Wall clock time and date at job start Tue Mar 31 2020 07:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 C 1.38233 * 119.61966 * 84.99948 * 4 2 1 6 6 C 1.38626 * 119.16248 * 179.97438 * 5 4 2 7 7 C 1.38669 * 118.42371 * 0.02562 * 6 5 4 8 8 C 1.38188 * 119.16041 * 359.97438 * 7 6 5 9 9 N 1.31854 * 119.62287 * 264.72157 * 4 2 1 10 10 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 11 11 C 1.46499 * 120.00062 * 60.00143 * 10 2 1 12 12 C 1.34779 * 119.99726 * 239.99897 * 10 2 1 13 13 O 1.21279 * 120.00410 * 359.97438 * 12 10 2 14 14 C 1.50703 * 119.99541 * 179.97438 * 12 10 2 15 15 C 1.53000 * 109.46653 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.46975 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47328 * 180.02562 * 16 15 14 18 18 C 1.50708 * 109.47326 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00008 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00027 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99802 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47199 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46808 * 120.00005 * 22 20 18 25 25 H 1.48494 * 109.47291 * 239.99749 * 22 20 18 26 26 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 28 28 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 29 29 H 1.08008 * 120.41357 * 359.97438 * 5 4 2 30 30 H 1.08003 * 120.78760 * 180.02562 * 6 5 4 31 31 H 1.07989 * 120.42129 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.61493 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47391 * 89.99876 * 11 10 2 34 34 H 1.09001 * 109.46813 * 329.99933 * 11 10 2 35 35 H 1.09004 * 109.47041 * 210.00060 * 11 10 2 36 36 H 1.08996 * 109.47057 * 299.99739 * 14 12 10 37 37 H 1.08996 * 109.47084 * 60.00703 * 14 12 10 38 38 H 1.08994 * 109.48028 * 300.00003 * 15 14 12 39 39 H 1.09007 * 109.47101 * 60.00827 * 15 14 12 40 40 H 1.08998 * 109.47634 * 300.00696 * 16 15 14 41 41 H 1.08999 * 109.47136 * 60.00615 * 16 15 14 42 42 H 1.09007 * 109.47491 * 300.00297 * 17 16 15 43 43 H 1.09000 * 109.47122 * 60.00234 * 17 16 15 44 44 H 0.96998 * 119.99870 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 2.1613 -0.0130 -2.4171 6 6 2.6247 -0.6756 -3.5431 7 6 2.9421 -2.0210 -3.4333 8 6 2.7875 -2.6520 -2.2136 9 7 2.3489 -1.9884 -1.1617 10 7 2.0183 -0.6907 1.1961 11 6 1.6645 -2.0933 1.4278 12 6 2.7932 -0.0358 2.0833 13 8 3.0866 1.1252 1.8912 14 6 3.2951 -0.7462 3.3139 15 6 4.1458 0.2152 4.1464 16 6 4.6548 -0.5058 5.3962 17 6 5.5050 0.4558 6.2290 18 6 6.0069 -0.2546 7.4597 19 1 5.7460 -1.2885 7.6305 20 6 6.7992 0.4156 8.3676 21 7 7.1173 1.6746 8.1593 22 14 7.4207 -0.4648 9.8934 23 1 6.9260 -1.8649 9.8931 24 1 8.9058 -0.4651 9.8942 25 1 6.9253 0.2357 11.1054 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.9041 1.0349 -2.4662 30 1 2.7360 -0.1563 -4.4835 31 1 3.3063 -2.5686 -4.2898 32 1 3.0329 -3.6995 -2.1197 33 1 2.4158 -2.7378 0.9713 34 1 0.6905 -2.3003 0.9844 35 1 1.6239 -2.2855 2.5000 36 1 2.4472 -1.0883 3.9071 37 1 3.9006 -1.6027 3.0175 38 1 4.9938 0.5571 3.5531 39 1 3.5407 1.0721 4.4429 40 1 3.8067 -0.8474 5.9895 41 1 5.2598 -1.3628 5.1001 42 1 6.3533 0.7977 5.6359 43 1 4.8997 1.3126 6.5251 44 1 7.6744 2.1461 8.7982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588327574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:58 Heat of formation + Delta-G solvation = -16.466437 kcal Electronic energy + Delta-G solvation = -22401.707078 eV Core-core repulsion = 19125.555741 eV Total energy + Delta-G solvation = -3276.151337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.85113 -39.55564 -36.28571 -34.81636 -33.04073 -32.73137 -32.34631 -30.18208 -29.30249 -26.91903 -25.74957 -24.43668 -23.83722 -22.59977 -21.15455 -19.93935 -18.96793 -17.38679 -17.06730 -16.39482 -16.14513 -16.00172 -15.72523 -15.20171 -14.61578 -14.43283 -14.35469 -13.83273 -13.57535 -13.43403 -13.05346 -12.64834 -12.51933 -12.47983 -12.31691 -12.13122 -11.95003 -11.56146 -11.50706 -11.38737 -10.95266 -10.46065 -10.44264 -10.33510 -10.21130 -9.88888 -9.61512 -9.54602 -9.32111 -9.15436 -8.91721 -8.60283 -8.26818 -5.91514 -3.93692 0.75093 0.94675 2.78332 2.96260 3.35796 3.42798 3.46983 3.47255 3.89767 4.35753 4.51338 4.52226 4.71973 4.73607 4.80755 4.91223 5.04217 5.08365 5.22876 5.31058 5.39422 5.41938 5.43494 5.44811 5.58404 5.59220 5.73649 5.82261 5.87963 5.92550 5.99629 6.22378 6.35523 6.37277 6.48423 6.63404 6.91648 7.09084 7.26172 7.43282 7.67102 7.79168 7.95590 8.10644 8.31621 8.52579 9.14387 9.69754 11.19923 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030148 B = 0.002470 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.521925 B =11332.566762 C =11477.525493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.185 3.815 3 H 0.116 0.884 4 C 0.123 3.877 5 C -0.165 4.165 6 C -0.073 4.073 7 C -0.179 4.179 8 C 0.100 3.900 9 N -0.470 5.470 10 N -0.607 5.607 11 C 0.092 3.908 12 C 0.514 3.486 13 O -0.541 6.541 14 C -0.134 4.134 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.054 3.946 21 N -0.896 5.896 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.284 1.284 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.156 0.844 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.811 -8.493 -25.378 30.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.080 3.920 3 H 0.134 0.866 4 C -0.016 4.016 5 C -0.185 4.185 6 C -0.099 4.099 7 C -0.199 4.199 8 C -0.057 4.057 9 N -0.179 5.179 10 N -0.341 5.341 11 C -0.051 4.051 12 C 0.304 3.696 13 O -0.418 6.418 14 C -0.174 4.174 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.018 4.018 18 C -0.556 4.556 19 H 0.073 0.927 20 C -0.147 4.147 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.173 0.827 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.640 -8.175 -24.588 29.761 hybrid contribution 0.534 -0.123 -0.166 0.573 sum -14.106 -8.298 -24.755 29.675 Atomic orbital electron populations 1.22105 0.93432 1.02842 1.02956 1.19883 0.94337 0.96858 0.80944 0.86601 1.21643 0.94706 0.90509 0.94697 1.21906 1.01639 1.01562 0.93415 1.21571 0.95122 0.94509 0.98656 1.22149 1.02303 0.95774 0.99648 1.22823 0.94540 1.00122 0.88214 1.67604 1.10740 1.08442 1.31147 1.47766 1.51517 1.13044 1.21726 1.21770 1.01454 0.81174 1.00710 1.21146 0.76960 0.86967 0.84528 1.90672 1.57255 1.17213 1.76629 1.21793 1.01349 1.00422 0.93853 1.21459 0.98754 0.97477 0.96435 1.21641 0.99313 0.99192 0.94581 1.19105 0.94470 0.94289 0.93916 1.21332 1.30465 0.97766 1.06067 0.92704 1.25049 0.96447 0.94896 0.98261 1.69992 1.37652 1.09549 1.36346 0.86558 0.78535 0.79820 0.83209 1.19778 1.21082 1.21070 0.91851 0.91134 0.91344 0.84655 0.84786 0.84886 0.82691 0.91112 0.91716 0.91754 0.89147 0.89201 0.91938 0.91860 0.93496 0.93522 0.96620 0.96589 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.15 37.16 0.34 -0.93 16 2 C 0.18 1.99 2.91 -69.08 -0.20 1.79 16 3 H 0.12 1.42 6.87 -51.93 -0.36 1.06 16 4 C 0.12 1.26 5.88 -82.58 -0.49 0.78 16 5 C -0.16 -1.39 9.77 -39.44 -0.39 -1.78 16 6 C -0.07 -0.51 10.18 -39.28 -0.40 -0.91 16 7 C -0.18 -1.22 10.11 -39.44 -0.40 -1.62 16 8 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 9 N -0.47 -4.82 7.23 -9.47 -0.07 -4.89 16 10 N -0.61 -7.38 2.69 -175.26 -0.47 -7.86 16 11 C 0.09 0.88 8.61 59.85 0.52 1.39 16 12 C 0.51 7.93 7.67 -10.98 -0.08 7.84 16 13 O -0.54 -10.32 15.31 5.56 0.09 -10.24 16 14 C -0.13 -1.97 4.25 -27.88 -0.12 -2.09 16 15 C -0.10 -1.95 4.50 -26.73 -0.12 -2.07 16 16 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 19 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.95 13.29 55.43 0.74 -27.22 16 22 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H 0.06 0.50 6.66 -51.93 -0.35 0.15 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 30 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 31 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.07 0.71 6.95 -51.93 -0.36 0.34 16 34 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 35 H 0.06 0.55 6.44 -51.93 -0.33 0.22 16 36 H 0.09 1.15 7.40 -51.93 -0.38 0.77 16 37 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 38 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -35.21 360.48 -8.68 -43.89 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -7.15 Total: -3.24 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.22 Total: -13.08 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.20 Total: -39.96 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.21 -8.68 -43.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588327574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.423 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds