Wall clock time and date at job start Tue Mar 31 2020 07:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 C 1.38233 * 119.61966 * 84.99948 * 4 2 1 6 6 C 1.38626 * 119.16248 * 179.97438 * 5 4 2 7 7 C 1.38669 * 118.42371 * 0.02562 * 6 5 4 8 8 C 1.38188 * 119.16041 * 359.97438 * 7 6 5 9 9 N 1.31854 * 119.62287 * 264.72157 * 4 2 1 10 10 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 11 11 C 1.46499 * 120.00062 * 60.00143 * 10 2 1 12 12 C 1.34779 * 119.99726 * 239.99897 * 10 2 1 13 13 O 1.21279 * 120.00410 * 359.97438 * 12 10 2 14 14 C 1.50703 * 119.99541 * 179.97438 * 12 10 2 15 15 C 1.53000 * 109.46653 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.46975 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47328 * 180.02562 * 16 15 14 18 18 C 1.50708 * 109.47326 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00008 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00027 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99802 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47199 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46808 * 120.00005 * 22 20 18 25 25 H 1.48494 * 109.47291 * 239.99749 * 22 20 18 26 26 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 28 28 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 29 29 H 1.08008 * 120.41357 * 359.97438 * 5 4 2 30 30 H 1.08003 * 120.78760 * 180.02562 * 6 5 4 31 31 H 1.07989 * 120.42129 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.61493 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47391 * 89.99876 * 11 10 2 34 34 H 1.09001 * 109.46813 * 329.99933 * 11 10 2 35 35 H 1.09004 * 109.47041 * 210.00060 * 11 10 2 36 36 H 1.08996 * 109.47057 * 299.99739 * 14 12 10 37 37 H 1.08996 * 109.47084 * 60.00703 * 14 12 10 38 38 H 1.08994 * 109.48028 * 300.00003 * 15 14 12 39 39 H 1.09007 * 109.47101 * 60.00827 * 15 14 12 40 40 H 1.08998 * 109.47634 * 300.00696 * 16 15 14 41 41 H 1.08999 * 109.47136 * 60.00615 * 16 15 14 42 42 H 1.09007 * 109.47491 * 300.00297 * 17 16 15 43 43 H 1.09000 * 109.47122 * 60.00234 * 17 16 15 44 44 H 0.96998 * 119.99870 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 2.1613 -0.0130 -2.4171 6 6 2.6247 -0.6756 -3.5431 7 6 2.9421 -2.0210 -3.4333 8 6 2.7875 -2.6520 -2.2136 9 7 2.3489 -1.9884 -1.1617 10 7 2.0183 -0.6907 1.1961 11 6 1.6645 -2.0933 1.4278 12 6 2.7932 -0.0358 2.0833 13 8 3.0866 1.1252 1.8912 14 6 3.2951 -0.7462 3.3139 15 6 4.1458 0.2152 4.1464 16 6 4.6548 -0.5058 5.3962 17 6 5.5050 0.4558 6.2290 18 6 6.0069 -0.2546 7.4597 19 1 5.7460 -1.2885 7.6305 20 6 6.7992 0.4156 8.3676 21 7 7.1173 1.6746 8.1593 22 14 7.4207 -0.4648 9.8934 23 1 6.9260 -1.8649 9.8931 24 1 8.9058 -0.4651 9.8942 25 1 6.9253 0.2357 11.1054 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.9041 1.0349 -2.4662 30 1 2.7360 -0.1563 -4.4835 31 1 3.3063 -2.5686 -4.2898 32 1 3.0329 -3.6995 -2.1197 33 1 2.4158 -2.7378 0.9713 34 1 0.6905 -2.3003 0.9844 35 1 1.6239 -2.2855 2.5000 36 1 2.4472 -1.0883 3.9071 37 1 3.9006 -1.6027 3.0175 38 1 4.9938 0.5571 3.5531 39 1 3.5407 1.0721 4.4429 40 1 3.8067 -0.8474 5.9895 41 1 5.2598 -1.3628 5.1001 42 1 6.3533 0.7977 5.6359 43 1 4.8997 1.3126 6.5251 44 1 7.6744 2.1461 8.7982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588327574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:57 Heat of formation + Delta-G solvation = -37.138311 kcal Electronic energy + Delta-G solvation = -22402.603477 eV Core-core repulsion = 19125.555741 eV Total energy + Delta-G solvation = -3277.047737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61776 -40.54509 -37.31051 -36.56187 -34.68598 -33.63023 -33.32023 -31.43725 -30.47377 -27.79431 -27.49481 -25.35078 -24.48030 -24.09852 -22.26358 -21.64147 -20.01760 -18.45091 -18.17732 -17.90949 -17.24526 -16.99485 -16.57611 -16.49521 -16.03281 -15.75776 -15.22532 -14.70024 -14.62164 -14.49526 -14.28405 -13.93734 -13.64472 -13.56301 -13.39292 -13.18960 -13.13180 -12.93938 -12.84010 -12.69589 -12.29671 -12.16119 -12.12846 -12.09227 -11.38353 -11.33725 -11.12870 -10.82097 -10.76823 -10.55525 -10.44595 -9.92530 -9.53228 -8.18504 -6.30667 0.14679 0.37571 1.40493 1.41707 1.55306 1.61526 2.00728 2.42298 2.85492 3.14144 3.22545 3.64550 3.79529 4.03465 4.04605 4.11189 4.14476 4.17638 4.26895 4.29222 4.36888 4.58685 4.63150 4.66128 4.72922 4.79843 4.81854 4.85028 4.89123 4.90644 5.12898 5.18112 5.21666 5.22802 5.28613 5.32587 5.36738 5.56466 5.60120 5.78009 5.79989 5.88117 6.25644 6.40568 6.87804 7.03148 7.19001 7.38896 8.94131 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030148 B = 0.002470 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.521925 B =11332.566762 C =11477.525493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.180 3.820 3 H 0.093 0.907 4 C 0.101 3.899 5 C -0.176 4.176 6 C -0.076 4.076 7 C -0.174 4.174 8 C 0.085 3.915 9 N -0.490 5.490 10 N -0.598 5.598 11 C 0.089 3.911 12 C 0.508 3.492 13 O -0.591 6.591 14 C -0.124 4.124 15 C -0.094 4.094 16 C -0.094 4.094 17 C 0.019 3.981 18 C -0.540 4.540 19 H 0.066 0.934 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.257 1.257 24 H -0.279 1.279 25 H -0.278 1.278 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.145 0.855 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.039 0.961 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.059 0.941 42 H -0.017 1.017 43 H -0.015 1.015 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.605 -11.258 -26.168 32.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.075 3.925 3 H 0.111 0.889 4 C -0.038 4.038 5 C -0.196 4.196 6 C -0.102 4.102 7 C -0.194 4.194 8 C -0.072 4.072 9 N -0.200 5.200 10 N -0.330 5.330 11 C -0.052 4.052 12 C 0.299 3.701 13 O -0.472 6.472 14 C -0.163 4.163 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.018 4.018 18 C -0.578 4.578 19 H 0.084 0.916 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.795 3.205 23 H -0.181 1.181 24 H -0.205 1.205 25 H -0.204 1.204 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.163 0.837 30 H 0.178 0.822 31 H 0.179 0.821 32 H 0.194 0.806 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.002 0.998 43 H 0.004 0.996 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.471 -10.984 -25.407 31.710 hybrid contribution 0.786 0.739 -0.037 1.080 sum -14.685 -10.245 -25.444 31.113 Atomic orbital electron populations 1.22033 0.91471 1.03374 1.03459 1.19968 0.95842 0.95749 0.80926 0.88925 1.21549 0.96338 0.91026 0.94853 1.22113 1.01798 1.02207 0.93497 1.21947 0.94178 0.94863 0.99177 1.22507 1.00955 0.95821 1.00092 1.23282 0.94376 1.01152 0.88346 1.67533 1.11561 1.08505 1.32388 1.47815 1.49961 1.13910 1.21272 1.21936 1.02137 0.79366 1.01783 1.21244 0.77233 0.86461 0.85203 1.90655 1.59413 1.19279 1.77818 1.21667 1.01820 0.99459 0.93371 1.21244 0.98402 0.97771 0.95807 1.21438 0.98942 0.98066 0.94746 1.19059 0.93848 0.94646 0.94277 1.21778 1.30753 0.98426 1.06817 0.91569 1.26111 0.96557 0.95672 1.02160 1.70146 1.38410 1.11476 1.37896 0.85315 0.77895 0.79063 0.78254 1.18072 1.20465 1.20393 0.91161 0.91756 0.89723 0.83707 0.82183 0.82066 0.80620 0.91155 0.90303 0.90356 0.86357 0.87172 0.94189 0.93689 0.91938 0.92255 0.99817 0.99620 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.15 71.98 0.66 -1.62 16 2 C 0.18 3.89 2.91 44.24 0.13 4.02 16 3 H 0.09 2.42 6.87 -2.39 -0.02 2.40 16 4 C 0.10 2.00 5.88 42.55 0.25 2.25 16 5 C -0.18 -2.82 9.77 22.36 0.22 -2.60 16 6 C -0.08 -0.91 10.18 22.47 0.23 -0.68 16 7 C -0.17 -1.94 10.11 22.36 0.23 -1.71 16 8 C 0.09 1.22 11.18 84.67 0.95 2.16 16 9 N -0.49 -9.44 7.23 -183.88 -1.33 -10.77 16 10 N -0.60 -14.24 2.69 -826.79 -2.23 -16.46 16 11 C 0.09 1.54 8.61 127.77 1.10 2.64 16 12 C 0.51 15.79 7.67 87.66 0.67 16.46 16 13 O -0.59 -23.65 15.31 -3.02 -0.05 -23.70 16 14 C -0.12 -3.50 4.25 29.85 0.13 -3.37 16 15 C -0.09 -3.63 4.50 30.59 0.14 -3.50 16 16 C -0.09 -4.03 5.15 30.59 0.16 -3.87 16 17 C 0.02 1.06 4.97 29.85 0.15 1.21 16 18 C -0.54 -31.92 9.11 25.60 0.23 -31.68 16 19 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 20 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 21 N -0.94 -59.97 13.29 21.45 0.28 -59.68 16 22 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H 0.07 1.00 6.66 -2.39 -0.02 0.98 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 30 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 31 H 0.16 0.81 8.06 -2.92 -0.02 0.79 16 32 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.07 1.27 6.95 -2.39 -0.02 1.25 16 34 H 0.08 1.15 6.43 -2.39 -0.02 1.14 16 35 H 0.08 1.13 6.44 -2.38 -0.02 1.11 16 36 H 0.12 2.70 7.40 -2.39 -0.02 2.68 16 37 H 0.11 2.69 8.11 -2.39 -0.02 2.67 16 38 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.04 1.87 8.10 -2.38 -0.02 1.85 16 40 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 42 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 43 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 44 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -78.98 360.48 5.37 -73.62 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.96 Total: 9.80 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 5.70 Total: -20.30 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -3.27 Total: -86.92 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.05 Total: -23.70 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -78.98 5.37 -73.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588327574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.479 kcal (2) G-P(sol) polarization free energy of solvation -78.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds