Wall clock time and date at job start Tue Mar 31 2020 07:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47017 * 2 1 4 4 C 1.50698 * 109.47021 * 119.99427 * 2 1 3 5 5 C 1.38674 * 120.41640 * 62.19412 * 4 2 1 6 6 C 1.38629 * 118.42021 * 179.78141 * 5 4 2 7 7 C 1.38232 * 119.15996 * 0.51264 * 6 5 4 8 8 N 1.31853 * 120.76144 * 359.72230 * 7 6 5 9 9 C 1.31888 * 121.72718 * 0.02562 * 8 7 6 10 10 N 1.46492 * 109.47241 * 239.99779 * 2 1 3 11 11 C 1.46499 * 119.99987 * 306.43614 * 10 2 1 12 12 C 1.34786 * 120.00318 * 126.16433 * 10 2 1 13 13 O 1.21284 * 119.99611 * 359.97438 * 12 10 2 14 14 C 1.50694 * 120.00397 * 179.97438 * 12 10 2 15 15 C 1.52991 * 109.47286 * 179.97438 * 14 12 10 16 16 C 1.53004 * 109.47346 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47411 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47162 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99598 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99916 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00137 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46540 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46774 * 119.99730 * 22 20 18 25 25 H 1.48499 * 109.47025 * 239.99997 * 22 20 18 26 26 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47055 * 300.00296 * 1 2 3 28 28 H 1.09000 * 109.46833 * 60.00340 * 1 2 3 29 29 H 1.08001 * 120.78915 * 0.02562 * 5 4 2 30 30 H 1.08000 * 120.42038 * 180.21743 * 6 5 4 31 31 H 1.07992 * 119.61949 * 179.74543 * 7 6 5 32 32 H 1.07995 * 119.61480 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47563 * 273.91720 * 11 10 2 34 34 H 1.08994 * 109.47185 * 33.91969 * 11 10 2 35 35 H 1.09007 * 109.47105 * 153.91857 * 11 10 2 36 36 H 1.09003 * 109.46976 * 300.00336 * 14 12 10 37 37 H 1.09004 * 109.46717 * 59.99660 * 14 12 10 38 38 H 1.09003 * 109.47685 * 300.00266 * 15 14 12 39 39 H 1.09004 * 109.47223 * 60.00334 * 15 14 12 40 40 H 1.09003 * 109.46850 * 300.00659 * 16 15 14 41 41 H 1.08995 * 109.46972 * 59.99755 * 16 15 14 42 42 H 1.09000 * 109.46919 * 300.00144 * 17 16 15 43 43 H 1.09003 * 109.46932 * 59.99993 * 17 16 15 44 44 H 0.97000 * 120.00074 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.7404 -2.0503 1.4360 6 6 2.2273 -2.6637 2.5799 7 6 2.9732 -1.9218 3.4765 8 7 3.2272 -0.6478 3.2508 9 6 2.7845 -0.0330 2.1712 10 7 2.0184 -0.6906 -1.1961 11 6 1.5521 -2.0455 -1.5013 12 6 2.8924 -0.0775 -2.0187 13 8 3.2743 1.0463 -1.7689 14 6 3.3952 -0.7881 -3.2488 15 6 4.3671 0.1221 -4.0022 16 6 4.8772 -0.5992 -5.2514 17 6 5.8496 0.3109 -6.0045 18 6 6.3524 -0.3998 -7.2347 19 1 6.0120 -1.4004 -7.4572 20 6 7.2461 0.2276 -8.0764 21 7 7.6594 1.4465 -7.8061 22 14 7.8688 -0.6530 -9.6016 23 1 7.2548 -2.0029 -9.6789 24 1 7.4998 0.1281 -10.8094 25 1 9.3463 -0.7840 -9.5290 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.1511 -2.6038 0.7200 30 1 2.0224 -3.7068 2.7705 31 1 3.3527 -2.3912 4.3720 32 1 3.0124 1.0118 2.0207 33 1 2.1742 -2.7707 -0.9766 34 1 0.5166 -2.1546 -1.1791 35 1 1.6187 -2.2193 -2.5753 36 1 3.9080 -1.7040 -2.9551 37 1 2.5532 -1.0346 -3.8956 38 1 3.8540 1.0379 -4.2959 39 1 5.2092 0.3689 -3.3555 40 1 5.3902 -1.5151 -4.9581 41 1 4.0349 -0.8457 -5.8979 42 1 5.3369 1.2269 -6.2977 43 1 6.6918 0.5569 -5.3578 44 1 8.2885 1.8878 -8.3981 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588299625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:16 Heat of formation + Delta-G solvation = -41.551623 kcal Electronic energy + Delta-G solvation = -22407.123460 eV Core-core repulsion = 19129.884348 eV Total energy + Delta-G solvation = -3277.239112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.67985 -40.60368 -37.58961 -36.59556 -34.71321 -33.86223 -32.97239 -31.44162 -30.43130 -28.08626 -27.51060 -25.24776 -24.48162 -24.16783 -22.24455 -21.62363 -20.04559 -18.46208 -18.22054 -18.02354 -17.36180 -17.10584 -16.91457 -16.49871 -16.07161 -15.60739 -15.04015 -14.69652 -14.66599 -14.54877 -14.35557 -14.10834 -13.65381 -13.57880 -13.42835 -13.27822 -13.20461 -12.89604 -12.84410 -12.73438 -12.29833 -12.16106 -12.13360 -11.97751 -11.38879 -11.34093 -11.13799 -10.90543 -10.70808 -10.56170 -10.47656 -9.99660 -9.69141 -8.18989 -6.31302 0.08640 0.31561 1.40320 1.41453 1.54892 1.60211 1.98461 2.41807 2.85691 3.13842 3.42682 3.56858 3.74033 3.87990 4.00370 4.01884 4.05693 4.10953 4.21821 4.27057 4.36974 4.57320 4.59958 4.63850 4.71373 4.77375 4.79509 4.83556 4.85182 4.89673 4.97537 5.14278 5.17512 5.22009 5.25847 5.32327 5.36732 5.55218 5.57398 5.75442 5.77460 5.87727 6.24789 6.32471 6.87540 6.99384 7.15804 7.38525 8.93606 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027999 B = 0.002495 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.794786 B =11220.315692 C =11351.931878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.176 3.824 3 H 0.080 0.920 4 C -0.149 4.149 5 C -0.066 4.066 6 C -0.165 4.165 7 C 0.082 3.918 8 N -0.517 5.517 9 C 0.087 3.913 10 N -0.607 5.607 11 C 0.056 3.944 12 C 0.509 3.491 13 O -0.587 6.587 14 C -0.125 4.125 15 C -0.096 4.096 16 C -0.094 4.094 17 C 0.018 3.982 18 C -0.540 4.540 19 H 0.067 0.933 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.256 1.256 24 H -0.279 1.279 25 H -0.280 1.280 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.176 0.824 32 H 0.144 0.856 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.060 0.940 41 H 0.063 0.937 42 H -0.015 1.015 43 H -0.018 1.018 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.664 -13.669 20.786 31.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.072 3.928 3 H 0.099 0.901 4 C -0.152 4.152 5 C -0.092 4.092 6 C -0.184 4.184 7 C -0.075 4.075 8 N -0.226 5.226 9 C -0.070 4.070 10 N -0.339 5.339 11 C -0.085 4.085 12 C 0.299 3.701 13 O -0.467 6.467 14 C -0.164 4.164 15 C -0.135 4.135 16 C -0.131 4.131 17 C -0.019 4.019 18 C -0.577 4.577 19 H 0.085 0.915 20 C -0.205 4.205 21 N -0.580 5.580 22 Si 0.794 3.206 23 H -0.180 1.180 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.183 0.817 30 H 0.188 0.812 31 H 0.193 0.807 32 H 0.162 0.838 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.003 0.997 43 H 0.001 0.999 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.884 -12.497 21.468 31.203 hybrid contribution 0.479 0.135 -1.245 1.341 sum -18.405 -12.362 20.223 30.009 Atomic orbital electron populations 1.22090 0.91304 1.04116 1.03135 1.19819 0.95894 0.95999 0.81055 0.90138 1.21139 1.00242 0.96518 0.97266 1.21959 0.96834 0.93149 0.97300 1.22539 0.98417 1.02914 0.94544 1.23325 0.94856 0.89336 1.00011 1.67690 1.21189 1.12510 1.21167 1.22750 0.93827 1.00442 0.89975 1.48016 1.44481 1.17931 1.23474 1.22338 1.01658 0.80823 1.03715 1.21302 0.77802 0.85883 0.85122 1.90681 1.59107 1.21521 1.75427 1.21697 1.01102 0.99785 0.93815 1.21257 0.97882 0.98105 0.96208 1.21435 0.98470 0.98203 0.95034 1.19065 0.93730 0.94702 0.94411 1.21782 1.25672 1.01739 1.08552 0.91468 1.26113 0.96746 0.95694 1.01970 1.70145 1.33700 1.14615 1.39515 0.85321 0.77954 0.79024 0.78268 1.17956 1.20456 1.20533 0.89613 0.90593 0.91830 0.81750 0.81206 0.80657 0.83825 0.91212 0.88177 0.88887 0.86784 0.86000 0.93816 0.94322 0.92160 0.91813 0.99708 0.99928 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.85 71.98 0.64 -1.09 16 2 C 0.18 3.22 2.96 44.25 0.13 3.35 16 3 H 0.08 1.99 6.68 -2.39 -0.02 1.97 16 4 C -0.15 -2.62 4.98 -19.78 -0.10 -2.72 16 5 C -0.07 -0.79 8.16 22.47 0.18 -0.60 16 6 C -0.16 -1.78 10.11 22.36 0.23 -1.56 16 7 C 0.08 1.27 11.18 84.69 0.95 2.22 16 8 N -0.52 -11.71 10.36 -195.85 -2.03 -13.74 16 9 C 0.09 1.93 10.83 84.67 0.92 2.85 16 10 N -0.61 -11.36 2.75 -826.80 -2.28 -13.63 16 11 C 0.06 0.50 8.28 127.77 1.06 1.56 16 12 C 0.51 14.12 7.67 87.65 0.67 14.79 16 13 O -0.59 -22.40 15.32 -3.04 -0.05 -22.45 16 14 C -0.12 -3.11 4.20 29.84 0.13 -2.99 16 15 C -0.10 -3.55 4.50 30.59 0.14 -3.41 16 16 C -0.09 -3.85 5.15 30.60 0.16 -3.70 16 17 C 0.02 1.00 4.97 29.85 0.15 1.15 16 18 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 19 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 20 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 21 N -0.94 -59.63 13.29 21.45 0.28 -59.35 16 22 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 26 H 0.09 0.57 5.98 -2.39 -0.01 0.55 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.17 0.90 5.32 -2.91 -0.02 0.89 16 30 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 31 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.14 3.27 7.95 -2.91 -0.02 3.24 16 33 H 0.07 0.51 7.02 -2.39 -0.02 0.50 16 34 H 0.10 0.37 5.65 -2.39 -0.01 0.36 16 35 H 0.09 0.69 6.29 -2.38 -0.01 0.67 16 36 H 0.11 2.33 8.11 -2.39 -0.02 2.31 16 37 H 0.12 2.32 7.40 -2.38 -0.02 2.30 16 38 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.04 1.58 8.10 -2.38 -0.02 1.56 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 43 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 44 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -81.55 356.64 4.87 -76.67 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.97 Total: 6.87 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 5.94 Total: -21.36 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -4.02 Total: -86.72 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.05 Total: -22.45 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -81.55 4.87 -76.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588299625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.121 kcal (2) G-P(sol) polarization free energy of solvation -81.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds