 11 C 0.07 0.46 8.28 59.85 0.50 0.95 16 12 C 0.52 7.21 7.67 -10.98 -0.08 7.13 16 13 O -0.53 -9.55 15.32 5.55 0.09 -9.46 16 14 C -0.14 -1.82 4.20 -27.89 -0.12 -1.94 16 15 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 16 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 19 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 20 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 22 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H 0.06 0.33 5.98 -51.93 -0.31 0.02 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.14 0.73 5.32 -52.49 -0.28 0.45 16 30 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 31 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.16 1.51 7.95 -52.49 -0.42 1.09 16 33 H 0.06 0.35 7.02 -51.93 -0.36 -0.02 16 34 H 0.07 0.33 5.65 -51.93 -0.29 0.04 16 35 H 0.08 0.50 6.29 -51.92 -0.33 0.17 16 36 H 0.09 1.07 8.11 -51.93 -0.42 0.64 16 37 H 0.09 1.03 7.40 -51.93 -0.38 0.65 16 38 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -35.22 356.64 -8.37 -43.59 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -6.91 Total: -3.54 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.01 Total: -13.67 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.12 Total: -39.25 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.22 -8.37 -43.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588299625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.926 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.09 seconds