Wall clock time and date at job start Tue Mar 31 2020 08:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46726 * 2 1 4 4 C 1.53005 * 109.47009 * 240.00411 * 2 1 3 5 5 C 1.50700 * 109.46992 * 65.00227 * 4 2 1 6 6 H 1.07993 * 120.00436 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99407 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99568 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00150 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47024 * 90.00463 * 9 7 5 11 11 H 1.48507 * 109.46812 * 210.00099 * 9 7 5 12 12 H 1.48495 * 109.47223 * 330.00252 * 9 7 5 13 13 C 1.52993 * 109.46872 * 120.00239 * 2 1 3 14 14 N 1.46498 * 109.47456 * 294.99988 * 13 2 1 15 15 C 1.39047 * 120.00045 * 180.02562 * 14 13 2 16 16 C 1.39223 * 119.92993 * 180.02562 * 15 14 13 17 17 C 1.37609 * 120.06901 * 180.02562 * 16 15 14 18 18 C 1.39797 * 119.93086 * 359.97146 * 17 16 15 19 19 C 1.47518 * 120.06900 * 179.97438 * 18 17 16 20 20 O 1.21602 * 119.99735 * 24.50592 * 19 18 17 21 21 N 1.34764 * 120.00207 * 204.22666 * 19 18 17 22 22 C 1.46508 * 120.00215 * 178.07426 * 21 19 18 23 23 C 1.46500 * 120.00100 * 358.07187 * 21 19 18 24 24 C 1.39797 * 119.86123 * 0.25541 * 18 17 16 25 25 C 1.37609 * 119.93121 * 359.51553 * 24 18 17 26 26 H 1.09001 * 109.47459 * 299.99967 * 1 2 3 27 27 H 1.09002 * 109.47327 * 59.99898 * 1 2 3 28 28 H 1.08996 * 109.47355 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46698 * 185.00264 * 4 2 1 30 30 H 1.09001 * 109.46848 * 304.99608 * 4 2 1 31 31 H 0.96996 * 119.99598 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47460 * 174.99788 * 13 2 1 33 33 H 1.08998 * 109.47175 * 55.00427 * 13 2 1 34 34 H 0.97002 * 119.99828 * 0.02562 * 14 13 2 35 35 H 1.08003 * 119.96228 * 359.97081 * 16 15 14 36 36 H 1.08006 * 120.03150 * 179.97438 * 17 16 15 37 37 H 1.08996 * 109.47278 * 90.00136 * 22 21 19 38 38 H 1.09002 * 109.46890 * 210.00162 * 22 21 19 39 39 H 1.09000 * 109.46787 * 329.99915 * 22 21 19 40 40 H 1.09005 * 109.46998 * 27.49538 * 23 21 19 41 41 H 1.09003 * 109.47496 * 147.49281 * 23 21 19 42 42 H 1.08996 * 109.47428 * 267.49001 * 23 21 19 43 43 H 1.08000 * 120.03235 * 179.74800 * 24 18 17 44 44 H 1.07998 * 119.96567 * 180.21221 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0573 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9933 -0.4015 -3.7283 8 7 1.6450 0.2776 -4.7994 9 14 2.9648 -1.9874 -3.9028 10 1 2.0265 -3.1324 -4.0197 11 1 3.8135 -1.9166 -5.1194 12 1 3.8268 -2.1738 -2.7081 13 6 2.0399 -0.7213 1.2492 14 7 1.6524 0.0352 2.4424 15 6 2.0072 -0.4275 3.7046 16 6 1.6377 0.2923 4.8376 17 6 1.9879 -0.1628 6.0882 18 6 2.7149 -1.3495 6.2203 19 6 3.0924 -1.8398 7.5594 20 8 2.4409 -1.5124 8.5327 21 7 4.1557 -2.6551 7.7035 22 6 4.5560 -3.1081 9.0381 23 6 4.9114 -3.0884 6.5257 24 6 3.0885 -2.0675 5.0805 25 6 2.7313 -1.6097 3.8329 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1263 -0.7994 -1.2056 30 1 1.6054 -1.7198 -1.2952 31 1 1.8922 -0.0453 -5.6800 32 1 3.1262 -0.7996 1.2056 33 1 1.6053 -1.7198 1.2950 34 1 1.1482 0.8590 2.3518 35 1 1.0764 1.2093 4.7348 36 1 1.7012 0.3964 6.9667 37 1 4.0406 -4.0387 9.2756 38 1 5.6331 -3.2741 9.0575 39 1 4.2921 -2.3485 9.7739 40 1 4.8236 -2.3370 5.7409 41 1 5.9607 -3.2136 6.7930 42 1 4.5124 -4.0371 6.1667 43 1 3.6537 -2.9825 5.1792 44 1 3.0167 -2.1657 2.9522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589820836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:49 Heat of formation + Delta-G solvation = 6.505089 kcal Electronic energy + Delta-G solvation = -22297.102890 eV Core-core repulsion = 19021.947673 eV Total energy + Delta-G solvation = -3275.155217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55295 -38.92290 -36.76653 -35.88747 -34.17382 -32.23557 -31.29839 -29.86565 -28.20709 -27.54966 -26.64029 -25.71026 -23.10871 -22.70623 -21.55514 -19.96185 -19.40242 -17.51848 -17.30672 -16.89969 -16.36381 -15.99381 -15.45619 -14.86793 -14.72215 -14.34906 -14.15293 -13.79608 -13.62029 -13.48432 -13.21611 -13.10804 -12.93317 -12.69770 -12.45634 -12.37225 -12.17937 -11.92250 -11.68706 -11.17454 -10.97721 -10.83396 -10.62986 -10.19844 -10.01288 -9.86109 -9.81779 -9.70163 -9.21192 -9.08787 -8.91501 -8.61356 -7.42935 -6.11398 -4.09859 1.07035 1.38357 2.77185 2.84353 3.24595 3.32828 3.34305 3.47956 3.84996 4.37967 4.43879 4.59626 4.84447 4.92500 4.96930 5.04961 5.20992 5.24431 5.26607 5.27705 5.35322 5.44178 5.45186 5.50402 5.60641 5.68645 5.91847 5.96688 6.11674 6.16229 6.19075 6.22422 6.25908 6.39568 6.57029 6.71644 6.74905 6.91592 7.10722 7.13020 7.26353 7.32132 7.68967 7.72212 8.04854 8.45101 8.92677 9.50444 11.01750 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.002722 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.832374 B =10284.384134 C =11125.027925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.006 4.006 5 C -0.518 4.518 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.902 5.902 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.118 3.882 14 N -0.728 5.728 15 C 0.253 3.747 16 C -0.214 4.214 17 C -0.008 4.008 18 C -0.216 4.216 19 C 0.567 3.433 20 O -0.549 6.549 21 N -0.622 5.622 22 C 0.087 3.913 23 C 0.056 3.944 24 C -0.060 4.060 25 C -0.213 4.213 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.017 0.983 30 H 0.014 0.986 31 H 0.263 0.737 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.402 0.598 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.148 0.852 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 -5.978 22.404 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.044 4.044 5 C -0.556 4.556 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.541 5.541 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 C -0.005 4.005 14 N -0.353 5.353 15 C 0.144 3.856 16 C -0.237 4.237 17 C -0.028 4.028 18 C -0.221 4.221 19 C 0.358 3.642 20 O -0.428 6.428 21 N -0.355 5.355 22 C -0.056 4.056 23 C -0.086 4.086 24 C -0.079 4.079 25 C -0.236 4.236 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.237 0.763 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.165 0.835 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.675 -5.930 22.520 23.970 hybrid contribution 0.381 -0.606 -0.446 0.843 sum 6.056 -6.537 22.074 23.805 Atomic orbital electron populations 1.21747 0.95380 1.01272 1.00839 1.21256 0.96066 0.99956 0.93376 0.91252 1.19566 0.96067 0.95880 0.92852 1.21065 1.35776 1.09716 0.89020 0.90822 1.25032 0.95570 0.96996 0.95925 1.69907 1.46837 1.39263 0.98081 0.86796 0.80630 0.84191 0.77758 1.20307 1.21401 1.19030 1.21758 0.99316 0.95386 0.84046 1.45039 1.59579 1.27799 1.02870 1.18164 0.90071 0.91775 0.85593 1.20538 1.09120 1.02936 0.91125 1.20835 0.91767 0.93250 0.96899 1.19376 1.10127 1.00559 0.92062 1.18367 0.79413 0.77360 0.89014 1.90746 1.52231 1.58785 1.41013 1.47587 1.30575 1.49458 1.07912 1.21628 0.99758 1.00260 0.83935 1.22674 0.96116 1.00677 0.89165 1.21978 0.95217 0.99381 0.91331 1.20659 1.06610 0.98308 0.98050 0.94827 0.91122 0.93445 0.96443 0.96770 0.92689 0.92148 0.92185 0.76263 0.85703 0.85426 0.92846 0.91310 0.90587 0.88197 0.91362 0.91996 0.83471 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.88 37.16 0.33 -1.92 16 2 C -0.09 -1.52 2.37 -90.62 -0.22 -1.73 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.01 -0.13 3.52 -27.88 -0.10 -0.22 16 5 C -0.52 -13.83 8.96 -34.44 -0.31 -14.14 16 6 H 0.07 2.12 7.30 -52.49 -0.38 1.73 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 9 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 13 C 0.12 1.67 4.29 -4.05 -0.02 1.66 16 14 N -0.73 -9.08 5.44 -58.64 -0.32 -9.40 16 15 C 0.25 3.10 6.65 -83.86 -0.56 2.55 16 16 C -0.21 -2.49 9.87 -39.45 -0.39 -2.88 16 17 C -0.01 -0.09 9.58 -39.23 -0.38 -0.47 16 18 C -0.22 -2.63 5.62 -104.95 -0.59 -3.22 16 19 C 0.57 7.34 7.51 -12.48 -0.09 7.24 16 20 O -0.55 -8.87 16.19 5.28 0.09 -8.78 16 21 N -0.62 -6.04 3.27 -190.76 -0.62 -6.66 16 22 C 0.09 0.67 10.46 59.85 0.63 1.30 16 23 C 0.06 0.36 8.75 59.85 0.52 0.89 16 24 C -0.06 -0.63 7.54 -39.23 -0.30 -0.93 16 25 C -0.21 -2.46 9.28 -39.45 -0.37 -2.82 16 26 H 0.03 0.47 7.18 -51.93 -0.37 0.09 16 27 H 0.07 1.35 6.95 -51.93 -0.36 0.98 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 30 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.06 0.85 7.93 -51.93 -0.41 0.43 16 33 H 0.06 0.84 7.93 -51.93 -0.41 0.43 16 34 H 0.40 4.64 7.66 -40.82 -0.31 4.32 16 35 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.13 1.49 7.84 -52.48 -0.41 1.08 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 39 H 0.08 0.69 7.45 -51.93 -0.39 0.30 16 40 H 0.10 0.69 4.65 -51.93 -0.24 0.45 16 41 H 0.07 0.31 7.93 -51.93 -0.41 -0.10 16 42 H 0.06 0.33 7.35 -51.93 -0.38 -0.05 16 43 H 0.15 1.15 4.03 -52.49 -0.21 0.94 16 44 H 0.13 1.38 6.70 -52.49 -0.35 1.03 16 LS Contribution 350.19 15.07 5.28 5.28 Total: -1.00 -32.07 350.19 -8.09 -40.16 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.68 Total: 2.40 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.93 Total: -12.95 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.17 Total: -42.26 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.07 -8.09 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.661 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds